Wall clock time and date at job start Fri Apr 10 2020 18:32:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34953 * 125.52827 * 2 1 4 4 C 1.41203 * 108.24633 * 179.97438 * 3 2 1 5 5 N 1.32929 * 126.37920 * 180.02562 * 4 3 2 6 6 C 1.33835 * 120.00203 * 359.97431 * 5 4 3 7 7 O 1.21838 * 119.99871 * 0.02562 * 6 5 4 8 8 N 1.34779 * 120.00124 * 180.02562 * 6 5 4 9 9 C 1.46503 * 120.00070 * 179.97438 * 8 6 5 10 10 C 1.52999 * 109.47285 * 179.97438 * 9 8 6 11 11 C 1.52997 * 109.47129 * 180.02562 * 10 9 8 12 12 C 1.52999 * 109.47129 * 179.97438 * 11 10 9 13 13 C 1.50701 * 109.47122 * 179.97438 * 12 11 10 14 14 O 1.20829 * 119.99665 * 359.97438 * 13 12 11 15 15 O 1.34228 * 120.00010 * 180.02562 * 13 12 11 16 16 N 1.37421 * 107.24299 * 359.72945 * 4 3 2 17 17 H 0.96999 * 126.37059 * 180.25110 * 16 4 3 18 18 N 1.36451 * 125.52366 * 179.97438 * 2 1 3 19 19 C 1.46500 * 125.85343 * 0.03053 * 18 2 1 20 20 C 1.50706 * 109.46949 * 84.99522 * 19 18 2 21 21 H 1.07995 * 120.00167 * 359.72205 * 20 19 18 22 22 C 1.37879 * 119.99394 * 179.97438 * 20 19 18 23 23 N 1.31514 * 120.00338 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99424 * 180.02562 * 22 20 19 25 25 H 1.48490 * 109.47405 * 60.00219 * 24 22 20 26 26 H 1.48503 * 109.46845 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.47399 * 299.99813 * 24 22 20 28 28 H 1.08995 * 109.47688 * 270.02995 * 1 2 3 29 29 H 1.09005 * 109.46676 * 30.02468 * 1 2 3 30 30 H 1.09000 * 109.47361 * 150.02310 * 1 2 3 31 31 H 1.08002 * 125.87631 * 0.02562 * 3 2 1 32 32 H 0.97003 * 119.99912 * 359.97438 * 8 6 5 33 33 H 1.08997 * 109.47001 * 300.00507 * 9 8 6 34 34 H 1.09002 * 109.46989 * 59.99672 * 9 8 6 35 35 H 1.08997 * 109.46928 * 300.00162 * 10 9 8 36 36 H 1.08994 * 109.46629 * 59.99873 * 10 9 8 37 37 H 1.09009 * 109.47038 * 300.00124 * 11 10 9 38 38 H 1.09002 * 109.47218 * 59.99806 * 11 10 9 39 39 H 1.08997 * 109.46928 * 299.99977 * 12 11 10 40 40 H 1.09002 * 109.47229 * 59.99813 * 12 11 10 41 41 H 0.96696 * 117.00014 * 179.97438 * 15 13 12 42 42 H 1.09000 * 109.47175 * 324.99547 * 19 18 2 43 43 H 1.09001 * 109.47297 * 204.99055 * 19 18 2 44 44 H 0.96996 * 119.99730 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2912 1.0983 0.0000 4 6 3.6395 0.6788 0.0006 5 7 4.7103 1.4665 0.0013 6 6 4.5626 2.7967 0.0009 7 8 3.4466 3.2856 0.0004 8 7 5.6483 3.5953 0.0010 9 6 5.4865 5.0514 0.0001 10 6 6.8639 5.7175 0.0011 11 6 6.6950 7.2381 0.0007 12 6 8.0723 7.9043 0.0024 13 6 7.9060 9.4021 0.0014 14 8 6.7992 9.8869 -0.0009 15 8 8.9872 10.1975 0.0021 16 7 3.6386 -0.6954 0.0072 17 1 4.4192 -1.2711 0.0125 18 7 2.2998 -1.1105 0.0005 19 6 1.8320 -2.4988 0.0005 20 6 1.5547 -2.9355 -1.4150 21 1 1.7071 -2.2462 -2.2324 22 6 1.1016 -4.2133 -1.6660 23 7 0.9109 -5.0508 -0.6702 24 14 0.7587 -4.7547 -3.4206 25 1 2.0039 -4.6516 -4.2229 26 1 0.2843 -6.1619 -3.4206 27 1 -0.2857 -3.8809 -4.0132 28 1 -0.3634 0.0005 1.0276 29 1 -0.3633 0.8898 -0.5143 30 1 -0.3634 -0.8902 -0.5135 31 1 1.9468 2.1219 0.0004 32 1 6.5367 3.2060 0.0018 33 1 4.9362 5.3552 -0.8904 34 1 4.9352 5.3563 0.8895 35 1 7.4138 5.4136 0.8918 36 1 7.4155 5.4126 -0.8881 37 1 6.1448 7.5424 -0.8898 38 1 6.1434 7.5427 0.8902 39 1 8.6220 7.6000 0.8931 40 1 8.6243 7.5998 -0.8868 41 1 8.8303 11.1516 0.0010 42 1 0.9180 -2.5743 0.5896 43 1 2.5985 -3.1406 0.4351 44 1 0.5918 -5.9496 -0.8468 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596064446.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:31 Heat of formation + Delta-G solvation = -67.167511 kcal Electronic energy + Delta-G solvation = -25782.213523 eV Core-core repulsion = 21735.647417 eV Total energy + Delta-G solvation = -4046.566106 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.34653 -41.20028 -40.30458 -37.42526 -36.90420 -35.95241 -34.78487 -34.51125 -33.63998 -32.31112 -30.45053 -28.79206 -28.35889 -25.99380 -24.77700 -23.25364 -22.47933 -21.70814 -21.13647 -20.85562 -19.06459 -18.92645 -18.61847 -17.73015 -17.34619 -17.25707 -17.06399 -16.65603 -16.53165 -16.22083 -15.65046 -15.39985 -15.33636 -14.42079 -14.32883 -14.28833 -14.18727 -14.12375 -13.69219 -13.64428 -13.30068 -13.19810 -12.98024 -12.71493 -12.70319 -12.60699 -12.43914 -12.27525 -12.10440 -12.05015 -11.58684 -11.56323 -11.20152 -11.08484 -10.75569 -10.29395 -9.90928 -9.87072 -8.52679 -8.19207 -6.54071 0.29527 0.59550 1.26534 1.40396 1.43025 1.50042 1.64119 2.15011 2.31441 2.44880 2.94503 3.05265 3.16991 3.71848 3.76529 4.01680 4.17030 4.21882 4.30914 4.34896 4.38945 4.58327 4.68170 4.76845 4.77887 4.83297 4.85143 4.85841 4.91816 4.98425 5.07403 5.14541 5.30573 5.32592 5.39580 5.52932 5.68109 5.72492 5.79737 6.01134 6.17706 6.38636 6.61672 6.94347 7.03198 7.05674 7.19516 8.16167 8.68160 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.032353 B = 0.001656 C = 0.001638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.237273 B =16908.084657 C =17094.631167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.197 3.803 3 C -0.350 4.350 4 C 0.474 3.526 5 N -0.721 5.721 6 C 0.668 3.332 7 O -0.664 6.664 8 N -0.718 5.718 9 C 0.137 3.863 10 C -0.113 4.113 11 C -0.104 4.104 12 C -0.108 4.108 13 C 0.479 3.521 14 O -0.561 6.561 15 O -0.516 6.516 16 N -0.467 5.467 17 H 0.452 0.548 18 N -0.351 5.351 19 C 0.269 3.731 20 C -0.564 4.564 21 H 0.057 0.943 22 C 0.033 3.967 23 N -0.911 5.911 24 Si 0.962 3.038 25 H -0.277 1.277 26 H -0.279 1.279 27 H -0.268 1.268 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.082 0.918 31 H 0.171 0.829 32 H 0.408 0.592 33 H 0.045 0.955 34 H 0.046 0.954 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.061 0.939 38 H 0.062 0.938 39 H 0.131 0.869 40 H 0.130 0.870 41 H 0.425 0.575 42 H 0.069 0.931 43 H 0.042 0.958 44 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.202 18.369 2.408 22.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.071 3.929 3 C -0.383 4.383 4 C 0.220 3.780 5 N -0.486 5.486 6 C 0.366 3.634 7 O -0.549 6.549 8 N -0.373 5.373 9 C 0.012 3.988 10 C -0.151 4.151 11 C -0.142 4.142 12 C -0.145 4.145 13 C 0.324 3.676 14 O -0.452 6.452 15 O -0.329 6.329 16 N -0.191 5.191 17 H 0.301 0.699 18 N -0.138 5.138 19 C 0.152 3.848 20 C -0.602 4.602 21 H 0.075 0.925 22 C -0.169 4.169 23 N -0.549 5.549 24 Si 0.787 3.213 25 H -0.202 1.202 26 H -0.204 1.204 27 H -0.193 1.193 28 H 0.126 0.874 29 H 0.126 0.874 30 H 0.101 0.899 31 H 0.188 0.812 32 H 0.244 0.756 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.108 0.892 36 H 0.107 0.893 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.149 0.851 40 H 0.148 0.852 41 H 0.286 0.714 42 H 0.086 0.914 43 H 0.060 0.940 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 11.981 17.641 2.472 21.467 hybrid contribution -0.213 -0.003 -0.835 0.862 sum 11.767 17.638 1.637 21.266 Atomic orbital electron populations 1.20804 0.83826 1.05475 1.05328 1.21807 0.95950 0.84549 0.90588 1.22084 0.91460 1.00170 1.24541 1.18893 0.91523 0.82523 0.85011 1.68108 1.28731 1.04136 1.47610 1.17029 0.83752 0.85229 0.77355 1.90703 1.25871 1.79106 1.59187 1.44654 1.07815 1.05694 1.79102 1.21173 0.98742 0.78264 1.00591 1.21655 0.94827 0.93847 1.04744 1.21258 0.95925 0.93858 1.03203 1.21439 1.00025 0.84701 1.08322 1.24055 0.81288 0.92138 0.70141 1.90746 1.28723 1.77945 1.47783 1.84511 1.38151 1.25288 1.85000 1.44348 0.98957 1.04581 1.71203 0.69931 1.47750 0.93072 1.07819 1.65134 1.19691 0.96154 0.70929 0.98062 1.21517 1.47464 0.98598 0.92595 0.92482 1.25561 0.94172 0.95898 1.01307 1.69953 1.44787 1.07262 1.32887 0.85539 0.78727 0.77565 0.79509 1.20231 1.20378 1.19268 0.87395 0.87393 0.89899 0.81163 0.75638 0.93703 0.93538 0.89183 0.89305 0.91973 0.91882 0.85085 0.85162 0.71366 0.91369 0.93971 0.91688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.65 9.92 71.24 0.71 -1.95 16 2 C 0.20 7.10 6.92 41.08 0.28 7.39 16 3 C -0.35 -14.04 9.41 22.24 0.21 -13.83 16 4 C 0.47 19.34 8.07 133.95 1.08 20.42 16 5 N -0.72 -29.40 10.59 -322.55 -3.42 -32.82 16 6 C 0.67 27.08 8.47 179.35 1.52 28.60 16 7 O -0.66 -30.57 13.26 -4.79 -0.06 -30.63 16 8 N -0.72 -21.48 5.56 -479.05 -2.66 -24.14 16 9 C 0.14 3.35 5.67 86.38 0.49 3.84 16 10 C -0.11 -1.53 5.33 30.59 0.16 -1.37 16 11 C -0.10 -1.42 4.50 30.59 0.14 -1.28 16 12 C -0.11 -0.91 5.81 29.85 0.17 -0.74 16 13 C 0.48 6.64 8.33 71.24 0.59 7.23 16 14 O -0.56 -12.65 16.74 21.96 0.37 -12.29 16 15 O -0.52 -4.70 13.42 -51.40 -0.69 -5.39 16 16 N -0.47 -17.38 7.38 -54.79 -0.40 -17.78 16 17 H 0.45 14.68 8.96 -213.28 -1.91 12.77 16 18 N -0.35 -13.50 3.63 -337.53 -1.23 -14.73 16 19 C 0.27 11.31 5.71 85.63 0.49 11.80 16 20 C -0.56 -26.62 9.39 25.60 0.24 -26.38 16 21 H 0.06 2.80 7.81 -2.91 -0.02 2.77 16 22 C 0.03 1.59 5.46 84.66 0.46 2.05 16 23 N -0.91 -45.59 13.29 21.45 0.28 -45.31 16 24 Si 0.96 38.81 29.54 68.60 2.03 40.84 16 25 H -0.28 -11.25 7.11 99.48 0.71 -10.54 16 26 H -0.28 -10.99 7.11 99.48 0.71 -10.28 16 27 H -0.27 -10.58 7.11 99.48 0.71 -9.87 16 28 H 0.11 2.45 8.14 -2.39 -0.02 2.43 16 29 H 0.11 2.54 8.14 -2.38 -0.02 2.52 16 30 H 0.08 2.46 7.80 -2.39 -0.02 2.44 16 31 H 0.17 7.30 5.77 -2.91 -0.02 7.28 16 32 H 0.41 10.05 8.57 -92.71 -0.79 9.26 16 33 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.05 1.26 8.14 -2.39 -0.02 1.25 16 35 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.06 1.03 8.10 -2.38 -0.02 1.01 16 38 H 0.06 1.03 8.10 -2.39 -0.02 1.01 16 39 H 0.13 0.55 8.14 -2.39 -0.02 0.53 16 40 H 0.13 0.57 8.14 -2.39 -0.02 0.55 16 41 H 0.42 0.84 9.10 -74.06 -0.67 0.17 16 42 H 0.07 2.87 7.88 -2.39 -0.02 2.85 16 43 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 44 H 0.27 13.07 8.31 -92.71 -0.77 12.30 16 Total: -1.00 -71.56 381.42 -1.56 -73.12 By element: Atomic # 1 Polarization: 35.67 SS G_CDS: -2.32 Total: 33.34 kcal Atomic # 6 Polarization: 29.23 SS G_CDS: 6.55 Total: 35.78 kcal Atomic # 7 Polarization: -127.36 SS G_CDS: -7.43 Total: -134.78 kcal Atomic # 8 Polarization: -47.92 SS G_CDS: -0.39 Total: -48.31 kcal Atomic # 14 Polarization: 38.81 SS G_CDS: 2.03 Total: 40.84 kcal Total: -71.56 -1.56 -73.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596064446.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.954 kcal (2) G-P(sol) polarization free energy of solvation -71.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds