Wall clock time and date at job start Fri Apr 10 2020 18:31:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.36019 * 117.00373 * 2 1 4 4 C 1.35498 * 120.48202 * 0.02636 * 3 2 1 5 5 O 1.33826 * 121.01768 * 179.97438 * 4 3 2 6 6 C 1.34295 * 122.04411 * 0.02562 * 5 4 3 7 7 C 1.48043 * 119.57495 * 179.97438 * 6 5 4 8 8 O 1.21524 * 119.99690 * 174.81696 * 7 6 5 9 9 N 1.34766 * 120.00149 * 354.81300 * 7 6 5 10 10 C 1.46499 * 120.00260 * 185.34461 * 9 7 6 11 11 H 1.09006 * 109.47027 * 326.93151 * 10 9 7 12 12 C 1.52996 * 109.47268 * 86.93130 * 10 9 7 13 13 C 1.52997 * 109.47604 * 206.93440 * 10 9 7 14 14 C 1.53007 * 109.47017 * 65.25919 * 13 10 9 15 15 H 1.08994 * 109.46981 * 305.87446 * 14 13 10 16 16 C 1.52996 * 109.46973 * 65.87899 * 14 13 10 17 17 N 1.46501 * 109.47203 * 185.87736 * 14 13 10 18 18 C 1.36934 * 120.00272 * 157.43558 * 17 14 13 19 19 H 1.07995 * 119.99900 * 4.92052 * 18 17 14 20 20 C 1.38809 * 119.99979 * 184.91856 * 18 17 14 21 21 N 1.31623 * 119.99807 * 184.33414 * 20 18 17 22 22 Si 1.86795 * 120.00335 * 4.33744 * 20 18 17 23 23 H 1.48502 * 109.47210 * 93.38800 * 22 20 18 24 24 H 1.48494 * 109.47479 * 213.38929 * 22 20 18 25 25 H 1.48495 * 109.47138 * 333.38960 * 22 20 18 26 26 C 1.35801 * 120.84701 * 359.97438 * 6 5 4 27 27 C 1.42006 * 120.48757 * 180.02562 * 3 2 1 28 28 O 1.22125 * 120.91738 * 359.97438 * 27 3 2 29 29 H 1.09003 * 109.47057 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46816 * 299.99479 * 1 2 3 31 31 H 1.08996 * 109.47074 * 59.99930 * 1 2 3 32 32 H 1.08004 * 119.49325 * 359.97438 * 4 3 2 33 33 H 0.97002 * 120.00104 * 5.34165 * 9 7 6 34 34 H 1.08999 * 109.47479 * 300.00143 * 12 10 9 35 35 H 1.08998 * 109.47445 * 60.00566 * 12 10 9 36 36 H 1.09007 * 109.47167 * 180.02562 * 12 10 9 37 37 H 1.08992 * 109.47778 * 185.26084 * 13 10 9 38 38 H 1.09007 * 109.47144 * 305.26528 * 13 10 9 39 39 H 1.09003 * 109.46942 * 299.99991 * 16 14 13 40 40 H 1.08995 * 109.47352 * 59.99488 * 16 14 13 41 41 H 1.09004 * 109.47343 * 179.97438 * 16 14 13 42 42 H 0.97004 * 119.99811 * 337.43692 * 17 14 13 43 43 H 0.96994 * 119.99837 * 180.02562 * 21 20 18 44 44 H 1.08008 * 120.55264 * 179.97438 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0465 1.2119 0.0000 4 6 1.3182 2.3545 0.0005 5 8 1.9147 3.5525 0.0011 6 6 3.2513 3.6830 0.0006 7 6 3.8534 5.0354 0.0006 8 8 5.0581 5.1641 0.0952 9 7 3.0656 6.1238 -0.1044 10 6 3.6667 7.4546 -0.2223 11 1 4.5974 7.4844 0.3443 12 6 3.9559 7.7550 -1.6943 13 6 2.6989 8.5023 0.3314 14 6 2.5119 8.2804 1.8337 15 1 2.2054 7.2501 2.0134 16 6 3.8318 8.5536 2.5577 17 7 1.4811 9.1915 2.3373 18 6 0.8110 8.8949 3.4941 19 1 1.0962 8.0318 4.0772 20 6 -0.2347 9.7037 3.9173 21 7 -0.8228 9.4690 5.0712 22 14 -0.8075 11.1251 2.8492 23 1 -1.9287 10.6750 1.9857 24 1 -1.2664 12.2411 3.7146 25 1 0.3173 11.5892 1.9979 26 6 4.0576 2.5902 0.0000 27 6 3.4640 1.2982 -0.0005 28 8 4.1539 0.2905 -0.0006 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 0.2397 2.2976 0.0005 33 1 2.1005 6.0260 -0.1019 34 1 4.6455 7.0086 -2.0888 35 1 3.0253 7.7253 -2.2609 36 1 4.4036 8.7450 -1.7820 37 1 3.1048 9.4990 0.1591 38 1 1.7365 8.4099 -0.1720 39 1 4.5988 7.8758 2.1829 40 1 4.1383 9.5840 2.3779 41 1 3.6985 8.3960 3.6280 42 1 1.2732 10.0048 1.8513 43 1 -1.5538 10.0339 5.3667 44 1 5.1320 2.7007 -0.0008 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134988446.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:40 Heat of formation + Delta-G solvation = -83.699240 kcal Electronic energy + Delta-G solvation = -27530.719862 eV Core-core repulsion = 23451.144135 eV Total energy + Delta-G solvation = -4079.575727 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.156 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.46249 -40.20268 -39.43289 -38.41803 -37.33184 -35.01240 -32.92423 -32.56099 -31.81317 -30.84619 -29.16466 -28.23939 -26.52848 -25.60702 -24.26990 -23.67476 -22.02108 -20.99328 -19.94584 -19.46982 -19.11871 -18.30232 -17.56921 -17.17730 -16.56117 -16.23275 -15.92792 -15.47333 -15.22675 -15.11856 -14.75218 -14.67483 -14.40705 -14.27697 -14.21326 -13.75199 -13.36838 -13.03743 -12.79635 -12.67613 -12.32260 -12.09859 -11.96737 -11.90459 -11.86403 -11.43992 -11.05232 -10.81980 -10.66803 -10.59499 -10.30760 -10.14616 -10.08945 -10.04015 -9.65633 -9.31011 -8.98949 -8.63608 -7.32531 -5.82943 -3.18844 0.06381 0.60247 1.71361 2.41343 2.60787 2.74554 3.10623 3.30452 3.33575 3.40302 3.85925 4.02753 4.13898 4.52580 4.56355 4.64188 4.68061 4.78155 4.91773 4.98065 5.05639 5.11329 5.14332 5.39808 5.43376 5.53695 5.57819 5.61441 5.72082 5.78555 5.98509 6.03346 6.10856 6.21115 6.39902 6.43639 6.50992 6.59320 6.76014 6.96943 7.14897 7.31527 7.70217 7.94899 8.36355 9.15585 9.87725 10.07842 11.35364 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.012514 B = 0.003147 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2236.906198 B = 8894.588817 C =10285.246760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.283 6.283 3 C -0.053 4.053 4 C 0.000 4.000 5 O -0.193 6.193 6 C 0.094 3.906 7 C 0.577 3.423 8 O -0.502 6.502 9 N -0.697 5.697 10 C 0.138 3.862 11 H 0.101 0.899 12 C -0.163 4.163 13 C -0.138 4.138 14 C 0.177 3.823 15 H 0.053 0.947 16 C -0.168 4.168 17 N -0.751 5.751 18 C -0.243 4.243 19 H 0.088 0.912 20 C 0.004 3.996 21 N -0.933 5.933 22 Si 0.888 3.112 23 H -0.286 1.286 24 H -0.292 1.292 25 H -0.278 1.278 26 C -0.229 4.229 27 C 0.408 3.592 28 O -0.459 6.459 29 H 0.108 0.892 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.205 0.795 33 H 0.411 0.589 34 H 0.058 0.942 35 H 0.059 0.941 36 H 0.070 0.930 37 H 0.080 0.920 38 H 0.072 0.928 39 H 0.041 0.959 40 H 0.046 0.954 41 H 0.056 0.944 42 H 0.362 0.638 43 H 0.259 0.741 44 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.624 -11.936 -15.906 20.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.196 6.196 3 C -0.100 4.100 4 C -0.066 4.066 5 O -0.095 6.095 6 C 0.042 3.958 7 C 0.360 3.640 8 O -0.378 6.378 9 N -0.348 5.348 10 C 0.034 3.966 11 H 0.119 0.881 12 C -0.221 4.221 13 C -0.176 4.176 14 C 0.067 3.933 15 H 0.071 0.929 16 C -0.228 4.228 17 N -0.394 5.394 18 C -0.373 4.373 19 H 0.106 0.894 20 C -0.192 4.192 21 N -0.581 5.581 22 Si 0.719 3.281 23 H -0.212 1.212 24 H -0.218 1.218 25 H -0.205 1.205 26 C -0.251 4.251 27 C 0.295 3.705 28 O -0.342 6.342 29 H 0.126 0.874 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.221 0.779 33 H 0.248 0.752 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.089 0.911 37 H 0.098 0.902 38 H 0.090 0.910 39 H 0.060 0.940 40 H 0.065 0.935 41 H 0.075 0.925 42 H 0.195 0.805 43 H 0.069 0.931 44 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 4.672 -12.418 -15.636 20.507 hybrid contribution -1.370 1.017 -0.508 1.780 sum 3.302 -11.401 -16.145 20.038 Atomic orbital electron populations 1.23257 0.78267 1.05158 1.01541 1.86284 1.21053 1.23604 1.88691 1.21019 0.95337 0.86085 1.07592 1.23968 0.98314 0.80979 1.03358 1.82929 1.20039 1.30952 1.75579 1.22509 0.80321 0.96283 0.96690 1.17332 0.86480 0.82082 0.78095 1.90887 1.13030 1.84591 1.49330 1.46079 1.10839 1.06189 1.71658 1.21258 0.98336 0.80180 0.96789 0.88074 1.22196 1.02008 1.02342 0.95592 1.22253 0.99078 0.98324 0.97970 1.20177 0.88987 0.94674 0.89423 0.92906 1.22463 0.98112 1.00262 1.01953 1.42858 1.43825 1.24009 1.28722 1.19042 1.09747 1.10569 0.97912 0.89385 1.24705 0.98487 0.98917 0.97044 1.69712 1.26745 1.41204 1.20415 0.86502 0.78568 0.82979 0.80090 1.21231 1.21845 1.20478 1.23157 1.03696 0.90933 1.07271 1.17087 0.86268 0.89817 0.77341 1.90848 1.65113 1.37947 1.40283 0.87369 0.92049 0.92269 0.77890 0.75232 0.92286 0.92227 0.91091 0.90195 0.90984 0.93985 0.93487 0.92459 0.80502 0.93059 0.80400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.07 9.82 101.05 0.99 1.06 16 2 O -0.28 -2.98 10.35 -35.04 -0.36 -3.34 16 3 C -0.05 -0.56 6.72 -39.12 -0.26 -0.83 16 4 C 0.00 0.00 10.43 29.75 0.31 0.31 16 5 O -0.19 -1.74 9.07 6.99 0.06 -1.68 16 6 C 0.09 0.99 6.90 -36.43 -0.25 0.74 16 7 C 0.58 6.79 7.77 -12.24 -0.10 6.70 16 8 O -0.50 -7.20 15.87 5.34 0.08 -7.11 16 9 N -0.70 -7.35 4.42 -54.69 -0.24 -7.60 16 10 C 0.14 1.51 2.52 -67.93 -0.17 1.34 16 11 H 0.10 1.25 5.67 -51.93 -0.29 0.95 16 12 C -0.16 -1.47 9.50 37.16 0.35 -1.12 16 13 C -0.14 -1.74 4.40 -26.73 -0.12 -1.86 16 14 C 0.18 3.03 2.91 -67.93 -0.20 2.83 16 15 H 0.05 0.95 7.56 -51.93 -0.39 0.55 16 16 C -0.17 -2.82 9.24 37.16 0.34 -2.48 16 17 N -0.75 -16.44 4.93 -53.43 -0.26 -16.71 16 18 C -0.24 -6.53 10.39 -15.06 -0.16 -6.68 16 19 H 0.09 2.57 8.06 -52.49 -0.42 2.15 16 20 C 0.00 0.12 5.50 -17.43 -0.10 0.03 16 21 N -0.93 -28.50 13.97 55.49 0.78 -27.72 16 22 Si 0.89 21.21 27.97 -169.99 -4.76 16.45 16 23 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 24 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 25 H -0.28 -6.16 6.20 56.52 0.35 -5.81 16 26 C -0.23 -2.65 9.56 -38.94 -0.37 -3.02 16 27 C 0.41 5.35 6.82 -36.62 -0.25 5.10 16 28 O -0.46 -7.57 17.74 -10.44 -0.19 -7.76 16 29 H 0.11 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.25 7.67 -51.93 -0.40 -0.15 16 31 H 0.06 0.20 7.67 -51.93 -0.40 -0.19 16 32 H 0.20 0.85 6.22 -52.48 -0.33 0.52 16 33 H 0.41 3.83 8.03 -40.82 -0.33 3.51 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.04 0.62 6.49 -51.93 -0.34 0.28 16 40 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 42 H 0.36 7.79 5.53 -40.82 -0.23 7.56 16 43 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 44 H 0.18 2.03 7.58 -52.48 -0.40 1.63 16 LS Contribution 371.12 15.07 5.59 5.59 Total: -1.00 -34.96 371.12 -5.35 -40.31 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: -6.09 Total: 7.44 kcal Atomic # 6 Polarization: 2.09 SS G_CDS: 0.03 Total: 2.12 kcal Atomic # 7 Polarization: -52.29 SS G_CDS: 0.27 Total: -52.02 kcal Atomic # 8 Polarization: -19.49 SS G_CDS: -0.40 Total: -19.89 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.76 Total: 16.45 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.96 -5.35 -40.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134988446.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.392 kcal (2) G-P(sol) polarization free energy of solvation -34.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds