Wall clock time and date at job start Fri Apr 10 2020 18:32:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.46965 * 2 1 4 4 C 1.50704 * 109.47223 * 239.99659 * 2 1 3 5 5 O 1.21285 * 119.99958 * 262.77819 * 4 2 1 6 6 N 1.34775 * 120.00126 * 82.77688 * 4 2 1 7 7 C 1.47022 * 125.64616 * 355.02933 * 6 4 2 8 8 C 1.54322 * 107.39958 * 178.89614 * 7 6 4 9 9 C 1.55397 * 102.82966 * 337.97608 * 8 7 6 10 10 O 1.42893 * 110.89275 * 277.26539 * 9 8 7 11 11 C 1.50707 * 111.07252 * 153.48604 * 9 8 7 12 12 H 1.07997 * 119.99615 * 247.66766 * 11 9 8 13 13 C 1.37879 * 119.99888 * 67.66062 * 11 9 8 14 14 N 1.31516 * 119.99813 * 0.02562 * 13 11 9 15 15 Si 1.86796 * 120.00007 * 180.02562 * 13 11 9 16 16 H 1.48496 * 109.47198 * 0.02562 * 15 13 11 17 17 H 1.48498 * 109.47245 * 120.00224 * 15 13 11 18 18 H 1.48497 * 109.47162 * 240.00125 * 15 13 11 19 19 C 1.47423 * 125.64738 * 175.06857 * 6 4 2 20 20 N 1.46896 * 109.46873 * 119.99647 * 2 1 3 21 21 C 1.46898 * 111.00064 * 46.48918 * 20 2 1 22 22 C 1.46904 * 111.00105 * 282.53494 * 20 2 1 23 23 C 1.53006 * 109.46789 * 283.53707 * 22 20 2 24 24 F 1.39898 * 109.46741 * 65.64982 * 23 22 20 25 25 F 1.39895 * 109.46758 * 185.64550 * 23 22 20 26 26 F 1.39892 * 109.47314 * 305.64828 * 23 22 20 27 27 H 1.09000 * 109.46722 * 51.90585 * 1 2 3 28 28 H 1.09001 * 109.47334 * 171.89517 * 1 2 3 29 29 H 1.08993 * 109.47643 * 291.90349 * 1 2 3 30 30 H 1.08999 * 109.88362 * 298.39313 * 7 6 4 31 31 H 1.09004 * 109.88707 * 59.40367 * 7 6 4 32 32 H 1.09007 * 110.71938 * 96.24678 * 8 7 6 33 33 H 1.09005 * 110.72035 * 219.51721 * 8 7 6 34 34 H 0.96702 * 114.00275 * 292.23113 * 10 9 8 35 35 H 0.96999 * 119.99440 * 179.97438 * 14 13 11 36 36 H 1.08998 * 110.36756 * 322.92861 * 19 6 4 37 37 H 1.08999 * 110.36746 * 85.14603 * 19 6 4 38 38 H 1.09004 * 109.47643 * 65.91601 * 21 20 2 39 39 H 1.09005 * 109.47424 * 185.91711 * 21 20 2 40 40 H 1.09002 * 109.47188 * 305.90995 * 21 20 2 41 41 H 1.08997 * 109.46844 * 43.53880 * 22 20 2 42 42 H 1.09001 * 109.47152 * 163.53902 * 22 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.3590 -1.8768 -1.1664 6 7 2.1187 -0.0499 -2.4020 7 6 1.6626 1.3264 -2.6453 8 6 1.9885 1.6678 -4.1145 9 6 3.1200 0.6602 -4.4600 10 8 4.3877 1.1442 -4.0122 11 6 3.1494 0.3640 -5.9374 12 1 2.8857 -0.6199 -6.2962 13 6 3.5127 1.3492 -6.8309 14 7 3.8341 2.5473 -6.3938 15 14 3.5484 0.9824 -8.6621 16 1 3.1467 -0.4285 -8.8923 17 1 2.6042 1.8866 -9.3666 18 1 4.9221 1.1978 -9.1834 19 6 2.6853 -0.5881 -3.6521 20 7 2.0196 -0.6924 1.1995 21 6 1.3049 -1.9593 1.4046 22 6 1.9145 0.1693 2.3846 23 6 3.0389 1.2067 2.3622 24 9 2.8561 2.0691 1.2759 25 9 3.0174 1.9433 3.5513 26 9 4.2712 0.5561 2.2389 27 1 -0.3633 0.6340 -0.8088 28 1 -0.3634 -1.0174 -0.1449 29 1 -0.3634 0.3833 0.9534 30 1 0.5877 1.3957 -2.4782 31 1 2.1859 2.0135 -1.9802 32 1 1.1188 1.5034 -4.7507 33 1 2.3433 2.6947 -4.2023 34 1 4.7013 1.9250 -4.4888 35 1 4.0901 3.2403 -7.0224 36 1 3.5472 -1.2197 -3.4369 37 1 1.9298 -1.1520 -4.1992 38 1 1.5415 -2.6459 0.5917 39 1 1.6115 -2.4000 2.3533 40 1 0.2312 -1.7721 1.4213 41 1 0.9505 0.6780 2.3794 42 1 1.9994 -0.4392 3.2849 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592850476.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:19 Heat of formation + Delta-G solvation = -219.826584 kcal Electronic energy + Delta-G solvation = -29749.483549 eV Core-core repulsion = 25122.148157 eV Total energy + Delta-G solvation = -4627.335392 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.145 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -50.13700 -47.73199 -47.51820 -40.02235 -38.08641 -36.66337 -34.33442 -32.14971 -31.68727 -29.88908 -29.16140 -28.23544 -26.19465 -25.21140 -23.92521 -22.55144 -21.35723 -19.68853 -18.85044 -18.58087 -18.49426 -17.35705 -17.25885 -16.90894 -16.11784 -15.20669 -15.02206 -14.96121 -14.55875 -14.50266 -14.40521 -14.17065 -14.08484 -13.90124 -13.73752 -13.69743 -13.59986 -13.12737 -12.85901 -12.63204 -12.44069 -12.00487 -11.94882 -11.90683 -11.73613 -11.56582 -11.33530 -11.29653 -11.21978 -10.89813 -10.58912 -10.47299 -10.05547 -9.45151 -9.34162 -8.70979 -8.56493 -8.21163 -7.97852 -6.31513 -4.39263 2.58944 2.93422 3.17487 3.22784 3.27016 3.31423 3.64214 3.82599 3.89265 4.24969 4.32340 4.67683 4.72373 4.83673 4.93669 4.96415 5.06935 5.22042 5.34105 5.40516 5.51524 5.55019 5.74712 5.84280 5.87185 6.02851 6.05626 6.24494 6.42634 6.57742 6.62893 6.66086 6.86771 6.96657 7.27812 7.31391 7.72223 7.97749 8.13155 8.61800 8.66348 9.30106 9.48189 10.76257 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.021446 B = 0.003500 C = 0.003268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.308175 B = 7998.731170 C = 8566.762921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.043 3.957 3 H 0.119 0.881 4 C 0.538 3.462 5 O -0.541 6.541 6 N -0.604 5.604 7 C 0.098 3.902 8 C -0.139 4.139 9 C 0.249 3.751 10 O -0.583 6.583 11 C -0.535 4.535 12 H 0.066 0.934 13 C 0.072 3.928 14 N -0.897 5.897 15 Si 0.904 3.096 16 H -0.271 1.271 17 H -0.282 1.282 18 H -0.281 1.281 19 C 0.122 3.878 20 N -0.514 5.514 21 C 0.017 3.983 22 C 0.006 3.994 23 C 0.455 3.545 24 F -0.180 7.180 25 F -0.187 7.187 26 F -0.169 7.169 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.064 0.936 30 H 0.052 0.948 31 H 0.058 0.942 32 H 0.068 0.932 33 H 0.083 0.917 34 H 0.386 0.614 35 H 0.269 0.731 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.103 0.897 39 H 0.067 0.933 40 H 0.035 0.965 41 H 0.084 0.916 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.159 -0.584 16.372 18.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.069 4.069 3 H 0.136 0.864 4 C 0.325 3.675 5 O -0.419 6.419 6 N -0.337 5.337 7 C -0.025 4.025 8 C -0.178 4.178 9 C 0.208 3.792 10 O -0.394 6.394 11 C -0.573 4.573 12 H 0.084 0.916 13 C -0.130 4.130 14 N -0.537 5.537 15 Si 0.731 3.269 16 H -0.196 1.196 17 H -0.208 1.208 18 H -0.207 1.207 19 C 0.001 3.999 20 N -0.238 5.238 21 C -0.130 4.130 22 C -0.124 4.124 23 C 0.400 3.600 24 F -0.162 7.162 25 F -0.169 7.169 26 F -0.150 7.150 27 H 0.093 0.907 28 H 0.089 0.911 29 H 0.083 0.917 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.102 0.898 34 H 0.238 0.762 35 H 0.079 0.921 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.122 0.878 39 H 0.086 0.914 40 H 0.053 0.947 41 H 0.102 0.898 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -7.462 -1.674 16.743 18.407 hybrid contribution -0.611 0.991 -1.239 1.701 sum -8.073 -0.683 15.504 17.493 Atomic orbital electron populations 1.22316 0.94736 1.03614 1.02979 1.22100 0.94898 1.00202 0.89656 0.86384 1.19613 0.78482 0.86540 0.82829 1.90590 1.50424 1.16306 1.84592 1.48530 1.59690 1.15327 1.10160 1.22202 0.97345 0.82705 1.00250 1.23243 1.01125 1.02609 0.90783 1.19632 0.81193 0.87276 0.91079 1.86111 1.37292 1.51419 1.64545 1.21529 1.46855 0.98378 0.90567 0.91570 1.24992 0.93695 0.94600 0.99714 1.69574 1.45921 1.02815 1.35425 0.86347 0.77856 0.78626 0.84064 1.19558 1.20823 1.20731 1.22374 0.97299 0.97618 0.82648 1.61675 1.57507 1.04459 1.00121 1.22722 0.95659 0.90491 1.04102 1.23300 0.95579 0.95744 0.97804 1.20559 0.84640 0.81725 0.73086 1.93099 1.95140 1.72533 1.55388 1.93173 1.96749 1.79202 1.47728 1.93227 1.45562 1.80778 1.95479 0.90667 0.91149 0.91726 0.92931 0.92337 0.91359 0.89835 0.76240 0.92107 0.91105 0.91168 0.87831 0.91430 0.94671 0.89768 0.86089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.90 8.00 37.16 0.30 -1.60 16 2 C 0.04 0.60 1.99 -68.86 -0.14 0.46 16 3 H 0.12 1.69 4.39 -51.93 -0.23 1.46 16 4 C 0.54 10.02 7.01 -10.98 -0.08 9.95 16 5 O -0.54 -11.47 14.59 5.55 0.08 -11.39 16 6 N -0.60 -11.88 3.33 -170.52 -0.57 -12.44 16 7 C 0.10 1.74 6.28 -3.07 -0.02 1.72 16 8 C -0.14 -2.92 5.66 -24.77 -0.14 -3.06 16 9 C 0.25 5.97 0.89 -89.49 -0.08 5.89 16 10 O -0.58 -15.10 13.18 -35.23 -0.46 -15.56 16 11 C -0.53 -13.78 8.26 -34.44 -0.28 -14.06 16 12 H 0.07 1.70 7.77 -52.49 -0.41 1.29 16 13 C 0.07 1.83 5.30 -17.82 -0.09 1.74 16 14 N -0.90 -22.93 10.79 55.43 0.60 -22.33 16 15 Si 0.90 19.97 29.54 -169.99 -5.02 14.95 16 16 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 17 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 18 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 19 C 0.12 2.72 6.06 -2.53 -0.02 2.71 16 20 N -0.51 -6.59 4.26 -236.28 -1.01 -7.59 16 21 C 0.02 0.19 8.72 60.06 0.52 0.71 16 22 C 0.01 0.06 5.02 -3.82 -0.02 0.04 16 23 C 0.45 5.37 3.27 37.16 0.12 5.49 16 24 F -0.18 -2.42 14.56 2.25 0.03 -2.39 16 25 F -0.19 -2.04 17.32 2.25 0.04 -2.00 16 26 F -0.17 -2.43 17.14 2.25 0.04 -2.39 16 27 H 0.07 0.79 6.85 -51.93 -0.36 0.43 16 28 H 0.07 0.77 6.73 -51.93 -0.35 0.42 16 29 H 0.06 0.53 6.71 -51.93 -0.35 0.18 16 30 H 0.05 0.78 6.91 -51.93 -0.36 0.42 16 31 H 0.06 1.01 7.72 -51.93 -0.40 0.61 16 32 H 0.07 1.42 8.04 -51.93 -0.42 1.00 16 33 H 0.08 1.84 7.86 -51.93 -0.41 1.44 16 34 H 0.39 10.05 6.93 45.56 0.32 10.37 16 35 H 0.27 6.56 8.31 -40.82 -0.34 6.22 16 36 H 0.07 1.70 8.09 -51.93 -0.42 1.28 16 37 H 0.07 1.50 8.02 -51.93 -0.42 1.09 16 38 H 0.10 1.47 5.97 -51.93 -0.31 1.16 16 39 H 0.07 0.60 7.83 -51.93 -0.41 0.19 16 40 H 0.03 0.32 5.99 -51.93 -0.31 0.01 16 41 H 0.08 0.61 6.57 -51.93 -0.34 0.27 16 42 H 0.12 0.84 7.72 -51.93 -0.40 0.44 16 LS Contribution 340.87 15.07 5.14 5.14 Total: -1.00 -29.20 340.87 -5.76 -34.96 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: -4.70 Total: 11.06 kcal Atomic # 6 Polarization: 9.91 SS G_CDS: 0.08 Total: 9.98 kcal Atomic # 7 Polarization: -41.39 SS G_CDS: -0.98 Total: -42.36 kcal Atomic # 8 Polarization: -26.57 SS G_CDS: -0.38 Total: -26.95 kcal Atomic # 9 Polarization: -6.88 SS G_CDS: 0.11 Total: -6.77 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.95 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -29.20 -5.76 -34.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592850476.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -184.869 kcal (2) G-P(sol) polarization free energy of solvation -29.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -214.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -219.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds