Wall clock time and date at job start Fri Apr 10 2020 18:32:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47089 * 2 1 4 4 C 1.50693 * 109.47373 * 239.99758 * 2 1 3 5 5 O 1.21288 * 120.00441 * 267.75110 * 4 2 1 6 6 N 1.34781 * 119.99934 * 87.74416 * 4 2 1 7 7 C 1.47422 * 125.64848 * 359.97438 * 6 4 2 8 8 C 1.54909 * 104.83190 * 155.90061 * 7 6 4 9 9 C 1.55163 * 101.57941 * 37.01495 * 8 7 6 10 10 O 1.42903 * 110.72280 * 82.85589 * 9 8 7 11 11 C 1.50696 * 110.71858 * 205.95474 * 9 8 7 12 12 H 1.08003 * 120.00232 * 116.15475 * 11 9 8 13 13 C 1.37879 * 119.99855 * 296.15378 * 11 9 8 14 14 N 1.31510 * 120.00055 * 0.02562 * 13 11 9 15 15 Si 1.86805 * 119.99890 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.47132 * 0.02562 * 15 13 11 17 17 H 1.48493 * 109.47174 * 120.00037 * 15 13 11 18 18 H 1.48500 * 109.47118 * 240.00187 * 15 13 11 19 19 C 1.47024 * 125.64704 * 180.02562 * 6 4 2 20 20 N 1.46910 * 109.46828 * 119.99822 * 2 1 3 21 21 C 1.46903 * 110.99249 * 174.19663 * 20 2 1 22 22 C 1.46893 * 110.99834 * 298.14938 * 20 2 1 23 23 C 1.53000 * 109.46622 * 163.87648 * 22 20 2 24 24 F 1.39906 * 109.47117 * 65.39508 * 23 22 20 25 25 F 1.39907 * 109.47362 * 185.39230 * 23 22 20 26 26 F 1.39899 * 109.47481 * 305.39162 * 23 22 20 27 27 H 1.08999 * 109.47089 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47210 * 300.00215 * 1 2 3 29 29 H 1.08995 * 109.47389 * 60.00099 * 1 2 3 30 30 H 1.09001 * 110.36233 * 37.06856 * 7 6 4 31 31 H 1.08999 * 110.36817 * 274.74701 * 7 6 4 32 32 H 1.08998 * 111.00815 * 278.93867 * 8 7 6 33 33 H 1.09004 * 111.03493 * 155.09381 * 8 7 6 34 34 H 0.96702 * 113.99349 * 61.45444 * 10 9 8 35 35 H 0.97005 * 119.99905 * 179.97438 * 14 13 11 36 36 H 1.08997 * 109.88362 * 61.60979 * 19 6 4 37 37 H 1.09003 * 109.88010 * 300.43716 * 19 6 4 38 38 H 1.09002 * 109.47292 * 65.21221 * 21 20 2 39 39 H 1.09003 * 109.46739 * 185.19966 * 21 20 2 40 40 H 1.08997 * 109.47703 * 305.19834 * 21 20 2 41 41 H 1.09000 * 109.47638 * 283.87517 * 22 20 2 42 42 H 1.08997 * 109.47587 * 43.88134 * 22 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.2734 -1.8984 -1.1889 6 7 2.2137 -0.0257 -2.3770 7 6 1.9607 1.4141 -2.5672 8 6 2.8632 1.8214 -3.7586 9 6 2.7684 0.5654 -4.6647 10 8 1.5859 0.6081 -5.4660 11 6 3.9940 0.4403 -5.5325 12 1 4.6544 -0.4063 -5.4156 13 6 4.2724 1.4067 -6.4757 14 7 3.4686 2.4378 -6.6177 15 14 5.7913 1.2513 -7.5520 16 1 6.5244 0.0095 -7.1973 17 1 5.3834 1.1943 -8.9786 18 1 6.6734 2.4262 -7.3358 19 6 2.6956 -0.5913 -3.6457 20 7 2.0196 -0.6925 1.1996 21 6 3.4815 -0.8333 1.1661 22 6 1.5851 -0.0013 2.4207 23 6 1.7533 -0.9339 3.6218 24 9 3.1127 -1.1989 3.8197 25 9 1.2263 -0.3224 4.7645 26 9 1.0747 -2.1331 3.3798 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 2.2404 1.9698 -1.6722 31 1 0.9120 1.5863 -2.8093 32 1 3.8891 1.9908 -3.4316 33 1 2.4670 2.7005 -4.2669 34 1 1.5471 1.3625 -6.0698 35 1 3.6646 3.1179 -7.2811 36 1 2.0014 -1.3537 -3.9991 37 1 3.6859 -1.0248 -3.5058 38 1 3.9428 0.1531 1.2141 39 1 3.8087 -1.4291 2.0183 40 1 3.7778 -1.3285 0.2414 41 1 2.1909 0.8929 2.5673 42 1 0.5369 0.2818 2.3245 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592850475.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:17 Heat of formation + Delta-G solvation = -240.727062 kcal Electronic energy + Delta-G solvation = -29138.350081 eV Core-core repulsion = 24510.108376 eV Total energy + Delta-G solvation = -4628.241705 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.145 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -51.04510 -48.61595 -48.47476 -41.44349 -39.47939 -38.00341 -36.12075 -34.18384 -32.93800 -31.20212 -30.59416 -30.03804 -27.26446 -26.16332 -25.22222 -23.87006 -22.72075 -21.45672 -20.15498 -19.52324 -19.34615 -19.23525 -18.72153 -17.85949 -17.04617 -16.97817 -16.88117 -16.17593 -16.08909 -15.92641 -15.50717 -15.36924 -15.17289 -14.95409 -14.79722 -14.69754 -14.66226 -14.48572 -14.32176 -13.90324 -13.56913 -13.40654 -13.30037 -13.20960 -13.07067 -12.95404 -12.67409 -12.58949 -12.56370 -12.36185 -12.26663 -12.24409 -11.98184 -11.28817 -10.80638 -10.60693 -10.14093 -9.63377 -9.60776 -8.26005 -6.39212 1.39303 1.44466 1.48181 1.53724 1.69971 1.95483 2.38611 2.54057 2.88839 2.99797 3.08940 3.35164 3.48175 3.84009 3.90686 4.00571 4.01384 4.03644 4.17445 4.25270 4.37666 4.43309 4.45619 4.58798 4.66294 4.71037 4.81207 4.90558 4.99248 5.16468 5.20856 5.23121 5.45523 5.52851 5.59409 5.66812 5.76381 6.07955 6.57455 6.65205 7.14296 7.31387 7.42839 8.80343 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.028053 B = 0.002838 C = 0.002759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.883799 B = 9863.908361 C =10146.228515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.081 3.919 3 H 0.096 0.904 4 C 0.522 3.478 5 O -0.574 6.574 6 N -0.609 5.609 7 C 0.103 3.897 8 C -0.127 4.127 9 C 0.236 3.764 10 O -0.593 6.593 11 C -0.563 4.563 12 H 0.048 0.952 13 C 0.040 3.960 14 N -0.904 5.904 15 Si 0.956 3.044 16 H -0.278 1.278 17 H -0.279 1.279 18 H -0.274 1.274 19 C 0.131 3.869 20 N -0.535 5.535 21 C 0.003 3.997 22 C 0.007 3.993 23 C 0.457 3.543 24 F -0.190 7.190 25 F -0.181 7.181 26 F -0.186 7.186 27 H 0.056 0.944 28 H 0.105 0.895 29 H 0.077 0.923 30 H 0.101 0.899 31 H 0.078 0.922 32 H 0.057 0.943 33 H 0.080 0.920 34 H 0.381 0.619 35 H 0.272 0.728 36 H 0.041 0.959 37 H 0.056 0.944 38 H 0.050 0.950 39 H 0.087 0.913 40 H 0.055 0.945 41 H 0.112 0.888 42 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.252 3.768 18.433 19.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.029 4.029 3 H 0.113 0.887 4 C 0.311 3.689 5 O -0.453 6.453 6 N -0.343 5.343 7 C -0.018 4.018 8 C -0.166 4.166 9 C 0.196 3.804 10 O -0.402 6.402 11 C -0.601 4.601 12 H 0.067 0.933 13 C -0.162 4.162 14 N -0.543 5.543 15 Si 0.782 3.218 16 H -0.203 1.203 17 H -0.205 1.205 18 H -0.199 1.199 19 C 0.008 3.992 20 N -0.261 5.261 21 C -0.145 4.145 22 C -0.122 4.122 23 C 0.403 3.597 24 F -0.172 7.172 25 F -0.163 7.163 26 F -0.167 7.167 27 H 0.075 0.925 28 H 0.123 0.877 29 H 0.095 0.905 30 H 0.120 0.880 31 H 0.096 0.904 32 H 0.076 0.924 33 H 0.098 0.902 34 H 0.231 0.769 35 H 0.082 0.918 36 H 0.059 0.941 37 H 0.074 0.926 38 H 0.068 0.932 39 H 0.106 0.894 40 H 0.074 0.926 41 H 0.129 0.871 42 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -5.499 2.226 18.778 19.693 hybrid contribution 1.554 0.625 -1.210 2.067 sum -3.944 2.851 17.568 18.230 Atomic orbital electron populations 1.21879 0.89705 1.03526 1.04749 1.21615 0.98870 0.96385 0.86066 0.88652 1.20695 0.77367 0.86848 0.83970 1.90672 1.52908 1.17009 1.84741 1.48725 1.64256 1.11444 1.09831 1.22589 1.00313 0.79243 0.99698 1.23095 0.98498 0.99752 0.95253 1.19574 0.83446 0.90155 0.87222 1.86113 1.43466 1.53365 1.57282 1.21758 1.09165 1.08465 1.20731 0.93339 1.25532 0.99151 0.94248 0.97266 1.69687 1.38235 1.11225 1.35152 0.85536 0.79635 0.77998 0.78586 1.20286 1.20489 1.19938 1.21746 0.97508 0.96681 0.83309 1.61436 1.13158 1.50976 1.00488 1.22837 0.85871 1.01715 1.04055 1.23477 1.08139 0.94318 0.86249 1.20692 0.73209 0.80836 0.84996 1.93105 1.33803 1.94683 1.95579 1.93191 1.86505 1.82804 1.53793 1.93194 1.80053 1.49156 1.94333 0.92528 0.87653 0.90451 0.88046 0.90421 0.92399 0.90166 0.76852 0.91832 0.94100 0.92610 0.93173 0.89430 0.92632 0.87064 0.83346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 9.05 71.98 0.65 -1.87 16 2 C 0.08 1.83 2.02 44.16 0.09 1.92 16 3 H 0.10 1.64 6.60 -2.39 -0.02 1.62 16 4 C 0.52 17.87 5.93 87.65 0.52 18.39 16 5 O -0.57 -24.60 15.46 -3.06 -0.05 -24.65 16 6 N -0.61 -22.03 3.33 -811.79 -2.70 -24.73 16 7 C 0.10 3.14 6.67 86.86 0.58 3.71 16 8 C -0.13 -5.02 5.57 31.99 0.18 -4.85 16 9 C 0.24 11.05 0.85 -10.35 -0.01 11.04 16 10 O -0.59 -29.04 13.06 -148.98 -1.95 -30.99 16 11 C -0.56 -29.22 8.22 25.60 0.21 -29.01 16 12 H 0.05 2.60 7.56 -2.91 -0.02 2.57 16 13 C 0.04 1.98 5.29 84.66 0.45 2.43 16 14 N -0.90 -44.51 10.69 21.45 0.23 -44.28 16 15 Si 0.96 40.61 29.54 68.60 2.03 42.63 16 16 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 17 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 18 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 19 C 0.13 5.83 6.22 86.73 0.54 6.37 16 20 N -0.54 -12.08 4.18 -901.47 -3.77 -15.85 16 21 C 0.00 0.07 8.78 127.69 1.12 1.19 16 22 C 0.01 0.10 4.96 86.30 0.43 0.53 16 23 C 0.46 8.35 3.25 71.98 0.23 8.58 16 24 F -0.19 -3.92 14.48 44.97 0.65 -3.27 16 25 F -0.18 -3.05 17.32 44.97 0.78 -2.27 16 26 F -0.19 -4.35 17.14 44.97 0.77 -3.57 16 27 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.11 1.06 6.14 -2.39 -0.01 1.04 16 29 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.10 2.25 6.78 -2.39 -0.02 2.23 16 31 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 32 H 0.06 2.36 8.04 -2.39 -0.02 2.35 16 33 H 0.08 3.28 7.64 -2.38 -0.02 3.27 16 34 H 0.38 18.65 7.28 -74.06 -0.54 18.11 16 35 H 0.27 12.72 8.31 -92.70 -0.77 11.95 16 36 H 0.04 1.95 8.07 -2.39 -0.02 1.93 16 37 H 0.06 2.62 7.66 -2.39 -0.02 2.60 16 38 H 0.05 1.00 8.09 -2.39 -0.02 0.98 16 39 H 0.09 2.08 5.58 -2.39 -0.01 2.07 16 40 H 0.05 1.77 5.80 -2.39 -0.01 1.76 16 41 H 0.11 1.02 8.01 -2.39 -0.02 1.00 16 42 H 0.15 1.34 5.71 -2.39 -0.01 1.33 16 Total: -1.00 -63.31 344.99 1.52 -61.80 By element: Atomic # 1 Polarization: 26.23 SS G_CDS: 0.53 Total: 26.76 kcal Atomic # 6 Polarization: 13.44 SS G_CDS: 4.99 Total: 18.43 kcal Atomic # 7 Polarization: -78.62 SS G_CDS: -6.24 Total: -84.86 kcal Atomic # 8 Polarization: -53.64 SS G_CDS: -1.99 Total: -55.64 kcal Atomic # 9 Polarization: -11.32 SS G_CDS: 2.20 Total: -9.12 kcal Atomic # 14 Polarization: 40.61 SS G_CDS: 2.03 Total: 42.63 kcal Total: -63.31 1.52 -61.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592850475.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -178.931 kcal (2) G-P(sol) polarization free energy of solvation -63.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -242.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -240.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds