Wall clock time and date at job start Fri Apr 10 2020 18:32:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34223 * 116.99982 * 2 1 4 4 O 1.20825 * 120.00074 * 359.97438 * 3 2 1 5 5 C 1.50699 * 120.00004 * 179.97438 * 3 2 1 6 6 C 1.52996 * 109.47229 * 179.97438 * 5 3 2 7 7 C 1.53008 * 109.47328 * 180.02562 * 6 5 3 8 8 C 1.52997 * 110.53033 * 292.10106 * 7 6 5 9 9 N 1.47304 * 110.60039 * 54.93074 * 7 6 5 10 10 C 1.34522 * 106.62145 * 118.52667 * 9 7 6 11 11 O 1.21538 * 123.77567 * 180.02562 * 10 9 7 12 12 N 1.33793 * 112.45692 * 0.02562 * 10 9 7 13 13 C 1.46501 * 124.18098 * 179.97438 * 12 10 9 14 14 C 1.53008 * 109.46701 * 84.56876 * 13 12 10 15 15 C 1.50700 * 115.56368 * 268.68121 * 14 13 12 16 16 H 1.08003 * 119.99872 * 142.73814 * 15 14 13 17 17 C 1.37877 * 120.00119 * 322.73984 * 15 14 13 18 18 N 1.31518 * 119.99844 * 342.56596 * 17 15 14 19 19 Si 1.86797 * 120.00025 * 162.56253 * 17 15 14 20 20 H 1.48496 * 109.47170 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.46728 * 120.00133 * 19 17 15 22 22 H 1.48499 * 109.47369 * 240.00139 * 19 17 15 23 23 C 1.52996 * 117.49752 * 54.37263 * 14 13 12 24 24 C 1.53005 * 60.03410 * 107.49685 * 23 14 13 25 25 C 1.34766 * 111.64525 * 0.22881 * 12 10 9 26 26 O 1.21229 * 127.15987 * 179.73216 * 25 12 10 27 27 H 1.09008 * 109.47292 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47415 * 300.00007 * 1 2 3 29 29 H 1.09000 * 109.47191 * 60.00767 * 1 2 3 30 30 H 1.08993 * 109.47279 * 59.99891 * 5 3 2 31 31 H 1.09004 * 109.47350 * 299.99493 * 5 3 2 32 32 H 1.09005 * 109.47727 * 59.99863 * 6 5 3 33 33 H 1.09004 * 109.46986 * 299.99664 * 6 5 3 34 34 H 1.08997 * 109.46980 * 182.12876 * 8 7 6 35 35 H 1.09004 * 109.47414 * 302.12842 * 8 7 6 36 36 H 1.08996 * 109.47108 * 62.13069 * 8 7 6 37 37 H 0.96998 * 126.68966 * 298.49889 * 9 7 6 38 38 H 1.08997 * 109.47155 * 324.57581 * 13 12 10 39 39 H 1.08995 * 109.47897 * 204.56873 * 13 12 10 40 40 H 0.96999 * 119.99876 * 185.02187 * 18 17 15 41 41 H 1.09003 * 117.50358 * 0.02562 * 23 14 13 42 42 H 1.09000 * 117.50381 * 215.00081 * 23 14 13 43 43 H 1.08997 * 117.49585 * 107.47296 * 24 23 14 44 44 H 1.08992 * 117.50029 * 252.47825 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.0001 2.7420 -0.0002 7 6 5.5281 2.8221 -0.0002 8 6 6.0921 2.3125 1.3275 9 7 6.0871 2.0575 -1.1284 10 6 6.7535 2.9376 -1.8971 11 8 7.3386 2.6352 -2.9185 12 7 6.7003 4.1832 -1.4115 13 6 7.3376 5.3409 -2.0437 14 6 6.4110 5.9078 -3.1213 15 6 6.6102 5.3525 -4.5080 16 1 5.7579 5.1822 -5.1491 17 6 7.8805 5.0619 -4.9584 18 7 8.9276 5.5704 -4.3462 19 14 8.1144 3.9457 -6.4379 20 1 6.7880 3.5083 -6.9425 21 1 8.8310 4.6856 -7.5076 22 1 8.9099 2.7566 -6.0401 23 6 4.9852 6.2746 -2.7052 24 6 6.0029 7.3783 -3.0007 25 6 5.9926 4.2403 -0.2660 26 8 5.7719 5.2220 0.4101 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 3.9564 0.7805 -0.8891 31 1 3.9557 0.7810 0.8909 32 1 3.6100 3.2368 0.8893 33 1 3.6108 3.2355 -0.8907 34 1 7.1775 2.4124 1.3234 35 1 5.6765 2.8982 2.1476 36 1 5.8242 1.2641 1.4576 37 1 5.9934 1.1050 -1.2860 38 1 8.2791 5.0338 -2.4990 39 1 7.5303 6.1056 -1.2913 40 1 9.8170 5.4259 -4.7055 41 1 4.7072 6.1125 -1.6638 42 1 4.1910 6.1140 -3.4343 43 1 5.8786 7.9433 -3.9245 44 1 6.3941 7.9419 -2.1538 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596282153.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:34 Heat of formation + Delta-G solvation = -120.979957 kcal Electronic energy + Delta-G solvation = -29132.987935 eV Core-core repulsion = 25051.795595 eV Total energy + Delta-G solvation = -4081.192340 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.46930 -41.47386 -39.52313 -38.85095 -37.83058 -37.35509 -35.90716 -34.22047 -33.48097 -31.08273 -28.79508 -28.70428 -27.50149 -26.49369 -24.63490 -23.23862 -22.85864 -21.69132 -21.33723 -20.68356 -18.99371 -18.73131 -18.28185 -17.70910 -17.58964 -17.41498 -16.99632 -16.59836 -16.51129 -16.21704 -15.81244 -15.53378 -15.08783 -15.02074 -14.80330 -14.36174 -14.07141 -13.74667 -13.67670 -13.35347 -13.30587 -13.27778 -12.92341 -12.82386 -12.69667 -12.61210 -12.37487 -12.20994 -12.10027 -11.88322 -11.77877 -11.62532 -11.56436 -11.07631 -10.95938 -10.73525 -10.50638 -10.28693 -10.06530 -8.15003 -6.14676 0.68066 1.17218 1.33711 1.39815 1.46131 1.49885 1.77458 2.21694 2.28390 2.42608 2.93395 3.03352 3.44235 3.59025 3.67014 3.75314 4.08516 4.13346 4.17859 4.25350 4.33115 4.34383 4.46475 4.49895 4.54699 4.64355 4.73726 4.75501 4.80817 4.82553 4.85755 4.90873 5.01960 5.10822 5.21225 5.23864 5.40748 5.47232 5.50978 5.86455 5.99114 6.28783 6.42631 6.50925 6.71754 6.77606 7.36301 7.46018 8.90152 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.014243 B = 0.004086 C = 0.003863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.459402 B = 6851.821344 C = 7246.005054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.360 6.360 3 C 0.461 3.539 4 O -0.544 6.544 5 C -0.105 4.105 6 C -0.097 4.097 7 C 0.137 3.863 8 C -0.144 4.144 9 N -0.705 5.705 10 C 0.692 3.308 11 O -0.559 6.559 12 N -0.565 5.565 13 C 0.152 3.848 14 C 0.018 3.982 15 C -0.501 4.501 16 H 0.041 0.959 17 C 0.058 3.942 18 N -0.895 5.895 19 Si 0.941 3.059 20 H -0.277 1.277 21 H -0.278 1.278 22 H -0.285 1.285 23 C -0.191 4.191 24 C -0.188 4.188 25 C 0.516 3.484 26 O -0.501 6.501 27 H 0.132 0.868 28 H 0.063 0.937 29 H 0.054 0.946 30 H 0.125 0.875 31 H 0.157 0.843 32 H 0.101 0.899 33 H 0.053 0.947 34 H 0.062 0.938 35 H 0.092 0.908 36 H 0.121 0.879 37 H 0.450 0.550 38 H 0.113 0.887 39 H 0.062 0.938 40 H 0.264 0.736 41 H 0.075 0.925 42 H 0.072 0.928 43 H 0.076 0.924 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.437 -14.857 14.576 23.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.277 6.277 3 C 0.306 3.694 4 O -0.434 6.434 5 C -0.142 4.142 6 C -0.135 4.135 7 C 0.046 3.954 8 C -0.202 4.202 9 N -0.374 5.374 10 C 0.393 3.607 11 O -0.432 6.432 12 N -0.309 5.309 13 C 0.031 3.969 14 C 0.017 3.983 15 C -0.538 4.538 16 H 0.060 0.940 17 C -0.144 4.144 18 N -0.533 5.533 19 Si 0.768 3.232 20 H -0.202 1.202 21 H -0.204 1.204 22 H -0.211 1.211 23 C -0.228 4.228 24 C -0.226 4.226 25 C 0.304 3.696 26 O -0.374 6.374 27 H 0.150 0.850 28 H 0.082 0.918 29 H 0.073 0.927 30 H 0.143 0.857 31 H 0.174 0.826 32 H 0.120 0.880 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.111 0.889 36 H 0.139 0.861 37 H 0.298 0.702 38 H 0.131 0.869 39 H 0.081 0.919 40 H 0.074 0.926 41 H 0.093 0.907 42 H 0.091 0.909 43 H 0.094 0.906 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -10.203 -14.167 14.357 22.604 hybrid contribution -0.124 -0.097 -1.347 1.357 sum -10.328 -14.264 13.009 21.894 Atomic orbital electron populations 1.23520 0.75105 1.05634 1.02310 1.86491 1.24716 1.32711 1.83734 1.24159 0.92983 0.81074 0.71172 1.90712 1.68253 1.37630 1.46763 1.21437 0.86239 0.97417 1.09113 1.21499 0.89935 0.97354 1.04762 1.21461 0.95790 0.87076 0.91028 1.22132 1.01684 1.04917 0.91463 1.45532 1.55763 1.10813 1.25258 1.16122 0.80166 0.81344 0.83093 1.91012 1.47552 1.80128 1.24524 1.46573 1.49512 1.10348 1.24445 1.21360 0.98287 0.84429 0.92788 1.19297 0.91202 0.93384 0.94429 1.20502 0.92314 1.42854 0.98107 0.94034 1.25237 0.95449 0.94892 0.98821 1.69834 0.99027 1.43611 1.40784 0.85781 0.77839 0.79818 0.79728 1.20227 1.20381 1.21104 1.22762 0.93782 1.06790 0.99471 1.22999 1.05230 0.93517 1.00899 1.21430 0.76588 0.91920 0.79620 1.90713 1.56465 1.38293 1.51935 0.84983 0.91828 0.92689 0.85705 0.82570 0.88042 0.92780 0.91871 0.88876 0.86080 0.70232 0.86909 0.91925 0.92628 0.90674 0.90901 0.90551 0.90366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.56 113.37 1.20 1.53 16 2 O -0.36 -5.77 10.56 -51.35 -0.54 -6.31 16 3 C 0.46 8.74 7.96 71.24 0.57 9.31 16 4 O -0.54 -14.75 15.73 21.97 0.35 -14.40 16 5 C -0.11 -1.31 5.40 29.85 0.16 -1.15 16 6 C -0.10 -1.96 3.85 30.60 0.12 -1.84 16 7 C 0.14 3.05 1.01 2.99 0.00 3.06 16 8 C -0.14 -1.95 8.73 71.98 0.63 -1.33 16 9 N -0.71 -17.25 5.38 -439.82 -2.36 -19.61 16 10 C 0.69 27.04 8.62 179.44 1.55 28.59 16 11 O -0.56 -27.15 17.54 -3.84 -0.07 -27.22 16 12 N -0.57 -23.19 2.41 -773.12 -1.86 -25.05 16 13 C 0.15 7.39 5.44 86.38 0.47 7.86 16 14 C 0.02 0.93 2.00 -52.90 -0.11 0.82 16 15 C -0.50 -28.50 9.00 25.60 0.23 -28.27 16 16 H 0.04 2.43 7.88 -2.91 -0.02 2.41 16 17 C 0.06 3.24 5.02 84.65 0.42 3.67 16 18 N -0.89 -50.95 11.07 21.45 0.24 -50.72 16 19 Si 0.94 46.65 29.58 68.60 2.03 48.68 16 20 H -0.28 -13.69 7.11 99.48 0.71 -12.99 16 21 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 22 H -0.28 -14.36 7.11 99.48 0.71 -13.65 16 23 C -0.19 -8.84 9.64 30.59 0.30 -8.54 16 24 C -0.19 -8.92 9.89 30.62 0.30 -8.62 16 25 C 0.52 17.82 6.13 87.94 0.54 18.36 16 26 O -0.50 -19.36 16.97 -2.87 -0.05 -19.41 16 27 H 0.13 0.74 8.14 -2.38 -0.02 0.72 16 28 H 0.06 0.78 8.13 -2.39 -0.02 0.76 16 29 H 0.05 0.78 8.13 -2.39 -0.02 0.76 16 30 H 0.13 1.24 7.00 -2.39 -0.02 1.23 16 31 H 0.16 0.63 6.80 -2.38 -0.02 0.61 16 32 H 0.10 2.01 8.10 -2.38 -0.02 2.00 16 33 H 0.05 1.48 8.08 -2.38 -0.02 1.46 16 34 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.09 1.16 8.14 -2.38 -0.02 1.14 16 36 H 0.12 0.60 6.87 -2.39 -0.02 0.58 16 37 H 0.45 7.43 8.09 -92.71 -0.75 6.68 16 38 H 0.11 6.18 5.17 -2.39 -0.01 6.17 16 39 H 0.06 2.96 7.63 -2.39 -0.02 2.94 16 40 H 0.26 14.38 8.32 -92.71 -0.77 13.60 16 41 H 0.07 3.36 6.59 -2.39 -0.02 3.35 16 42 H 0.07 3.36 8.14 -2.39 -0.02 3.34 16 43 H 0.08 3.64 8.14 -2.39 -0.02 3.62 16 44 H 0.08 3.48 8.03 -2.39 -0.02 3.46 16 Total: -1.00 -78.19 369.33 4.39 -73.80 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: 0.29 Total: 16.79 kcal Atomic # 6 Polarization: 17.08 SS G_CDS: 6.38 Total: 23.45 kcal Atomic # 7 Polarization: -91.39 SS G_CDS: -3.99 Total: -95.38 kcal Atomic # 8 Polarization: -67.03 SS G_CDS: -0.31 Total: -67.34 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 2.03 Total: 48.68 kcal Total: -78.19 4.39 -73.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596282153.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.179 kcal (2) G-P(sol) polarization free energy of solvation -78.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds