Wall clock time and date at job start Fri Apr 10 2020 18:32:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00175 * 2 1 4 4 H 1.48504 * 109.47032 * 179.72499 * 3 2 1 5 5 H 1.48497 * 109.46816 * 299.72616 * 3 2 1 6 6 H 1.48495 * 109.46630 * 59.72404 * 3 2 1 7 7 C 1.37885 * 119.99913 * 179.72292 * 2 1 3 8 8 H 1.08000 * 119.99535 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99902 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.50642 * 60.08041 * 9 7 2 11 11 C 1.53122 * 109.50317 * 299.99839 * 9 7 2 12 12 C 1.53120 * 109.15950 * 182.40396 * 11 9 7 13 13 C 1.53038 * 109.27722 * 57.65781 * 12 11 9 14 14 N 1.46857 * 109.52383 * 300.81821 * 13 12 11 15 15 C 1.46900 * 111.00128 * 185.84347 * 14 13 12 16 16 C 1.53000 * 109.46739 * 293.95021 * 15 14 13 17 17 H 1.08999 * 109.47462 * 305.00531 * 16 15 14 18 18 O 1.42908 * 109.47122 * 65.00615 * 16 15 14 19 19 C 1.53003 * 109.46854 * 184.99930 * 16 15 14 20 20 N 1.46507 * 109.46631 * 174.99923 * 19 16 15 21 21 C 1.34945 * 126.03267 * 125.00583 * 20 19 16 22 22 C 1.35315 * 107.74678 * 179.97438 * 21 20 19 23 23 N 1.48031 * 126.04089 * 180.02562 * 22 21 20 24 24 O 1.21801 * 119.99663 * 359.97438 * 23 22 21 25 25 O 1.21789 * 119.99561 * 179.97438 * 23 22 21 26 26 C 1.39868 * 107.92130 * 359.97438 * 22 21 20 27 27 N 1.30844 * 108.19683 * 359.74032 * 26 22 21 28 28 C 1.46844 * 111.19564 * 61.74210 * 14 13 12 29 29 H 0.97001 * 119.99646 * 0.28069 * 1 2 3 30 30 H 1.08995 * 109.51986 * 302.30781 * 11 9 7 31 31 H 1.09001 * 109.52196 * 62.44059 * 11 9 7 32 32 H 1.08998 * 109.50433 * 177.59203 * 12 11 9 33 33 H 1.08997 * 109.50671 * 297.71818 * 12 11 9 34 34 H 1.09000 * 109.46729 * 60.83435 * 13 12 11 35 35 H 1.08999 * 109.46503 * 180.80431 * 13 12 11 36 36 H 1.09000 * 109.47383 * 53.94742 * 15 14 13 37 37 H 1.08995 * 109.47093 * 173.95746 * 15 14 13 38 38 H 0.96692 * 113.99869 * 59.99550 * 18 16 15 39 39 H 1.08996 * 109.47004 * 295.00070 * 19 16 15 40 40 H 1.08997 * 109.47079 * 55.00648 * 19 16 15 41 41 H 1.08003 * 126.12890 * 359.95272 * 21 20 19 42 42 H 1.07997 * 125.90303 * 179.97438 * 26 22 21 43 43 H 1.08998 * 109.45948 * 178.24568 * 28 14 13 44 44 H 1.09001 * 109.46423 * 58.27695 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0067 5 1 1.8955 2.3935 -1.2158 6 1 1.8854 2.3993 1.2091 7 6 2.0046 -1.1941 0.0058 8 1 3.0846 -1.1940 0.0062 9 6 1.2511 -2.4991 0.0115 10 1 0.6256 -2.5622 -0.8790 11 6 0.3700 -2.5752 1.2615 12 6 -0.3457 -3.9285 1.2902 13 6 0.6944 -5.0508 1.2639 14 7 1.5112 -4.9346 0.0490 15 6 2.4286 -6.0746 -0.0796 16 6 3.4550 -6.0336 1.0543 17 1 3.9595 -5.0674 1.0530 18 8 2.7906 -6.2225 2.3053 19 6 4.4846 -7.1469 0.8506 20 7 5.5334 -7.0340 1.8674 21 6 5.9210 -8.0061 2.7193 22 6 6.9113 -7.5052 3.4935 23 7 7.6298 -8.2302 4.5658 24 8 7.3428 -9.3870 4.8167 25 8 8.5078 -7.6698 5.1969 26 6 7.1371 -6.1819 3.1009 27 7 6.3156 -5.9003 2.1222 28 6 2.2449 -3.6629 0.0222 29 1 -0.4850 0.8401 -0.0041 30 1 0.9908 -2.4726 2.1515 31 1 -0.3672 -1.7727 1.2370 32 1 -0.9415 -4.0059 2.1997 33 1 -0.9962 -4.0148 0.4199 34 1 1.3358 -4.9723 2.1417 35 1 0.1876 -6.0159 1.2698 36 1 1.8627 -7.0046 -0.0240 37 1 2.9441 -6.0197 -1.0384 38 1 2.3193 -7.0637 2.3773 39 1 3.9943 -8.1162 0.9404 40 1 4.9283 -7.0545 -0.1407 41 1 5.5136 -9.0048 2.7738 42 1 7.8662 -5.5099 3.5289 43 1 2.8642 -3.6198 -0.8737 44 1 2.8791 -3.5908 0.9058 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595615441.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:26 Heat of formation + Delta-G solvation = 5.373736 kcal Electronic energy + Delta-G solvation = -27857.858082 eV Core-core repulsion = 23814.437600 eV Total energy + Delta-G solvation = -4043.420482 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.42890 -42.38574 -40.53987 -38.14694 -37.54529 -35.38009 -34.74763 -33.56906 -32.34889 -31.66380 -30.72065 -27.73048 -26.95677 -26.35830 -24.57280 -23.13654 -22.80307 -22.55086 -22.25948 -20.26449 -20.14469 -19.51377 -18.59155 -18.55243 -17.90876 -17.32936 -17.10025 -16.76279 -16.27443 -15.93964 -15.73659 -15.55546 -15.34342 -14.88003 -14.50542 -14.33823 -14.07052 -13.79118 -13.39254 -13.26876 -12.94205 -12.85015 -12.71865 -12.59508 -12.56869 -12.35912 -12.23650 -12.23389 -11.99336 -11.97497 -11.75539 -11.42230 -11.37358 -11.01689 -10.87114 -10.67674 -10.52981 -10.39511 -8.89448 -8.11657 -6.25613 -0.79933 0.23931 0.41149 1.21127 1.22801 1.35980 1.38078 1.49036 2.39216 2.92012 3.12879 3.15326 3.29161 3.37816 3.48341 3.70817 3.87964 3.98389 4.11717 4.21998 4.27826 4.35388 4.41610 4.42602 4.63733 4.70300 4.79777 4.83816 4.92240 5.05301 5.08440 5.16250 5.23332 5.26648 5.41486 5.43369 5.51905 5.61207 5.95689 5.96527 6.10220 6.18976 6.40259 6.44224 6.60191 6.77994 6.88080 7.42457 8.92905 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.015547 B = 0.002865 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.565292 B = 9770.172329 C =10865.620067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.014 3.986 3 Si 0.951 3.049 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.281 1.281 7 C -0.536 4.536 8 H 0.048 0.952 9 C 0.053 3.947 10 H -0.004 1.004 11 C -0.103 4.103 12 C -0.115 4.115 13 C 0.057 3.943 14 N -0.540 5.540 15 C 0.030 3.970 16 C 0.063 3.937 17 H 0.076 0.924 18 O -0.565 6.565 19 C 0.095 3.905 20 N -0.330 5.330 21 C 0.179 3.821 22 C -0.218 4.218 23 N 0.076 4.924 24 O -0.176 6.176 25 O -0.209 6.209 26 C 0.107 3.893 27 N -0.296 5.296 28 C 0.085 3.915 29 H 0.260 0.740 30 H 0.013 0.987 31 H 0.053 0.947 32 H 0.062 0.938 33 H 0.046 0.954 34 H 0.058 0.942 35 H 0.091 0.909 36 H 0.117 0.883 37 H 0.094 0.906 38 H 0.390 0.610 39 H 0.165 0.835 40 H 0.124 0.876 41 H 0.248 0.752 42 H 0.216 0.784 43 H 0.054 0.946 44 H 0.012 0.988 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.637 -22.024 1.757 23.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.185 4.185 3 Si 0.777 3.223 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.207 1.207 7 C -0.574 4.574 8 H 0.066 0.934 9 C 0.034 3.966 10 H 0.014 0.986 11 C -0.142 4.142 12 C -0.153 4.153 13 C -0.070 4.070 14 N -0.262 5.262 15 C -0.099 4.099 16 C 0.001 3.999 17 H 0.094 0.906 18 O -0.373 6.373 19 C -0.025 4.025 20 N -0.107 5.107 21 C 0.023 3.977 22 C -0.317 4.317 23 N 0.586 4.414 24 O -0.390 6.390 25 O -0.413 6.413 26 C -0.082 4.082 27 N -0.115 5.115 28 C -0.043 4.043 29 H 0.069 0.931 30 H 0.032 0.968 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.065 0.935 34 H 0.076 0.924 35 H 0.109 0.891 36 H 0.135 0.865 37 H 0.113 0.887 38 H 0.240 0.760 39 H 0.183 0.817 40 H 0.142 0.858 41 H 0.264 0.736 42 H 0.233 0.767 43 H 0.073 0.927 44 H 0.030 0.970 Dipole moment (debyes) X Y Z Total from point charges 6.580 -20.055 0.014 21.107 hybrid contribution 1.189 0.465 1.464 1.943 sum 7.769 -19.590 1.479 21.126 Atomic orbital electron populations 1.70041 1.07116 1.26963 1.51333 1.25709 0.95658 1.02284 0.94843 0.85616 0.79079 0.79956 0.77688 1.19296 1.20330 1.20725 1.21566 0.92835 0.92455 1.50592 0.93414 1.18569 0.93025 0.91514 0.93493 0.98604 1.21436 0.98951 0.96650 0.97128 1.21630 0.98000 0.95375 1.00327 1.22292 0.94796 0.98208 0.91680 1.62172 1.23423 1.01876 1.38773 1.22997 0.93340 0.95683 0.97870 1.22982 0.92639 0.98507 0.85757 0.90557 1.86753 1.70569 1.44117 1.35870 1.23281 0.85428 1.03619 0.90132 1.49050 1.27279 1.07471 1.26873 1.22980 0.90993 0.97255 0.86447 1.21196 1.09840 0.96592 1.04090 1.42665 0.98898 1.00174 0.99672 1.94498 1.70610 1.01505 1.72399 1.94557 1.25662 1.70312 1.50813 1.24249 0.97638 0.93489 0.92833 1.77830 1.07208 1.08060 1.18451 1.21896 0.95160 0.89345 0.97912 0.93080 0.96823 0.92873 0.91986 0.93481 0.92449 0.89080 0.86468 0.88724 0.76003 0.81741 0.85763 0.73634 0.76702 0.92743 0.97020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.86 11.35 21.45 0.24 -53.61 16 2 C 0.01 0.78 5.30 84.66 0.45 1.23 16 3 Si 0.95 44.49 29.54 68.60 2.03 46.52 16 4 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 5 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 6 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 7 C -0.54 -30.18 8.56 25.60 0.22 -29.96 16 8 H 0.05 2.66 7.74 -2.91 -0.02 2.64 16 9 C 0.05 2.68 2.26 -11.49 -0.03 2.65 16 10 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 11 C -0.10 -5.04 5.02 30.68 0.15 -4.88 16 12 C -0.12 -4.33 6.09 30.65 0.19 -4.14 16 13 C 0.06 1.67 4.62 86.32 0.40 2.07 16 14 N -0.54 -16.26 4.86 -896.34 -4.35 -20.62 16 15 C 0.03 0.51 5.18 86.30 0.45 0.96 16 16 C 0.06 1.05 2.77 30.60 0.08 1.13 16 17 H 0.08 2.07 6.15 -2.39 -0.01 2.06 16 18 O -0.56 -10.22 9.96 -148.98 -1.48 -11.70 16 19 C 0.09 0.70 6.15 86.38 0.53 1.23 16 20 N -0.33 -4.63 3.62 -348.05 -1.26 -5.89 16 21 C 0.18 2.08 11.13 83.54 0.93 3.01 16 22 C -0.22 -4.14 7.11 36.09 0.26 -3.88 16 23 N 0.08 1.79 4.45 -47.12 -0.21 1.58 16 24 O -0.18 -4.11 19.02 18.89 0.36 -3.75 16 25 O -0.21 -5.63 19.05 18.90 0.36 -5.27 16 26 C 0.11 2.18 11.75 85.23 1.00 3.18 16 27 N -0.30 -6.54 12.35 -57.02 -0.70 -7.25 16 28 C 0.08 3.39 4.06 86.33 0.35 3.74 16 29 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 30 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.05 2.95 6.15 -2.39 -0.01 2.94 16 32 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.06 1.78 5.54 -2.39 -0.01 1.77 16 35 H 0.09 1.96 8.06 -2.39 -0.02 1.94 16 36 H 0.12 1.08 8.06 -2.39 -0.02 1.06 16 37 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.39 2.96 9.04 -74.06 -0.67 2.29 16 39 H 0.17 -0.50 8.07 -2.39 -0.02 -0.52 16 40 H 0.12 0.67 8.14 -2.39 -0.02 0.65 16 41 H 0.25 0.43 8.06 -2.91 -0.02 0.40 16 42 H 0.22 3.61 8.06 -2.91 -0.02 3.59 16 43 H 0.05 2.15 8.12 -2.39 -0.02 2.13 16 44 H 0.01 0.50 6.49 -2.39 -0.02 0.48 16 Total: -1.00 -78.81 362.26 0.32 -78.50 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: 0.36 Total: 5.16 kcal Atomic # 6 Polarization: -28.64 SS G_CDS: 4.98 Total: -23.66 kcal Atomic # 7 Polarization: -79.50 SS G_CDS: -6.29 Total: -85.79 kcal Atomic # 8 Polarization: -19.97 SS G_CDS: -0.76 Total: -20.73 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Total: -78.81 0.32 -78.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595615441.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.871 kcal (2) G-P(sol) polarization free energy of solvation -78.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds