Wall clock time and date at job start Fri Apr 10 2020 18:32:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00175 * 2 1 4 4 H 1.48504 * 109.47032 * 179.72499 * 3 2 1 5 5 H 1.48497 * 109.46816 * 299.72616 * 3 2 1 6 6 H 1.48495 * 109.46630 * 59.72404 * 3 2 1 7 7 C 1.37885 * 119.99913 * 179.72292 * 2 1 3 8 8 H 1.08000 * 119.99535 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99902 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.50642 * 60.08041 * 9 7 2 11 11 C 1.53122 * 109.50317 * 299.99839 * 9 7 2 12 12 C 1.53120 * 109.15950 * 182.40396 * 11 9 7 13 13 C 1.53038 * 109.27722 * 57.65781 * 12 11 9 14 14 N 1.46857 * 109.52383 * 300.81821 * 13 12 11 15 15 C 1.46900 * 111.00128 * 185.84347 * 14 13 12 16 16 C 1.53000 * 109.46739 * 293.95021 * 15 14 13 17 17 H 1.08999 * 109.47462 * 305.00531 * 16 15 14 18 18 O 1.42908 * 109.47122 * 65.00615 * 16 15 14 19 19 C 1.53003 * 109.46854 * 184.99930 * 16 15 14 20 20 N 1.46507 * 109.46631 * 174.99923 * 19 16 15 21 21 C 1.34945 * 126.03267 * 125.00583 * 20 19 16 22 22 C 1.35315 * 107.74678 * 179.97438 * 21 20 19 23 23 N 1.48031 * 126.04089 * 180.02562 * 22 21 20 24 24 O 1.21801 * 119.99663 * 359.97438 * 23 22 21 25 25 O 1.21789 * 119.99561 * 179.97438 * 23 22 21 26 26 C 1.39868 * 107.92130 * 359.97438 * 22 21 20 27 27 N 1.30844 * 108.19683 * 359.74032 * 26 22 21 28 28 C 1.46844 * 111.19564 * 61.74210 * 14 13 12 29 29 H 0.97001 * 119.99646 * 0.28069 * 1 2 3 30 30 H 1.08995 * 109.51986 * 302.30781 * 11 9 7 31 31 H 1.09001 * 109.52196 * 62.44059 * 11 9 7 32 32 H 1.08998 * 109.50433 * 177.59203 * 12 11 9 33 33 H 1.08997 * 109.50671 * 297.71818 * 12 11 9 34 34 H 1.09000 * 109.46729 * 60.83435 * 13 12 11 35 35 H 1.08999 * 109.46503 * 180.80431 * 13 12 11 36 36 H 1.09000 * 109.47383 * 53.94742 * 15 14 13 37 37 H 1.08995 * 109.47093 * 173.95746 * 15 14 13 38 38 H 0.96692 * 113.99869 * 59.99550 * 18 16 15 39 39 H 1.08996 * 109.47004 * 295.00070 * 19 16 15 40 40 H 1.08997 * 109.47079 * 55.00648 * 19 16 15 41 41 H 1.08003 * 126.12890 * 359.95272 * 21 20 19 42 42 H 1.07997 * 125.90303 * 179.97438 * 26 22 21 43 43 H 1.08998 * 109.45948 * 178.24568 * 28 14 13 44 44 H 1.09001 * 109.46423 * 58.27695 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0067 5 1 1.8955 2.3935 -1.2158 6 1 1.8854 2.3993 1.2091 7 6 2.0046 -1.1941 0.0058 8 1 3.0846 -1.1940 0.0062 9 6 1.2511 -2.4991 0.0115 10 1 0.6256 -2.5622 -0.8790 11 6 0.3700 -2.5752 1.2615 12 6 -0.3457 -3.9285 1.2902 13 6 0.6944 -5.0508 1.2639 14 7 1.5112 -4.9346 0.0490 15 6 2.4286 -6.0746 -0.0796 16 6 3.4550 -6.0336 1.0543 17 1 3.9595 -5.0674 1.0530 18 8 2.7906 -6.2225 2.3053 19 6 4.4846 -7.1469 0.8506 20 7 5.5334 -7.0340 1.8674 21 6 5.9210 -8.0061 2.7193 22 6 6.9113 -7.5052 3.4935 23 7 7.6298 -8.2302 4.5658 24 8 7.3428 -9.3870 4.8167 25 8 8.5078 -7.6698 5.1969 26 6 7.1371 -6.1819 3.1009 27 7 6.3156 -5.9003 2.1222 28 6 2.2449 -3.6629 0.0222 29 1 -0.4850 0.8401 -0.0041 30 1 0.9908 -2.4726 2.1515 31 1 -0.3672 -1.7727 1.2370 32 1 -0.9415 -4.0059 2.1997 33 1 -0.9962 -4.0148 0.4199 34 1 1.3358 -4.9723 2.1417 35 1 0.1876 -6.0159 1.2698 36 1 1.8627 -7.0046 -0.0240 37 1 2.9441 -6.0197 -1.0384 38 1 2.3193 -7.0637 2.3773 39 1 3.9943 -8.1162 0.9404 40 1 4.9283 -7.0545 -0.1407 41 1 5.5136 -9.0048 2.7738 42 1 7.8662 -5.5099 3.5289 43 1 2.8642 -3.6198 -0.8737 44 1 2.8791 -3.5908 0.9058 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595615441.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:27 Heat of formation + Delta-G solvation = 29.883957 kcal Electronic energy + Delta-G solvation = -27856.795239 eV Core-core repulsion = 23814.437600 eV Total energy + Delta-G solvation = -4042.357639 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.65676 -41.58609 -39.43850 -36.96259 -36.63544 -34.07572 -33.69543 -32.02412 -31.59902 -29.91510 -29.80045 -26.80138 -25.49052 -24.99609 -23.50506 -21.95551 -21.76251 -21.42693 -21.29260 -19.38810 -18.66991 -18.62809 -17.71813 -17.34156 -16.68974 -16.35682 -16.29022 -15.56884 -15.06792 -14.82917 -14.61858 -14.36763 -14.13837 -13.85906 -13.24357 -13.08738 -12.65208 -12.43978 -12.23504 -11.96985 -11.84031 -11.69254 -11.50387 -11.32741 -11.27860 -11.23502 -11.15645 -10.96096 -10.67196 -10.60006 -10.34370 -10.05836 -9.86719 -9.74654 -9.49815 -9.11644 -8.74216 -8.33642 -7.66904 -6.00799 -4.07097 0.04068 0.96683 1.12030 1.86366 1.99954 3.27811 3.36123 3.39687 3.54709 3.81530 3.92753 4.08076 4.22129 4.34400 4.46639 4.50753 4.63351 4.74259 4.87998 4.98542 5.29578 5.41626 5.54770 5.62365 5.70608 5.87278 5.89428 6.10343 6.22347 6.28412 6.32553 6.46874 6.66840 6.70117 6.73711 6.89295 7.15318 7.24107 7.34023 7.53995 7.54234 7.67181 7.74144 8.03029 8.13539 8.43667 8.96969 9.57590 11.05153 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.015547 B = 0.002865 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.565292 B = 9770.172329 C =10865.620067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.063 3.937 3 Si 0.889 3.111 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.515 4.515 8 H 0.053 0.947 9 C 0.056 3.944 10 H 0.032 0.968 11 C -0.110 4.110 12 C -0.119 4.119 13 C 0.048 3.952 14 N -0.527 5.527 15 C 0.029 3.971 16 C 0.053 3.947 17 H 0.124 0.876 18 O -0.542 6.542 19 C 0.093 3.907 20 N -0.333 5.333 21 C 0.152 3.848 22 C -0.196 4.196 23 N 0.072 4.928 24 O -0.181 6.181 25 O -0.166 6.166 26 C 0.112 3.888 27 N -0.255 5.255 28 C 0.063 3.937 29 H 0.259 0.741 30 H 0.030 0.970 31 H 0.090 0.910 32 H 0.045 0.955 33 H 0.056 0.944 34 H 0.062 0.938 35 H 0.049 0.951 36 H 0.074 0.926 37 H 0.084 0.916 38 H 0.368 0.632 39 H 0.110 0.890 40 H 0.110 0.890 41 H 0.202 0.798 42 H 0.209 0.791 43 H 0.057 0.943 44 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.783 -18.894 2.252 20.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.138 4.138 3 Si 0.717 3.283 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.554 4.554 8 H 0.072 0.928 9 C 0.038 3.962 10 H 0.051 0.949 11 C -0.148 4.148 12 C -0.157 4.157 13 C -0.079 4.079 14 N -0.249 5.249 15 C -0.101 4.101 16 C -0.009 4.009 17 H 0.142 0.858 18 O -0.347 6.347 19 C -0.027 4.027 20 N -0.110 5.110 21 C -0.003 4.003 22 C -0.294 4.294 23 N 0.587 4.413 24 O -0.391 6.391 25 O -0.380 6.380 26 C -0.078 4.078 27 N -0.075 5.075 28 C -0.064 4.064 29 H 0.069 0.931 30 H 0.048 0.952 31 H 0.108 0.892 32 H 0.063 0.937 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.068 0.932 36 H 0.093 0.907 37 H 0.102 0.898 38 H 0.216 0.784 39 H 0.128 0.872 40 H 0.128 0.872 41 H 0.219 0.781 42 H 0.226 0.774 43 H 0.075 0.925 44 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 6.675 -16.944 0.489 18.218 hybrid contribution 1.250 -0.461 1.371 1.911 sum 7.925 -17.405 1.860 19.215 Atomic orbital electron populations 1.69900 1.05852 1.26248 1.50682 1.24934 0.94825 0.98988 0.95077 0.86580 0.80166 0.83943 0.77574 1.19823 1.21029 1.21047 1.21171 0.92826 0.90666 1.50702 0.92836 1.18642 0.92523 0.90247 0.94829 0.94940 1.21640 1.00020 0.94766 0.98424 1.21687 0.97289 0.96750 0.99938 1.22355 0.95748 0.97956 0.91890 1.62314 1.22135 1.01933 1.38530 1.22845 0.93471 0.96648 0.97136 1.23390 0.92147 0.99047 0.86277 0.85804 1.86794 1.70011 1.42223 1.35649 1.23062 0.86802 1.02742 0.90141 1.48864 1.27451 1.08121 1.26567 1.22319 0.92935 0.96230 0.88797 1.21037 1.08418 0.96408 1.03561 1.42462 0.99075 1.00238 0.99489 1.94534 1.70968 1.01180 1.72404 1.94553 1.24128 1.70037 1.49261 1.24008 0.97720 0.92950 0.93099 1.77856 1.06038 1.05985 1.17585 1.22378 0.96734 0.88552 0.98705 0.93094 0.95162 0.89179 0.93651 0.92533 0.91980 0.93246 0.90734 0.89757 0.78443 0.87179 0.87174 0.78087 0.77411 0.92463 0.95638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.16 11.35 55.43 0.63 -24.54 16 2 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 3 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 4 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.51 -13.93 8.56 -34.44 -0.29 -14.22 16 8 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 9 C 0.06 1.37 2.26 -91.69 -0.21 1.16 16 10 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 11 C -0.11 -2.58 5.02 -26.61 -0.13 -2.72 16 12 C -0.12 -2.25 6.09 -26.65 -0.16 -2.42 16 13 C 0.05 0.76 4.62 -3.83 -0.02 0.74 16 14 N -0.53 -8.45 4.86 -234.66 -1.14 -9.59 16 15 C 0.03 0.31 5.18 -3.82 -0.02 0.29 16 16 C 0.05 0.53 2.77 -26.73 -0.07 0.45 16 17 H 0.12 1.72 6.15 -51.93 -0.32 1.40 16 18 O -0.54 -5.86 9.96 -35.23 -0.35 -6.21 16 19 C 0.09 0.57 6.15 -4.04 -0.02 0.55 16 20 N -0.33 -2.88 3.62 -61.36 -0.22 -3.11 16 21 C 0.15 1.18 11.13 -17.22 -0.19 0.99 16 22 C -0.20 -2.02 7.11 -80.37 -0.57 -2.59 16 23 N 0.07 0.88 4.45 33.75 0.15 1.03 16 24 O -0.18 -2.26 19.02 -29.46 -0.56 -2.82 16 25 O -0.17 -2.19 19.05 -29.46 -0.56 -2.75 16 26 C 0.11 1.15 11.75 -17.36 -0.20 0.95 16 27 N -0.26 -2.94 12.35 30.62 0.38 -2.56 16 28 C 0.06 1.24 4.06 -3.83 -0.02 1.23 16 29 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 30 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.09 2.38 6.15 -51.93 -0.32 2.06 16 32 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.06 1.03 5.54 -51.93 -0.29 0.75 16 35 H 0.05 0.66 8.06 -51.93 -0.42 0.24 16 36 H 0.07 0.60 8.06 -51.93 -0.42 0.18 16 37 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.37 2.41 9.04 45.56 0.41 2.82 16 39 H 0.11 0.26 8.07 -51.93 -0.42 -0.16 16 40 H 0.11 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.20 0.80 8.06 -52.48 -0.42 0.38 16 42 H 0.21 1.66 8.06 -52.49 -0.42 1.23 16 43 H 0.06 1.11 8.12 -51.93 -0.42 0.69 16 44 H 0.03 0.53 6.49 -51.93 -0.34 0.19 16 LS Contribution 362.26 15.07 5.46 5.46 Total: -1.00 -33.10 362.26 -8.70 -41.80 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -5.45 Total: 1.09 kcal Atomic # 6 Polarization: -11.94 SS G_CDS: -2.01 Total: -13.95 kcal Atomic # 7 Polarization: -38.56 SS G_CDS: -0.20 Total: -38.77 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: -1.47 Total: -11.78 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.10 -8.70 -41.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595615441.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.684 kcal (2) G-P(sol) polarization free energy of solvation -33.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds