Wall clock time and date at job start Fri Apr 10 2020 18:32:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47183 * 2 1 4 4 C 1.50708 * 109.46967 * 119.99349 * 2 1 3 5 5 O 1.21282 * 119.99838 * 90.17228 * 4 2 1 6 6 N 1.34773 * 120.00070 * 270.17895 * 4 2 1 7 7 C 1.47426 * 125.64629 * 354.94907 * 6 4 2 8 8 C 1.54917 * 104.83000 * 155.91437 * 7 6 4 9 9 C 1.55147 * 101.58479 * 37.00559 * 8 7 6 10 10 O 1.42900 * 110.72149 * 82.86139 * 9 8 7 11 11 C 1.50697 * 110.72418 * 205.95805 * 9 8 7 12 12 H 1.08007 * 119.99810 * 116.15605 * 11 9 8 13 13 C 1.37875 * 120.00253 * 296.16286 * 11 9 8 14 14 N 1.31515 * 119.99840 * 359.97438 * 13 11 9 15 15 Si 1.86799 * 120.00183 * 179.97438 * 13 11 9 16 16 H 1.48503 * 109.47022 * 89.99930 * 15 13 11 17 17 H 1.48497 * 109.46812 * 209.99804 * 15 13 11 18 18 H 1.48498 * 109.46968 * 330.00060 * 15 13 11 19 19 C 1.47020 * 125.64786 * 174.99523 * 6 4 2 20 20 N 1.46895 * 109.47263 * 239.99415 * 2 1 3 21 21 C 1.46907 * 110.99879 * 181.12773 * 20 2 1 22 22 C 1.46894 * 111.00001 * 57.17359 * 20 2 1 23 23 C 1.53001 * 109.47120 * 195.73551 * 22 20 2 24 24 F 1.39899 * 109.47197 * 53.53296 * 23 22 20 25 25 F 1.39895 * 109.47286 * 173.53534 * 23 22 20 26 26 F 1.39903 * 109.47233 * 293.53544 * 23 22 20 27 27 H 1.08997 * 109.46723 * 51.79706 * 1 2 3 28 28 H 1.09002 * 109.47021 * 171.79136 * 1 2 3 29 29 H 1.08999 * 109.47626 * 291.79561 * 1 2 3 30 30 H 1.08990 * 110.37156 * 37.07518 * 7 6 4 31 31 H 1.08997 * 110.36709 * 274.74361 * 7 6 4 32 32 H 1.09002 * 110.99713 * 278.93237 * 8 7 6 33 33 H 1.08993 * 111.03695 * 155.10172 * 8 7 6 34 34 H 0.96707 * 113.99752 * 61.45427 * 10 9 8 35 35 H 0.96998 * 120.00220 * 180.02562 * 14 13 11 36 36 H 1.08999 * 109.88627 * 61.60685 * 19 6 4 37 37 H 1.08997 * 109.88144 * 300.43714 * 19 6 4 38 38 H 1.08994 * 109.47450 * 53.74830 * 21 20 2 39 39 H 1.08994 * 109.47103 * 173.75206 * 21 20 2 40 40 H 1.09004 * 109.46864 * 293.74943 * 21 20 2 41 41 H 1.08999 * 109.47075 * 315.72887 * 22 20 2 42 42 H 1.09003 * 109.47149 * 75.73596 * 22 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 1.2306 5 8 2.2374 -1.9053 1.1998 6 7 2.2535 -0.0177 2.3654 7 6 2.1477 1.4453 2.5134 8 6 1.8761 1.6726 4.0216 9 6 2.7555 0.5690 4.6663 10 8 4.1112 1.0059 4.7818 11 6 2.2092 0.1708 6.0132 12 1 1.8478 -0.8342 6.1737 13 6 2.1707 1.0896 7.0405 14 7 2.6112 2.3132 6.8452 15 14 1.4929 0.5962 8.7098 16 1 2.5941 0.0687 9.5550 17 1 0.8879 1.7818 9.3683 18 1 0.4580 -0.4539 8.5331 19 6 2.6411 -0.5958 3.6604 20 7 2.0197 -0.6926 -1.1993 21 6 3.4880 -0.7356 -1.2198 22 6 1.4943 -0.0668 -2.4200 23 6 1.6883 -1.0162 -3.6040 24 9 1.1290 -2.2618 -3.2995 25 9 1.0584 -0.4861 -4.7350 26 9 3.0552 -1.1690 -3.8601 27 1 -0.3633 0.6356 -0.8076 28 1 -0.3633 -1.0172 -0.1467 29 1 -0.3634 0.3816 0.9542 30 1 1.3197 1.8281 1.9170 31 1 3.0814 1.9248 2.2198 32 1 0.8227 1.5195 4.2562 33 1 2.2034 2.6646 4.3329 34 1 4.2269 1.7851 5.3426 35 1 2.5845 2.9595 7.5680 36 1 3.6023 -1.1014 3.5678 37 1 1.8798 -1.3007 3.9944 38 1 3.8519 -1.1663 -0.2871 39 1 3.8219 -1.3478 -2.0574 40 1 3.8795 0.2757 -1.3301 41 1 0.4322 0.1427 -2.2927 42 1 2.0282 0.8644 -2.6097 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592850477.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:21 Heat of formation + Delta-G solvation = -242.173837 kcal Electronic energy + Delta-G solvation = -29117.258815 eV Core-core repulsion = 24488.954374 eV Total energy + Delta-G solvation = -4628.304442 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.145 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -51.04249 -48.61143 -48.47259 -41.41725 -39.46921 -38.04199 -36.11392 -34.18054 -32.90406 -31.21651 -30.62209 -30.03319 -27.25998 -26.15993 -25.21981 -23.88212 -22.70841 -21.42725 -20.14871 -19.52155 -19.34685 -19.18491 -18.74444 -17.86724 -17.33690 -16.92821 -16.45901 -16.27960 -16.05666 -15.87058 -15.50477 -15.45098 -15.27353 -14.97604 -14.77207 -14.72349 -14.69085 -14.58809 -13.99449 -13.85466 -13.74326 -13.35149 -13.24670 -13.18559 -13.12363 -12.98089 -12.69414 -12.58367 -12.53723 -12.42880 -12.26966 -12.26045 -11.96995 -11.28340 -10.81644 -10.60289 -10.14308 -9.66270 -9.58140 -8.25204 -6.38551 1.41362 1.44985 1.48030 1.53294 1.70968 1.95900 2.39160 2.54511 2.89101 3.00621 3.09473 3.36194 3.48040 3.85661 3.95730 3.97497 4.01839 4.03014 4.17727 4.26783 4.38046 4.40091 4.45606 4.58504 4.64968 4.69659 4.80309 4.90604 4.95080 5.16475 5.20881 5.23189 5.45894 5.53776 5.59378 5.66120 5.76860 6.08493 6.58254 6.65797 7.15221 7.31792 7.42722 8.81035 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.033515 B = 0.002735 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.243277 B =10236.386635 C =10289.218530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.082 3.918 3 H 0.094 0.906 4 C 0.523 3.477 5 O -0.574 6.574 6 N -0.611 5.611 7 C 0.103 3.897 8 C -0.126 4.126 9 C 0.235 3.765 10 O -0.594 6.594 11 C -0.563 4.563 12 H 0.049 0.951 13 C 0.039 3.961 14 N -0.905 5.905 15 Si 0.957 3.043 16 H -0.280 1.280 17 H -0.276 1.276 18 H -0.275 1.275 19 C 0.131 3.869 20 N -0.536 5.536 21 C 0.008 3.992 22 C 0.007 3.993 23 C 0.457 3.543 24 F -0.186 7.186 25 F -0.181 7.181 26 F -0.190 7.190 27 H 0.108 0.892 28 H 0.061 0.939 29 H 0.073 0.927 30 H 0.106 0.894 31 H 0.071 0.929 32 H 0.061 0.939 33 H 0.079 0.921 34 H 0.381 0.619 35 H 0.272 0.728 36 H 0.038 0.962 37 H 0.057 0.943 38 H 0.049 0.951 39 H 0.086 0.914 40 H 0.054 0.946 41 H 0.149 0.851 42 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.733 3.834 -18.789 19.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.029 4.029 3 H 0.112 0.888 4 C 0.312 3.688 5 O -0.453 6.453 6 N -0.344 5.344 7 C -0.019 4.019 8 C -0.165 4.165 9 C 0.195 3.805 10 O -0.404 6.404 11 C -0.601 4.601 12 H 0.068 0.932 13 C -0.162 4.162 14 N -0.544 5.544 15 Si 0.783 3.217 16 H -0.206 1.206 17 H -0.201 1.201 18 H -0.199 1.199 19 C 0.008 3.992 20 N -0.262 5.262 21 C -0.140 4.140 22 C -0.121 4.121 23 C 0.402 3.598 24 F -0.168 7.168 25 F -0.163 7.163 26 F -0.172 7.172 27 H 0.127 0.873 28 H 0.081 0.919 29 H 0.092 0.908 30 H 0.124 0.876 31 H 0.089 0.911 32 H 0.080 0.920 33 H 0.097 0.903 34 H 0.231 0.769 35 H 0.082 0.918 36 H 0.057 0.943 37 H 0.076 0.924 38 H 0.068 0.932 39 H 0.105 0.895 40 H 0.072 0.928 41 H 0.166 0.834 42 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -4.677 2.324 -19.190 19.888 hybrid contribution 0.323 0.442 1.529 1.625 sum -4.353 2.766 -17.661 18.398 Atomic orbital electron populations 1.21927 0.89622 1.04022 1.04633 1.21604 0.98858 0.96287 0.86122 0.88803 1.20734 0.77156 0.86963 0.83972 1.90673 1.53357 1.16872 1.84378 1.48717 1.67120 1.09414 1.09200 1.22574 1.02192 0.78871 0.98260 1.23086 1.00146 1.00717 0.92524 1.19591 0.80090 0.89432 0.91348 1.86114 1.29184 1.51997 1.73083 1.21727 1.42922 0.98073 0.97378 0.93243 1.25537 0.94336 0.94689 1.01653 1.69683 1.46595 1.03971 1.34112 0.85580 0.78459 0.77972 0.79726 1.20632 1.20073 1.19947 1.21748 0.98031 0.96577 0.82893 1.61425 1.10334 1.53882 1.00525 1.22761 0.85921 1.01841 1.03465 1.23487 1.07397 0.94825 0.86441 1.20706 0.73281 0.81150 0.84658 1.93196 1.85138 1.45400 1.93056 1.93187 1.82339 1.86122 1.54642 1.93112 1.33125 1.96109 1.94828 0.87343 0.91948 0.90759 0.87631 0.91108 0.92046 0.90283 0.76875 0.91837 0.94348 0.92434 0.93231 0.89517 0.92796 0.83373 0.86924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 8.65 71.98 0.62 -1.90 16 2 C 0.08 1.85 1.88 44.17 0.08 1.93 16 3 H 0.09 1.63 7.00 -2.39 -0.02 1.61 16 4 C 0.52 17.99 5.82 87.66 0.51 18.51 16 5 O -0.57 -24.83 16.01 -3.04 -0.05 -24.88 16 6 N -0.61 -22.23 3.33 -811.78 -2.70 -24.93 16 7 C 0.10 3.15 6.34 86.86 0.55 3.70 16 8 C -0.13 -4.97 5.57 31.99 0.18 -4.79 16 9 C 0.24 11.05 0.85 -10.35 -0.01 11.04 16 10 O -0.59 -29.38 13.06 -148.98 -1.95 -31.33 16 11 C -0.56 -29.17 8.22 25.60 0.21 -28.96 16 12 H 0.05 2.63 7.56 -2.91 -0.02 2.61 16 13 C 0.04 1.97 5.29 84.65 0.45 2.42 16 14 N -0.90 -44.63 10.69 21.45 0.23 -44.40 16 15 Si 0.96 40.54 29.54 68.60 2.03 42.57 16 16 H -0.28 -11.94 7.11 99.48 0.71 -11.24 16 17 H -0.28 -11.21 7.11 99.48 0.71 -10.51 16 18 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 19 C 0.13 5.86 6.23 86.73 0.54 6.40 16 20 N -0.54 -12.06 4.13 -901.47 -3.73 -15.79 16 21 C 0.01 0.18 8.84 127.69 1.13 1.31 16 22 C 0.01 0.10 4.92 86.30 0.42 0.53 16 23 C 0.46 8.32 3.23 71.98 0.23 8.55 16 24 F -0.19 -4.42 17.12 44.97 0.77 -3.65 16 25 F -0.18 -3.04 17.32 44.97 0.78 -2.27 16 26 F -0.19 -3.87 14.55 44.97 0.65 -3.21 16 27 H 0.11 0.99 6.51 -2.39 -0.02 0.98 16 28 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.07 1.34 8.12 -2.39 -0.02 1.32 16 30 H 0.11 2.32 7.35 -2.39 -0.02 2.30 16 31 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.06 2.48 8.04 -2.39 -0.02 2.46 16 33 H 0.08 3.24 7.64 -2.39 -0.02 3.23 16 34 H 0.38 18.80 7.28 -74.05 -0.54 18.26 16 35 H 0.27 12.78 8.31 -92.71 -0.77 12.01 16 36 H 0.04 1.85 8.07 -2.39 -0.02 1.83 16 37 H 0.06 2.69 7.66 -2.39 -0.02 2.67 16 38 H 0.05 1.54 6.23 -2.39 -0.01 1.53 16 39 H 0.09 2.02 5.68 -2.39 -0.01 2.01 16 40 H 0.05 1.02 8.07 -2.39 -0.02 1.00 16 41 H 0.15 1.36 5.68 -2.39 -0.01 1.35 16 42 H 0.11 0.99 8.00 -2.39 -0.02 0.97 16 Total: -1.00 -63.83 346.36 1.48 -62.34 By element: Atomic # 1 Polarization: 26.29 SS G_CDS: 0.53 Total: 26.82 kcal Atomic # 6 Polarization: 13.80 SS G_CDS: 4.92 Total: 18.72 kcal Atomic # 7 Polarization: -78.92 SS G_CDS: -6.20 Total: -85.12 kcal Atomic # 8 Polarization: -54.21 SS G_CDS: -1.99 Total: -56.21 kcal Atomic # 9 Polarization: -11.33 SS G_CDS: 2.20 Total: -9.13 kcal Atomic # 14 Polarization: 40.54 SS G_CDS: 2.03 Total: 42.57 kcal Total: -63.83 1.48 -62.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592850477.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -179.831 kcal (2) G-P(sol) polarization free energy of solvation -63.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -243.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -242.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds