Wall clock time and date at job start Fri Apr 10 2020 18:31:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.36021 * 116.99537 * 2 1 4 4 C 1.35496 * 120.48845 * 0.02940 * 3 2 1 5 5 O 1.33827 * 121.01652 * 179.97438 * 4 3 2 6 6 C 1.34296 * 122.04360 * 359.97438 * 5 4 3 7 7 C 1.48052 * 119.57056 * 180.02562 * 6 5 4 8 8 O 1.21515 * 119.99281 * 179.97438 * 7 6 5 9 9 N 1.34767 * 120.00215 * 0.02562 * 7 6 5 10 10 C 1.46502 * 120.00117 * 179.97438 * 9 7 6 11 11 H 1.09005 * 109.47165 * 325.00672 * 10 9 7 12 12 C 1.53005 * 109.46887 * 85.00105 * 10 9 7 13 13 C 1.52993 * 109.47519 * 205.00224 * 10 9 7 14 14 C 1.52992 * 109.47269 * 65.00121 * 13 10 9 15 15 H 1.09000 * 109.47615 * 305.00098 * 14 13 10 16 16 C 1.53007 * 109.47288 * 184.99920 * 14 13 10 17 17 N 1.46497 * 109.47309 * 65.00149 * 14 13 10 18 18 C 1.36932 * 120.00464 * 205.00195 * 17 14 13 19 19 H 1.08003 * 119.99810 * 359.97438 * 18 17 14 20 20 C 1.38816 * 120.00640 * 179.97438 * 18 17 14 21 21 N 1.31616 * 120.00370 * 179.97438 * 20 18 17 22 22 Si 1.86809 * 119.99511 * 0.02562 * 20 18 17 23 23 H 1.48495 * 109.47054 * 89.99803 * 22 20 18 24 24 H 1.48499 * 109.46738 * 209.99834 * 22 20 18 25 25 H 1.48496 * 109.46832 * 329.99853 * 22 20 18 26 26 C 1.35793 * 120.85284 * 0.02562 * 6 5 4 27 27 C 1.42009 * 120.48195 * 179.97438 * 3 2 1 28 28 O 1.22129 * 120.92111 * 0.02562 * 27 3 2 29 29 H 1.09001 * 109.47576 * 59.99655 * 1 2 3 30 30 H 1.09007 * 109.46739 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47254 * 299.99080 * 1 2 3 32 32 H 1.08001 * 119.48875 * 359.94739 * 4 3 2 33 33 H 0.97005 * 120.00164 * 0.02562 * 9 7 6 34 34 H 1.08997 * 109.46941 * 60.00027 * 12 10 9 35 35 H 1.08992 * 109.47412 * 180.02562 * 12 10 9 36 36 H 1.09006 * 109.46830 * 300.00436 * 12 10 9 37 37 H 1.09007 * 109.47127 * 185.00202 * 13 10 9 38 38 H 1.09007 * 109.47228 * 305.00363 * 13 10 9 39 39 H 1.09000 * 109.46936 * 179.97438 * 16 14 13 40 40 H 1.08999 * 109.47168 * 300.00093 * 16 14 13 41 41 H 1.09000 * 109.46923 * 60.00253 * 16 14 13 42 42 H 0.97007 * 119.99926 * 25.00122 * 17 14 13 43 43 H 0.96998 * 119.99556 * 180.02562 * 21 20 18 44 44 H 1.07995 * 120.55502 * 180.27239 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2120 0.0000 4 6 1.3180 2.3546 0.0006 5 8 1.9145 3.5526 0.0011 6 6 3.2511 3.6831 0.0016 7 6 3.8531 5.0356 0.0027 8 8 5.0616 5.1626 0.0036 9 7 3.0609 6.1259 0.0038 10 6 3.6567 7.4643 0.0055 11 1 4.5735 7.4532 0.5951 12 6 3.9793 7.8807 -1.4310 13 6 2.6697 8.4612 0.6161 14 6 2.4432 8.1172 2.0895 15 1 2.1215 7.0793 2.1751 16 6 1.3640 9.0350 2.6675 17 7 3.6921 8.3041 2.8322 18 6 3.9090 7.6103 3.9927 19 1 3.1592 6.9256 4.3607 20 6 5.0926 7.7870 4.6962 21 7 5.3009 7.1205 5.8118 22 14 6.3892 8.9718 4.0600 23 1 6.1431 10.3238 4.6228 24 1 7.7355 8.5009 4.4736 25 1 6.3197 9.0324 2.5779 26 6 4.0575 2.5905 0.0010 27 6 3.4638 1.2984 0.0005 28 8 4.1540 0.2908 0.0006 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3634 0.5137 0.8901 32 1 0.2395 2.2975 0.0002 33 1 2.0962 6.0245 0.0042 34 1 3.0626 7.8918 -2.0206 35 1 4.4229 8.8763 -1.4298 36 1 4.6824 7.1704 -1.8660 37 1 3.0759 9.4696 0.5366 38 1 1.7217 8.4081 0.0807 39 1 1.2024 8.7896 3.7171 40 1 1.6858 10.0729 2.5820 41 1 0.4348 8.8959 2.1150 42 1 4.3654 8.9193 2.5019 43 1 6.1278 7.2443 6.3035 44 1 5.1317 2.7010 0.0058 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134988444.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:36 Heat of formation + Delta-G solvation = -111.208290 kcal Electronic energy + Delta-G solvation = -28000.033960 eV Core-core repulsion = 23919.265351 eV Total energy + Delta-G solvation = -4080.768609 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.31471 -41.09734 -40.25521 -39.28602 -38.52842 -36.29358 -34.14411 -33.87970 -32.95360 -31.83453 -30.90782 -28.69960 -27.59932 -26.47852 -25.31590 -25.04449 -23.07517 -22.01781 -21.34678 -20.33147 -19.92610 -19.67393 -19.01231 -17.98986 -17.48109 -17.18056 -16.70563 -16.57012 -16.32453 -16.01965 -15.95879 -15.74312 -15.42949 -15.26344 -15.24570 -15.07751 -14.60369 -14.31290 -14.01398 -13.77462 -13.42653 -13.27094 -13.01553 -12.78594 -12.62477 -12.46198 -12.44910 -12.38360 -12.00099 -11.85629 -11.68625 -11.62253 -11.43669 -11.11113 -10.96674 -10.94088 -10.20013 -9.43894 -9.25072 -7.99701 -5.29852 -0.86606 -0.19580 0.84200 1.35715 1.40487 1.46553 1.50653 1.82145 2.02395 2.20725 2.50152 3.18282 3.21184 3.33177 3.34279 3.68023 3.81021 3.83618 4.07345 4.19056 4.24475 4.31790 4.35636 4.40757 4.52681 4.67580 4.74582 4.77771 4.79911 4.85145 4.90976 5.02097 5.12609 5.18276 5.33204 5.35928 5.47990 5.63328 5.66094 5.82577 5.95998 6.25182 6.30245 6.44012 6.90766 7.13864 7.92918 8.07668 9.22448 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.012711 B = 0.003555 C = 0.003355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2202.372389 B = 7873.348095 C = 8344.315066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.000 4.000 2 O -0.314 6.314 3 C -0.075 4.075 4 C 0.037 3.963 5 O -0.175 6.175 6 C 0.114 3.886 7 C 0.572 3.428 8 O -0.539 6.539 9 N -0.678 5.678 10 C 0.136 3.864 11 H 0.058 0.942 12 C -0.154 4.154 13 C -0.121 4.121 14 C 0.164 3.836 15 H 0.045 0.955 16 C -0.158 4.158 17 N -0.750 5.750 18 C -0.213 4.213 19 H 0.055 0.945 20 C -0.069 4.069 21 N -0.988 5.988 22 Si 0.947 3.053 23 H -0.277 1.277 24 H -0.307 1.307 25 H -0.250 1.250 26 C -0.247 4.247 27 C 0.396 3.604 28 O -0.518 6.518 29 H 0.085 0.915 30 H 0.118 0.882 31 H 0.078 0.922 32 H 0.261 0.739 33 H 0.422 0.578 34 H 0.087 0.913 35 H 0.078 0.922 36 H 0.041 0.959 37 H 0.091 0.909 38 H 0.117 0.883 39 H 0.023 0.977 40 H 0.050 0.950 41 H 0.081 0.919 42 H 0.363 0.637 43 H 0.253 0.747 44 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.042 -2.606 -20.099 27.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 O -0.229 6.229 3 C -0.122 4.122 4 C -0.029 4.029 5 O -0.076 6.076 6 C 0.062 3.938 7 C 0.355 3.645 8 O -0.417 6.417 9 N -0.329 5.329 10 C 0.032 3.968 11 H 0.076 0.924 12 C -0.212 4.212 13 C -0.159 4.159 14 C 0.056 3.944 15 H 0.064 0.936 16 C -0.217 4.217 17 N -0.393 5.393 18 C -0.344 4.344 19 H 0.073 0.927 20 C -0.259 4.259 21 N -0.640 5.640 22 Si 0.775 3.225 23 H -0.203 1.203 24 H -0.234 1.234 25 H -0.175 1.175 26 C -0.269 4.269 27 C 0.288 3.712 28 O -0.406 6.406 29 H 0.104 0.896 30 H 0.137 0.863 31 H 0.097 0.903 32 H 0.276 0.724 33 H 0.261 0.739 34 H 0.105 0.895 35 H 0.097 0.903 36 H 0.060 0.940 37 H 0.109 0.891 38 H 0.135 0.865 39 H 0.042 0.958 40 H 0.069 0.931 41 H 0.099 0.901 42 H 0.196 0.804 43 H 0.062 0.938 44 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -16.997 -3.084 -19.957 26.395 hybrid contribution 1.075 0.004 0.677 1.271 sum -15.921 -3.080 -19.280 25.193 Atomic orbital electron populations 1.23651 0.75466 1.06771 1.03492 1.86260 1.24014 1.23520 1.89072 1.20700 0.93968 0.87654 1.09872 1.24808 0.99723 0.79187 0.99188 1.82945 1.18460 1.31815 1.74390 1.22128 0.81059 0.95076 0.95582 1.17486 0.86248 0.82898 0.77863 1.90892 1.14776 1.85161 1.50870 1.45829 1.10890 1.05015 1.71164 1.21179 0.97473 0.80371 0.97728 0.92420 1.22125 1.02797 1.01908 0.94412 1.22176 1.00673 0.98864 0.94226 1.20565 0.85525 0.97616 0.90664 0.93650 1.22288 0.99310 1.00039 1.00098 1.42853 1.18993 1.51447 1.26055 1.18963 1.00573 1.16659 0.98219 0.92722 1.25432 1.00529 1.02312 0.97666 1.69878 1.27076 1.47877 1.19177 0.85521 0.78563 0.79148 0.79259 1.20285 1.23443 1.17484 1.23050 1.03549 0.91591 1.08696 1.17523 0.88159 0.89221 0.76323 1.90806 1.66540 1.39237 1.44007 0.89628 0.86346 0.90316 0.72357 0.73941 0.89461 0.90325 0.93987 0.89068 0.86486 0.95761 0.93050 0.90050 0.80441 0.93798 0.82149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.00 9.82 113.37 1.11 1.11 16 2 O -0.31 -6.77 10.35 -79.22 -0.82 -7.59 16 3 C -0.07 -1.68 6.72 22.57 0.15 -1.53 16 4 C 0.04 0.48 10.43 67.19 0.70 1.18 16 5 O -0.18 -2.90 9.06 2.09 0.02 -2.88 16 6 C 0.11 2.86 6.90 24.31 0.17 3.02 16 7 C 0.57 16.70 7.76 86.85 0.67 17.38 16 8 O -0.54 -20.70 15.92 -3.76 -0.06 -20.76 16 9 N -0.68 -15.22 4.44 -445.23 -1.98 -17.20 16 10 C 0.14 3.31 2.52 44.99 0.11 3.42 16 11 H 0.06 2.01 7.05 -2.38 -0.02 1.99 16 12 C -0.15 -2.85 9.48 71.98 0.68 -2.17 16 13 C -0.12 -2.45 4.29 30.59 0.13 -2.32 16 14 C 0.16 5.00 2.84 44.99 0.13 5.12 16 15 H 0.05 1.47 7.56 -2.39 -0.02 1.45 16 16 C -0.16 -4.33 9.49 71.98 0.68 -3.64 16 17 N -0.75 -32.14 4.30 -322.95 -1.39 -33.53 16 18 C -0.21 -11.80 10.41 84.04 0.87 -10.92 16 19 H 0.05 3.34 8.06 -2.91 -0.02 3.32 16 20 C -0.07 -4.08 5.50 84.86 0.47 -3.62 16 21 N -0.99 -64.80 13.97 21.65 0.30 -64.50 16 22 Si 0.95 46.52 27.74 68.60 1.90 48.42 16 23 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 24 H -0.31 -15.79 7.11 99.48 0.71 -15.08 16 25 H -0.25 -11.05 6.52 99.48 0.65 -10.40 16 26 C -0.25 -7.40 9.56 22.69 0.22 -7.19 16 27 C 0.40 12.52 6.82 24.19 0.16 12.68 16 28 O -0.52 -20.73 17.74 8.83 0.16 -20.57 16 29 H 0.09 0.18 7.67 -2.39 -0.02 0.16 16 30 H 0.12 0.64 8.14 -2.38 -0.02 0.62 16 31 H 0.08 0.31 7.67 -2.39 -0.02 0.29 16 32 H 0.26 0.37 6.22 -2.91 -0.02 0.36 16 33 H 0.42 6.30 8.00 -92.70 -0.74 5.56 16 34 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.04 0.94 8.14 -2.38 -0.02 0.92 16 37 H 0.09 1.73 8.14 -2.38 -0.02 1.71 16 38 H 0.12 1.37 8.14 -2.38 -0.02 1.35 16 39 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.08 1.55 8.14 -2.39 -0.02 1.54 16 42 H 0.36 15.21 5.66 -92.70 -0.52 14.68 16 43 H 0.25 16.03 8.31 -92.71 -0.77 15.26 16 44 H 0.16 5.29 7.56 -2.91 -0.02 5.27 16 Total: -1.00 -89.08 373.82 4.12 -84.96 By element: Atomic # 1 Polarization: 21.40 SS G_CDS: -0.28 Total: 21.12 kcal Atomic # 6 Polarization: 6.27 SS G_CDS: 6.27 Total: 12.54 kcal Atomic # 7 Polarization: -112.17 SS G_CDS: -3.06 Total: -115.23 kcal Atomic # 8 Polarization: -51.10 SS G_CDS: -0.70 Total: -51.81 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 1.90 Total: 48.42 kcal Total: -89.08 4.12 -84.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134988444.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.249 kcal (2) G-P(sol) polarization free energy of solvation -89.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds