Wall clock time and date at job start Fri Apr 10 2020 18:31:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.36019 * 117.00373 * 2 1 4 4 C 1.35498 * 120.48202 * 0.02636 * 3 2 1 5 5 O 1.33826 * 121.01768 * 179.97438 * 4 3 2 6 6 C 1.34295 * 122.04411 * 0.02562 * 5 4 3 7 7 C 1.48043 * 119.57495 * 179.97438 * 6 5 4 8 8 O 1.21524 * 119.99690 * 174.81696 * 7 6 5 9 9 N 1.34766 * 120.00149 * 354.81300 * 7 6 5 10 10 C 1.46499 * 120.00260 * 185.34461 * 9 7 6 11 11 H 1.09006 * 109.47027 * 326.93151 * 10 9 7 12 12 C 1.52996 * 109.47268 * 86.93130 * 10 9 7 13 13 C 1.52997 * 109.47604 * 206.93440 * 10 9 7 14 14 C 1.53007 * 109.47017 * 65.25919 * 13 10 9 15 15 H 1.08994 * 109.46981 * 305.87446 * 14 13 10 16 16 C 1.52996 * 109.46973 * 65.87899 * 14 13 10 17 17 N 1.46501 * 109.47203 * 185.87736 * 14 13 10 18 18 C 1.36934 * 120.00272 * 157.43558 * 17 14 13 19 19 H 1.07995 * 119.99900 * 4.92052 * 18 17 14 20 20 C 1.38809 * 119.99979 * 184.91856 * 18 17 14 21 21 N 1.31623 * 119.99807 * 184.33414 * 20 18 17 22 22 Si 1.86795 * 120.00335 * 4.33744 * 20 18 17 23 23 H 1.48502 * 109.47210 * 93.38800 * 22 20 18 24 24 H 1.48494 * 109.47479 * 213.38929 * 22 20 18 25 25 H 1.48495 * 109.47138 * 333.38960 * 22 20 18 26 26 C 1.35801 * 120.84701 * 359.97438 * 6 5 4 27 27 C 1.42006 * 120.48757 * 180.02562 * 3 2 1 28 28 O 1.22125 * 120.91738 * 359.97438 * 27 3 2 29 29 H 1.09003 * 109.47057 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46816 * 299.99479 * 1 2 3 31 31 H 1.08996 * 109.47074 * 59.99930 * 1 2 3 32 32 H 1.08004 * 119.49325 * 359.97438 * 4 3 2 33 33 H 0.97002 * 120.00104 * 5.34165 * 9 7 6 34 34 H 1.08999 * 109.47479 * 300.00143 * 12 10 9 35 35 H 1.08998 * 109.47445 * 60.00566 * 12 10 9 36 36 H 1.09007 * 109.47167 * 180.02562 * 12 10 9 37 37 H 1.08992 * 109.47778 * 185.26084 * 13 10 9 38 38 H 1.09007 * 109.47144 * 305.26528 * 13 10 9 39 39 H 1.09003 * 109.46942 * 299.99991 * 16 14 13 40 40 H 1.08995 * 109.47352 * 59.99488 * 16 14 13 41 41 H 1.09004 * 109.47343 * 179.97438 * 16 14 13 42 42 H 0.97004 * 119.99811 * 337.43692 * 17 14 13 43 43 H 0.96994 * 119.99837 * 180.02562 * 21 20 18 44 44 H 1.08008 * 120.55264 * 179.97438 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0465 1.2119 0.0000 4 6 1.3182 2.3545 0.0005 5 8 1.9147 3.5525 0.0011 6 6 3.2513 3.6830 0.0006 7 6 3.8534 5.0354 0.0006 8 8 5.0581 5.1641 0.0952 9 7 3.0656 6.1238 -0.1044 10 6 3.6667 7.4546 -0.2223 11 1 4.5974 7.4844 0.3443 12 6 3.9559 7.7550 -1.6943 13 6 2.6989 8.5023 0.3314 14 6 2.5119 8.2804 1.8337 15 1 2.2054 7.2501 2.0134 16 6 3.8318 8.5536 2.5577 17 7 1.4811 9.1915 2.3373 18 6 0.8110 8.8949 3.4941 19 1 1.0962 8.0318 4.0772 20 6 -0.2347 9.7037 3.9173 21 7 -0.8228 9.4690 5.0712 22 14 -0.8075 11.1251 2.8492 23 1 -1.9287 10.6750 1.9857 24 1 -1.2664 12.2411 3.7146 25 1 0.3173 11.5892 1.9979 26 6 4.0576 2.5902 0.0000 27 6 3.4640 1.2982 -0.0005 28 8 4.1539 0.2905 -0.0006 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 0.2397 2.2976 0.0005 33 1 2.1005 6.0260 -0.1019 34 1 4.6455 7.0086 -2.0888 35 1 3.0253 7.7253 -2.2609 36 1 4.4036 8.7450 -1.7820 37 1 3.1048 9.4990 0.1591 38 1 1.7365 8.4099 -0.1720 39 1 4.5988 7.8758 2.1829 40 1 4.1383 9.5840 2.3779 41 1 3.6985 8.3960 3.6280 42 1 1.2732 10.0048 1.8513 43 1 -1.5538 10.0339 5.3667 44 1 5.1320 2.7007 -0.0008 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134988446.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:40 Heat of formation + Delta-G solvation = -109.236653 kcal Electronic energy + Delta-G solvation = -27531.827247 eV Core-core repulsion = 23451.144135 eV Total energy + Delta-G solvation = -4080.683112 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.156 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.31787 -41.13429 -40.26508 -39.28970 -38.54687 -36.41209 -34.15424 -33.86630 -32.97487 -31.92107 -30.67493 -28.72279 -27.63942 -26.53450 -25.44621 -25.04714 -23.08041 -22.08565 -21.29271 -20.32227 -19.92254 -19.66584 -18.95937 -17.99677 -17.47592 -17.14394 -16.79486 -16.56213 -16.23402 -16.11750 -15.98574 -15.70906 -15.47417 -15.29797 -15.25873 -15.07988 -14.61921 -14.39447 -13.96277 -13.76946 -13.49664 -13.38812 -13.00367 -12.79734 -12.72064 -12.48402 -12.46589 -12.20010 -12.06302 -11.80451 -11.65494 -11.57476 -11.50906 -11.11354 -10.95587 -10.93282 -10.23719 -9.44300 -9.26758 -7.97778 -5.31117 -0.86577 -0.19974 0.86717 1.42010 1.46549 1.47494 1.54090 1.80003 2.01164 2.19956 2.53438 3.16329 3.21360 3.30602 3.33398 3.47548 3.82941 3.98921 4.13629 4.20175 4.20760 4.25447 4.29865 4.37830 4.46306 4.58784 4.66776 4.74500 4.76505 4.79018 4.93987 4.97365 5.06283 5.09498 5.32289 5.37836 5.41751 5.57370 5.67411 5.83404 5.94146 6.25924 6.26676 6.43791 6.80848 7.14398 7.90735 8.10763 9.24005 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.012514 B = 0.003147 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2236.906198 B = 8894.588817 C =10285.246760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.001 3.999 2 O -0.313 6.313 3 C -0.075 4.075 4 C 0.033 3.967 5 O -0.181 6.181 6 C 0.107 3.893 7 C 0.579 3.421 8 O -0.530 6.530 9 N -0.688 5.688 10 C 0.142 3.858 11 H 0.088 0.912 12 C -0.156 4.156 13 C -0.124 4.124 14 C 0.170 3.830 15 H 0.043 0.957 16 C -0.162 4.162 17 N -0.751 5.751 18 C -0.226 4.226 19 H 0.050 0.950 20 C -0.067 4.067 21 N -0.988 5.988 22 Si 0.960 3.040 23 H -0.278 1.278 24 H -0.304 1.304 25 H -0.246 1.246 26 C -0.237 4.237 27 C 0.397 3.603 28 O -0.515 6.515 29 H 0.119 0.881 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.251 0.749 33 H 0.420 0.580 34 H 0.052 0.948 35 H 0.073 0.927 36 H 0.084 0.916 37 H 0.095 0.905 38 H 0.085 0.915 39 H 0.062 0.938 40 H 0.055 0.945 41 H 0.022 0.978 42 H 0.368 0.632 43 H 0.256 0.744 44 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.349 -10.223 -18.601 21.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 O -0.227 6.227 3 C -0.122 4.122 4 C -0.033 4.033 5 O -0.082 6.082 6 C 0.055 3.945 7 C 0.362 3.638 8 O -0.409 6.409 9 N -0.339 5.339 10 C 0.038 3.962 11 H 0.106 0.894 12 C -0.214 4.214 13 C -0.162 4.162 14 C 0.062 3.938 15 H 0.061 0.939 16 C -0.221 4.221 17 N -0.395 5.395 18 C -0.357 4.357 19 H 0.068 0.932 20 C -0.258 4.258 21 N -0.638 5.638 22 Si 0.788 3.212 23 H -0.204 1.204 24 H -0.232 1.232 25 H -0.170 1.170 26 C -0.259 4.259 27 C 0.288 3.712 28 O -0.403 6.403 29 H 0.138 0.862 30 H 0.094 0.906 31 H 0.101 0.899 32 H 0.266 0.734 33 H 0.257 0.743 34 H 0.071 0.929 35 H 0.092 0.908 36 H 0.102 0.898 37 H 0.113 0.887 38 H 0.104 0.896 39 H 0.081 0.919 40 H 0.074 0.926 41 H 0.041 0.959 42 H 0.202 0.798 43 H 0.065 0.935 44 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 3.406 -10.689 -18.385 21.538 hybrid contribution -1.002 0.447 0.387 1.164 sum 2.403 -10.242 -17.998 20.848 Atomic orbital electron populations 1.23621 0.75647 1.06724 1.03316 1.86251 1.23804 1.23650 1.89043 1.20806 0.94393 0.87353 1.09691 1.24703 0.99639 0.79419 0.99507 1.82973 1.19104 1.31715 1.74414 1.22254 0.80839 0.95467 0.95965 1.17361 0.86169 0.82496 0.77765 1.90880 1.14275 1.85011 1.50687 1.46064 1.11210 1.05893 1.70761 1.21220 0.97204 0.79631 0.98140 0.89363 1.22136 1.02701 1.02892 0.93706 1.22112 1.00388 0.99669 0.94060 1.20407 0.87546 0.93230 0.92623 0.93903 1.22364 0.98649 1.01363 0.99733 1.42834 1.44275 1.25084 1.27292 1.18962 1.09275 1.08699 0.98738 0.93226 1.25555 0.99171 1.02575 0.98527 1.69912 1.27859 1.43114 1.22949 0.85327 0.78951 0.78643 0.78274 1.20418 1.23153 1.17023 1.23051 1.03729 0.90917 1.08220 1.17515 0.87712 0.89577 0.76354 1.90814 1.66345 1.39287 1.43857 0.86247 0.90553 0.89932 0.73363 0.74256 0.92874 0.90818 0.89756 0.88654 0.89644 0.91905 0.92637 0.95860 0.79815 0.93529 0.81031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.00 9.82 113.37 1.11 1.12 16 2 O -0.31 -6.40 10.35 -79.19 -0.82 -7.22 16 3 C -0.08 -1.55 6.72 22.57 0.15 -1.40 16 4 C 0.03 0.43 10.43 67.19 0.70 1.13 16 5 O -0.18 -2.78 9.07 2.11 0.02 -2.76 16 6 C 0.11 2.15 6.90 24.31 0.17 2.32 16 7 C 0.58 12.81 7.77 86.85 0.68 13.48 16 8 O -0.53 -14.86 15.87 -3.79 -0.06 -14.92 16 9 N -0.69 -12.76 4.42 -445.25 -1.97 -14.73 16 10 C 0.14 2.66 2.52 44.99 0.11 2.77 16 11 H 0.09 1.95 5.67 -2.38 -0.01 1.93 16 12 C -0.16 -2.23 9.50 71.98 0.68 -1.55 16 13 C -0.12 -2.65 4.40 30.60 0.13 -2.52 16 14 C 0.17 5.46 2.91 44.99 0.13 5.59 16 15 H 0.04 1.47 7.56 -2.39 -0.02 1.45 16 16 C -0.16 -5.21 9.24 71.98 0.67 -4.54 16 17 N -0.75 -31.34 4.93 -322.95 -1.59 -32.94 16 18 C -0.23 -12.13 10.39 84.03 0.87 -11.26 16 19 H 0.05 3.00 8.06 -2.91 -0.02 2.97 16 20 C -0.07 -3.78 5.50 84.86 0.47 -3.32 16 21 N -0.99 -61.62 13.97 21.65 0.30 -61.31 16 22 Si 0.96 42.79 27.97 68.60 1.92 44.70 16 23 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 24 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 25 H -0.25 -9.49 6.20 99.48 0.62 -8.88 16 26 C -0.24 -5.63 9.56 22.69 0.22 -5.41 16 27 C 0.40 10.84 6.82 24.19 0.16 11.01 16 28 O -0.52 -18.30 17.74 8.85 0.16 -18.15 16 29 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.08 0.39 7.67 -2.39 -0.02 0.37 16 31 H 0.08 0.28 7.67 -2.39 -0.02 0.26 16 32 H 0.25 0.85 6.22 -2.91 -0.02 0.83 16 33 H 0.42 6.45 8.03 -92.71 -0.74 5.71 16 34 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.08 1.02 8.14 -2.38 -0.02 1.00 16 37 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 39 H 0.06 1.76 6.49 -2.39 -0.02 1.74 16 40 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 41 H 0.02 0.87 8.14 -2.38 -0.02 0.85 16 42 H 0.37 14.48 5.53 -92.71 -0.51 13.97 16 43 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 44 H 0.17 4.20 7.58 -2.91 -0.02 4.17 16 Total: -1.00 -80.16 371.12 3.92 -76.24 By element: Atomic # 1 Polarization: 23.95 SS G_CDS: -0.30 Total: 23.65 kcal Atomic # 6 Polarization: 1.17 SS G_CDS: 6.26 Total: 7.43 kcal Atomic # 7 Polarization: -105.72 SS G_CDS: -3.26 Total: -108.98 kcal Atomic # 8 Polarization: -42.35 SS G_CDS: -0.70 Total: -43.05 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 1.92 Total: 44.70 kcal Total: -80.16 3.92 -76.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134988446.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.994 kcal (2) G-P(sol) polarization free energy of solvation -80.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds