Wall clock time and date at job start Fri Apr 10 2020 18:32:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47183 * 2 1 4 4 C 1.50708 * 109.46967 * 119.99349 * 2 1 3 5 5 O 1.21282 * 119.99838 * 90.17228 * 4 2 1 6 6 N 1.34773 * 120.00070 * 270.17895 * 4 2 1 7 7 C 1.47426 * 125.64629 * 354.94907 * 6 4 2 8 8 C 1.54917 * 104.83000 * 155.91437 * 7 6 4 9 9 C 1.55147 * 101.58479 * 37.00559 * 8 7 6 10 10 O 1.42900 * 110.72149 * 82.86139 * 9 8 7 11 11 C 1.50697 * 110.72418 * 205.95805 * 9 8 7 12 12 H 1.08007 * 119.99810 * 116.15605 * 11 9 8 13 13 C 1.37875 * 120.00253 * 296.16286 * 11 9 8 14 14 N 1.31515 * 119.99840 * 359.97438 * 13 11 9 15 15 Si 1.86799 * 120.00183 * 179.97438 * 13 11 9 16 16 H 1.48503 * 109.47022 * 89.99930 * 15 13 11 17 17 H 1.48497 * 109.46812 * 209.99804 * 15 13 11 18 18 H 1.48498 * 109.46968 * 330.00060 * 15 13 11 19 19 C 1.47020 * 125.64786 * 174.99523 * 6 4 2 20 20 N 1.46895 * 109.47263 * 239.99415 * 2 1 3 21 21 C 1.46907 * 110.99879 * 181.12773 * 20 2 1 22 22 C 1.46894 * 111.00001 * 57.17359 * 20 2 1 23 23 C 1.53001 * 109.47120 * 195.73551 * 22 20 2 24 24 F 1.39899 * 109.47197 * 53.53296 * 23 22 20 25 25 F 1.39895 * 109.47286 * 173.53534 * 23 22 20 26 26 F 1.39903 * 109.47233 * 293.53544 * 23 22 20 27 27 H 1.08997 * 109.46723 * 51.79706 * 1 2 3 28 28 H 1.09002 * 109.47021 * 171.79136 * 1 2 3 29 29 H 1.08999 * 109.47626 * 291.79561 * 1 2 3 30 30 H 1.08990 * 110.37156 * 37.07518 * 7 6 4 31 31 H 1.08997 * 110.36709 * 274.74361 * 7 6 4 32 32 H 1.09002 * 110.99713 * 278.93237 * 8 7 6 33 33 H 1.08993 * 111.03695 * 155.10172 * 8 7 6 34 34 H 0.96707 * 113.99752 * 61.45427 * 10 9 8 35 35 H 0.96998 * 120.00220 * 180.02562 * 14 13 11 36 36 H 1.08999 * 109.88627 * 61.60685 * 19 6 4 37 37 H 1.08997 * 109.88144 * 300.43714 * 19 6 4 38 38 H 1.08994 * 109.47450 * 53.74830 * 21 20 2 39 39 H 1.08994 * 109.47103 * 173.75206 * 21 20 2 40 40 H 1.09004 * 109.46864 * 293.74943 * 21 20 2 41 41 H 1.08999 * 109.47075 * 315.72887 * 22 20 2 42 42 H 1.09003 * 109.47149 * 75.73596 * 22 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 1.2306 5 8 2.2374 -1.9053 1.1998 6 7 2.2535 -0.0177 2.3654 7 6 2.1477 1.4453 2.5134 8 6 1.8761 1.6726 4.0216 9 6 2.7555 0.5690 4.6663 10 8 4.1112 1.0059 4.7818 11 6 2.2092 0.1708 6.0132 12 1 1.8478 -0.8342 6.1737 13 6 2.1707 1.0896 7.0405 14 7 2.6112 2.3132 6.8452 15 14 1.4929 0.5962 8.7098 16 1 2.5941 0.0687 9.5550 17 1 0.8879 1.7818 9.3683 18 1 0.4580 -0.4539 8.5331 19 6 2.6411 -0.5958 3.6604 20 7 2.0197 -0.6926 -1.1993 21 6 3.4880 -0.7356 -1.2198 22 6 1.4943 -0.0668 -2.4200 23 6 1.6883 -1.0162 -3.6040 24 9 1.1290 -2.2618 -3.2995 25 9 1.0584 -0.4861 -4.7350 26 9 3.0552 -1.1690 -3.8601 27 1 -0.3633 0.6356 -0.8076 28 1 -0.3633 -1.0172 -0.1467 29 1 -0.3634 0.3816 0.9542 30 1 1.3197 1.8281 1.9170 31 1 3.0814 1.9248 2.2198 32 1 0.8227 1.5195 4.2562 33 1 2.2034 2.6646 4.3329 34 1 4.2269 1.7851 5.3426 35 1 2.5845 2.9595 7.5680 36 1 3.6023 -1.1014 3.5678 37 1 1.8798 -1.3007 3.9944 38 1 3.8519 -1.1663 -0.2871 39 1 3.8219 -1.3478 -2.0574 40 1 3.8795 0.2757 -1.3301 41 1 0.4322 0.1427 -2.2927 42 1 2.0282 0.8644 -2.6097 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592850477.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:21 Heat of formation + Delta-G solvation = -221.558097 kcal Electronic energy + Delta-G solvation = -29116.364850 eV Core-core repulsion = 24488.954374 eV Total energy + Delta-G solvation = -4627.410476 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.145 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -50.23829 -47.82609 -47.61985 -40.07887 -38.06455 -36.73048 -34.40904 -32.24734 -31.87245 -29.80836 -29.65720 -28.40709 -25.57055 -25.25790 -24.03728 -22.58848 -21.60789 -19.73691 -18.95234 -18.71245 -18.39818 -17.80834 -17.27069 -16.69061 -16.14211 -15.41441 -15.10894 -14.96141 -14.70999 -14.60255 -14.50536 -14.34863 -14.17414 -13.96389 -13.84556 -13.83402 -13.68489 -13.07076 -12.82895 -12.65418 -12.22154 -12.16428 -12.05404 -11.91602 -11.62396 -11.46865 -11.43684 -11.38533 -11.36540 -10.95358 -10.70187 -10.51625 -10.18487 -9.52749 -9.36492 -8.75828 -8.69585 -8.29396 -8.09261 -6.34875 -4.41892 2.44414 2.89520 3.09654 3.16942 3.24470 3.28254 3.59611 3.64170 3.83881 4.22448 4.22995 4.56534 4.75326 4.82008 4.90098 4.92527 4.94915 5.27508 5.32907 5.41912 5.45138 5.58227 5.67760 5.79965 5.89617 5.94657 6.01958 6.10505 6.38249 6.46373 6.53247 6.62132 6.81136 6.89480 7.20819 7.26296 7.67705 7.95570 8.00659 8.54441 8.61037 9.25220 9.35202 10.73072 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.033515 B = 0.002735 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.243277 B =10236.386635 C =10289.218530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.072 3.928 3 H 0.066 0.934 4 C 0.528 3.472 5 O -0.530 6.530 6 N -0.608 5.608 7 C 0.093 3.907 8 C -0.136 4.136 9 C 0.248 3.752 10 O -0.586 6.586 11 C -0.534 4.534 12 H 0.064 0.936 13 C 0.073 3.927 14 N -0.897 5.897 15 Si 0.903 3.097 16 H -0.278 1.278 17 H -0.285 1.285 18 H -0.272 1.272 19 C 0.124 3.876 20 N -0.514 5.514 21 C 0.003 3.997 22 C 0.003 3.997 23 C 0.459 3.541 24 F -0.169 7.169 25 F -0.186 7.186 26 F -0.183 7.183 27 H 0.065 0.935 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.087 0.913 34 H 0.384 0.616 35 H 0.269 0.731 36 H 0.061 0.939 37 H 0.072 0.928 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.032 0.968 41 H 0.124 0.876 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.467 1.776 -17.273 17.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.039 4.039 3 H 0.084 0.916 4 C 0.314 3.686 5 O -0.406 6.406 6 N -0.342 5.342 7 C -0.030 4.030 8 C -0.174 4.174 9 C 0.208 3.792 10 O -0.395 6.395 11 C -0.573 4.573 12 H 0.083 0.917 13 C -0.130 4.130 14 N -0.537 5.537 15 Si 0.731 3.269 16 H -0.204 1.204 17 H -0.210 1.210 18 H -0.197 1.197 19 C 0.002 3.998 20 N -0.238 5.238 21 C -0.145 4.145 22 C -0.127 4.127 23 C 0.404 3.596 24 F -0.151 7.151 25 F -0.168 7.168 26 F -0.165 7.165 27 H 0.084 0.916 28 H 0.097 0.903 29 H 0.093 0.907 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.105 0.895 34 H 0.235 0.765 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.090 0.910 38 H 0.104 0.896 39 H 0.104 0.896 40 H 0.050 0.950 41 H 0.142 0.858 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.404 0.241 -17.650 17.977 hybrid contribution -0.109 1.141 1.075 1.572 sum -3.513 1.383 -16.575 17.000 Atomic orbital electron populations 1.21868 0.91624 1.03950 1.02967 1.21613 0.97582 0.96056 0.88658 0.91610 1.19704 0.78565 0.87239 0.83113 1.90697 1.51719 1.14601 1.83606 1.48662 1.66965 1.08580 1.10006 1.22535 0.99954 0.80173 1.00290 1.23318 1.01497 1.02540 0.90090 1.19451 0.80280 0.87894 0.91608 1.86126 1.28121 1.52058 1.73210 1.21516 1.41825 0.98388 0.95543 0.91730 1.24977 0.94174 0.94599 0.99224 1.69636 1.46870 1.03758 1.33402 0.86405 0.79267 0.78179 0.83086 1.20368 1.21048 1.19690 1.22078 0.99618 0.97113 0.80955 1.61577 1.10587 1.52343 0.99329 1.22872 0.85304 1.00862 1.05435 1.23346 1.05705 0.94711 0.88943 1.20432 0.73696 0.81488 0.83952 1.93227 1.84893 1.44037 1.92897 1.93178 1.82480 1.86340 1.54758 1.93125 1.32547 1.96077 1.94736 0.91580 0.90329 0.90671 0.92207 0.91982 0.91350 0.89462 0.76545 0.92156 0.92031 0.90956 0.89629 0.89564 0.94966 0.85760 0.89953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 8.65 37.16 0.32 -1.24 16 2 C 0.07 0.92 1.88 -68.86 -0.13 0.79 16 3 H 0.07 0.74 7.00 -51.93 -0.36 0.38 16 4 C 0.53 9.28 5.82 -10.98 -0.06 9.21 16 5 O -0.53 -11.19 16.01 5.56 0.09 -11.10 16 6 N -0.61 -11.26 3.33 -170.52 -0.57 -11.83 16 7 C 0.09 1.54 6.34 -2.52 -0.02 1.53 16 8 C -0.14 -2.73 5.57 -24.58 -0.14 -2.87 16 9 C 0.25 5.73 0.85 -89.94 -0.08 5.65 16 10 O -0.59 -14.22 13.06 -35.23 -0.46 -14.68 16 11 C -0.53 -13.54 8.22 -34.44 -0.28 -13.83 16 12 H 0.06 1.65 7.56 -52.48 -0.40 1.25 16 13 C 0.07 1.81 5.29 -17.82 -0.09 1.72 16 14 N -0.90 -22.26 10.69 55.43 0.59 -21.67 16 15 Si 0.90 19.77 29.54 -169.99 -5.02 14.75 16 16 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 17 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 18 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 19 C 0.12 2.69 6.23 -3.06 -0.02 2.67 16 20 N -0.51 -6.42 4.13 -236.29 -0.98 -7.40 16 21 C 0.00 0.03 8.84 60.07 0.53 0.56 16 22 C 0.00 0.03 4.92 -3.83 -0.02 0.01 16 23 C 0.46 4.74 3.23 37.16 0.12 4.86 16 24 F -0.17 -2.11 17.12 2.25 0.04 -2.07 16 25 F -0.19 -1.81 17.32 2.25 0.04 -1.78 16 26 F -0.18 -2.03 14.55 2.25 0.03 -1.99 16 27 H 0.07 0.50 6.51 -51.93 -0.34 0.16 16 28 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 29 H 0.07 0.82 8.12 -51.93 -0.42 0.40 16 30 H 0.06 0.80 7.35 -51.93 -0.38 0.42 16 31 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.07 1.41 8.04 -51.93 -0.42 0.99 16 33 H 0.09 1.83 7.64 -51.93 -0.40 1.44 16 34 H 0.38 9.33 7.28 45.56 0.33 9.66 16 35 H 0.27 6.41 8.31 -40.82 -0.34 6.07 16 36 H 0.06 1.40 8.07 -51.93 -0.42 0.99 16 37 H 0.07 1.60 7.66 -51.93 -0.40 1.20 16 38 H 0.09 1.32 6.23 -51.93 -0.32 1.00 16 39 H 0.09 1.04 5.68 -51.93 -0.30 0.75 16 40 H 0.03 0.35 8.07 -51.93 -0.42 -0.07 16 41 H 0.12 0.90 5.68 -51.93 -0.30 0.60 16 42 H 0.08 0.59 8.00 -51.93 -0.42 0.17 16 LS Contribution 346.36 15.07 5.22 5.22 Total: -1.00 -28.25 346.36 -5.81 -34.06 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: -4.93 Total: 9.43 kcal Atomic # 6 Polarization: 8.93 SS G_CDS: 0.14 Total: 9.07 kcal Atomic # 7 Polarization: -39.95 SS G_CDS: -0.95 Total: -40.90 kcal Atomic # 8 Polarization: -25.41 SS G_CDS: -0.37 Total: -25.79 kcal Atomic # 9 Polarization: -5.95 SS G_CDS: 0.11 Total: -5.84 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.02 Total: 14.75 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -28.25 -5.81 -34.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592850477.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -187.496 kcal (2) G-P(sol) polarization free energy of solvation -28.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -215.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -221.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds