Wall clock time and date at job start Fri Apr 10 2020 18:32:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34223 * 116.99982 * 2 1 4 4 O 1.20825 * 120.00074 * 359.97438 * 3 2 1 5 5 C 1.50699 * 120.00004 * 179.97438 * 3 2 1 6 6 C 1.52996 * 109.47229 * 179.97438 * 5 3 2 7 7 C 1.53008 * 109.47328 * 180.02562 * 6 5 3 8 8 C 1.52997 * 110.53033 * 292.10106 * 7 6 5 9 9 N 1.47304 * 110.60039 * 54.93074 * 7 6 5 10 10 C 1.34522 * 106.62145 * 118.52667 * 9 7 6 11 11 O 1.21538 * 123.77567 * 180.02562 * 10 9 7 12 12 N 1.33793 * 112.45692 * 0.02562 * 10 9 7 13 13 C 1.46501 * 124.18098 * 179.97438 * 12 10 9 14 14 C 1.53008 * 109.46701 * 84.56876 * 13 12 10 15 15 C 1.50700 * 115.56368 * 268.68121 * 14 13 12 16 16 H 1.08003 * 119.99872 * 142.73814 * 15 14 13 17 17 C 1.37877 * 120.00119 * 322.73984 * 15 14 13 18 18 N 1.31518 * 119.99844 * 342.56596 * 17 15 14 19 19 Si 1.86797 * 120.00025 * 162.56253 * 17 15 14 20 20 H 1.48496 * 109.47170 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.46728 * 120.00133 * 19 17 15 22 22 H 1.48499 * 109.47369 * 240.00139 * 19 17 15 23 23 C 1.52996 * 117.49752 * 54.37263 * 14 13 12 24 24 C 1.53005 * 60.03410 * 107.49685 * 23 14 13 25 25 C 1.34766 * 111.64525 * 0.22881 * 12 10 9 26 26 O 1.21229 * 127.15987 * 179.73216 * 25 12 10 27 27 H 1.09008 * 109.47292 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47415 * 300.00007 * 1 2 3 29 29 H 1.09000 * 109.47191 * 60.00767 * 1 2 3 30 30 H 1.08993 * 109.47279 * 59.99891 * 5 3 2 31 31 H 1.09004 * 109.47350 * 299.99493 * 5 3 2 32 32 H 1.09005 * 109.47727 * 59.99863 * 6 5 3 33 33 H 1.09004 * 109.46986 * 299.99664 * 6 5 3 34 34 H 1.08997 * 109.46980 * 182.12876 * 8 7 6 35 35 H 1.09004 * 109.47414 * 302.12842 * 8 7 6 36 36 H 1.08996 * 109.47108 * 62.13069 * 8 7 6 37 37 H 0.96998 * 126.68966 * 298.49889 * 9 7 6 38 38 H 1.08997 * 109.47155 * 324.57581 * 13 12 10 39 39 H 1.08995 * 109.47897 * 204.56873 * 13 12 10 40 40 H 0.96999 * 119.99876 * 185.02187 * 18 17 15 41 41 H 1.09003 * 117.50358 * 0.02562 * 23 14 13 42 42 H 1.09000 * 117.50381 * 215.00081 * 23 14 13 43 43 H 1.08997 * 117.49585 * 107.47296 * 24 23 14 44 44 H 1.08992 * 117.50029 * 252.47825 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.0001 2.7420 -0.0002 7 6 5.5281 2.8221 -0.0002 8 6 6.0921 2.3125 1.3275 9 7 6.0871 2.0575 -1.1284 10 6 6.7535 2.9376 -1.8971 11 8 7.3386 2.6352 -2.9185 12 7 6.7003 4.1832 -1.4115 13 6 7.3376 5.3409 -2.0437 14 6 6.4110 5.9078 -3.1213 15 6 6.6102 5.3525 -4.5080 16 1 5.7579 5.1822 -5.1491 17 6 7.8805 5.0619 -4.9584 18 7 8.9276 5.5704 -4.3462 19 14 8.1144 3.9457 -6.4379 20 1 6.7880 3.5083 -6.9425 21 1 8.8310 4.6856 -7.5076 22 1 8.9099 2.7566 -6.0401 23 6 4.9852 6.2746 -2.7052 24 6 6.0029 7.3783 -3.0007 25 6 5.9926 4.2403 -0.2660 26 8 5.7719 5.2220 0.4101 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 3.9564 0.7805 -0.8891 31 1 3.9557 0.7810 0.8909 32 1 3.6100 3.2368 0.8893 33 1 3.6108 3.2355 -0.8907 34 1 7.1775 2.4124 1.3234 35 1 5.6765 2.8982 2.1476 36 1 5.8242 1.2641 1.4576 37 1 5.9934 1.1050 -1.2860 38 1 8.2791 5.0338 -2.4990 39 1 7.5303 6.1056 -1.2913 40 1 9.8170 5.4259 -4.7055 41 1 4.7072 6.1125 -1.6638 42 1 4.1910 6.1140 -3.4343 43 1 5.8786 7.9433 -3.9245 44 1 6.3941 7.9419 -2.1538 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596282153.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:34 Heat of formation + Delta-G solvation = -98.159660 kcal Electronic energy + Delta-G solvation = -29131.998373 eV Core-core repulsion = 25051.795595 eV Total energy + Delta-G solvation = -4080.202778 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.156 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.08193 -40.65778 -38.00913 -37.32081 -36.72519 -36.01267 -34.42310 -32.34600 -32.10840 -30.17361 -28.08023 -27.10120 -25.71340 -25.30131 -23.32543 -21.79751 -21.16139 -20.47092 -20.21323 -18.86008 -17.95556 -17.45482 -16.95122 -16.79582 -16.50119 -15.83470 -15.62053 -15.23301 -14.88164 -14.72118 -14.38469 -14.09325 -13.74135 -13.60138 -13.49838 -13.24217 -12.94268 -12.67209 -12.57006 -12.51563 -12.11930 -11.88126 -11.69923 -11.30391 -11.26929 -11.06915 -10.87947 -10.73988 -10.67838 -10.39532 -10.34322 -10.08119 -9.87500 -9.55292 -9.17042 -9.00123 -8.77059 -8.59024 -8.03681 -6.04114 -3.99433 1.96143 2.06369 2.43380 2.83881 3.37940 3.46506 3.49619 3.51295 3.75634 4.13737 4.36539 4.49004 4.53217 4.63232 4.80774 4.81967 4.90759 4.93466 5.05915 5.11450 5.24771 5.41883 5.48831 5.58577 5.63336 5.73007 5.86093 5.96082 6.09696 6.12870 6.28821 6.37143 6.44895 6.71566 6.77819 6.99444 7.11639 7.15689 7.38358 7.44677 7.48663 7.80904 7.93726 7.99504 8.44450 8.81414 8.92023 9.60147 11.01718 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.014243 B = 0.004086 C = 0.003863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.459402 B = 6851.821344 C = 7246.005054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.362 6.362 3 C 0.461 3.539 4 O -0.501 6.501 5 C -0.112 4.112 6 C -0.102 4.102 7 C 0.120 3.880 8 C -0.147 4.147 9 N -0.737 5.737 10 C 0.698 3.302 11 O -0.507 6.507 12 N -0.552 5.552 13 C 0.141 3.859 14 C 0.040 3.960 15 C -0.484 4.484 16 H 0.058 0.942 17 C 0.088 3.912 18 N -0.880 5.880 19 Si 0.897 3.103 20 H -0.276 1.276 21 H -0.290 1.290 22 H -0.278 1.278 23 C -0.209 4.209 24 C -0.191 4.191 25 C 0.526 3.474 26 O -0.479 6.479 27 H 0.100 0.900 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.109 0.891 31 H 0.112 0.888 32 H 0.096 0.904 33 H 0.087 0.913 34 H 0.069 0.931 35 H 0.081 0.919 36 H 0.075 0.925 37 H 0.430 0.570 38 H 0.141 0.859 39 H 0.063 0.937 40 H 0.263 0.737 41 H 0.068 0.932 42 H 0.073 0.927 43 H 0.080 0.920 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.613 -12.480 12.848 20.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.279 6.279 3 C 0.304 3.696 4 O -0.388 6.388 5 C -0.150 4.150 6 C -0.141 4.141 7 C 0.029 3.971 8 C -0.206 4.206 9 N -0.404 5.404 10 C 0.399 3.601 11 O -0.376 6.376 12 N -0.295 5.295 13 C 0.022 3.978 14 C 0.039 3.961 15 C -0.521 4.521 16 H 0.076 0.924 17 C -0.115 4.115 18 N -0.517 5.517 19 Si 0.725 3.275 20 H -0.200 1.200 21 H -0.217 1.217 22 H -0.204 1.204 23 C -0.247 4.247 24 C -0.230 4.230 25 C 0.312 3.688 26 O -0.350 6.350 27 H 0.119 0.881 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.128 0.872 31 H 0.130 0.870 32 H 0.115 0.885 33 H 0.105 0.895 34 H 0.088 0.912 35 H 0.100 0.900 36 H 0.094 0.906 37 H 0.274 0.726 38 H 0.159 0.841 39 H 0.082 0.918 40 H 0.073 0.927 41 H 0.087 0.913 42 H 0.092 0.908 43 H 0.098 0.902 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.341 -11.739 12.586 19.582 hybrid contribution -0.302 -0.849 -0.865 1.249 sum -9.643 -12.588 11.720 19.718 Atomic orbital electron populations 1.23270 0.76240 1.03661 1.02696 1.86496 1.23553 1.33545 1.84257 1.23722 0.92127 0.81364 0.72434 1.90716 1.67184 1.36258 1.44616 1.21379 0.87734 0.99582 1.06274 1.21582 0.91476 0.94975 1.06019 1.21360 0.95007 0.90962 0.89753 1.22021 1.02222 1.02138 0.94170 1.45732 1.57811 1.10548 1.26285 1.15909 0.80049 0.80956 0.83203 1.91054 1.45081 1.79379 1.22131 1.46589 1.48855 1.10669 1.23424 1.21858 0.99361 0.83367 0.93172 1.19244 0.89632 0.92394 0.94879 1.20401 0.92682 1.41981 0.96986 0.92362 1.24774 0.95586 0.94245 0.96863 1.69753 0.98893 1.43102 1.39964 0.86471 0.78199 0.81323 0.81491 1.20028 1.21692 1.20407 1.22864 0.94689 1.07799 0.99306 1.23002 1.05357 0.93995 1.00613 1.20537 0.77560 0.89746 0.80941 1.90735 1.55918 1.36757 1.51622 0.88110 0.91865 0.91776 0.87248 0.86982 0.88548 0.89478 0.91216 0.89982 0.90640 0.72627 0.84127 0.91828 0.92720 0.91303 0.90809 0.90166 0.91558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.25 10.56 101.05 1.07 1.32 16 2 O -0.36 -3.40 10.56 -39.24 -0.41 -3.82 16 3 C 0.46 4.93 7.96 36.01 0.29 5.22 16 4 O -0.50 -7.05 15.73 -18.75 -0.29 -7.34 16 5 C -0.11 -0.92 5.40 -27.89 -0.15 -1.07 16 6 C -0.10 -1.16 3.85 -26.73 -0.10 -1.26 16 7 C 0.12 1.50 1.01 -132.09 -0.13 1.37 16 8 C -0.15 -1.32 8.73 37.16 0.32 -1.00 16 9 N -0.74 -9.84 5.38 -52.94 -0.28 -10.13 16 10 C 0.70 13.72 8.62 -88.02 -0.76 12.96 16 11 O -0.51 -12.14 17.54 5.33 0.09 -12.05 16 12 N -0.55 -11.25 2.41 -120.73 -0.29 -11.54 16 13 C 0.14 3.35 5.44 -4.04 -0.02 3.33 16 14 C 0.04 1.00 2.00 -155.62 -0.31 0.69 16 15 C -0.48 -13.44 9.00 -34.44 -0.31 -13.75 16 16 H 0.06 1.66 7.88 -52.48 -0.41 1.25 16 17 C 0.09 2.44 5.02 -17.82 -0.09 2.36 16 18 N -0.88 -24.54 11.07 55.43 0.61 -23.93 16 19 Si 0.90 22.44 29.58 -169.99 -5.03 17.41 16 20 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 22 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 23 C -0.21 -4.81 9.64 -26.73 -0.26 -5.07 16 24 C -0.19 -4.50 9.89 -26.69 -0.26 -4.76 16 25 C 0.53 9.29 6.13 -10.55 -0.06 9.22 16 26 O -0.48 -9.37 16.97 5.60 0.10 -9.27 16 27 H 0.10 0.43 8.14 -51.92 -0.42 0.01 16 28 H 0.06 0.44 8.13 -51.93 -0.42 0.01 16 29 H 0.06 0.49 8.13 -51.93 -0.42 0.06 16 30 H 0.11 0.79 7.00 -51.93 -0.36 0.42 16 31 H 0.11 0.59 6.80 -51.93 -0.35 0.23 16 32 H 0.10 1.08 8.10 -51.93 -0.42 0.66 16 33 H 0.09 1.23 8.08 -51.93 -0.42 0.81 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.44 6.87 -51.93 -0.36 0.08 16 37 H 0.43 4.30 8.09 -40.82 -0.33 3.97 16 38 H 0.14 3.72 5.17 -51.93 -0.27 3.46 16 39 H 0.06 1.46 7.63 -51.93 -0.40 1.07 16 40 H 0.26 7.03 8.32 -40.82 -0.34 6.69 16 41 H 0.07 1.54 6.59 -51.93 -0.34 1.20 16 42 H 0.07 1.68 8.14 -51.93 -0.42 1.26 16 43 H 0.08 1.89 8.14 -51.93 -0.42 1.47 16 44 H 0.07 1.48 8.03 -51.93 -0.42 1.06 16 LS Contribution 369.33 15.07 5.57 5.57 Total: -1.00 -34.26 369.33 -6.91 -41.16 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -6.17 Total: 4.39 kcal Atomic # 6 Polarization: 10.33 SS G_CDS: -0.79 Total: 9.55 kcal Atomic # 7 Polarization: -45.63 SS G_CDS: 0.04 Total: -45.60 kcal Atomic # 8 Polarization: -31.96 SS G_CDS: -0.52 Total: -32.48 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.03 Total: 17.41 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.26 -6.91 -41.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596282153.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.996 kcal (2) G-P(sol) polarization free energy of solvation -34.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds