Wall clock time and date at job start Fri Apr 10 2020 18:31:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30014 * 127.33812 * 2 1 4 4 O 1.20657 * 112.30013 * 180.27290 * 3 2 1 5 5 C 1.33494 * 113.15883 * 359.73738 * 4 3 2 6 6 C 1.50695 * 126.83038 * 179.97438 * 5 4 3 7 7 C 1.37360 * 106.33957 * 359.97438 * 5 4 3 8 8 C 1.47402 * 128.56428 * 179.97438 * 7 5 4 9 9 O 1.21603 * 120.00063 * 89.99745 * 8 7 5 10 10 N 1.34777 * 119.99679 * 269.99434 * 8 7 5 11 11 C 1.46499 * 119.99665 * 179.72400 * 10 8 7 12 12 C 1.53004 * 109.47198 * 180.27868 * 11 10 8 13 13 C 1.52997 * 109.47000 * 179.97438 * 12 11 10 14 14 N 1.46904 * 109.46983 * 179.97438 * 13 12 11 15 15 C 1.46903 * 111.00204 * 180.02562 * 14 13 12 16 16 C 1.50699 * 109.46998 * 179.97438 * 15 14 13 17 17 O 1.21295 * 120.00000 * 0.02562 * 16 15 14 18 18 N 1.34775 * 119.99798 * 179.97438 * 16 15 14 19 19 C 1.37094 * 120.00027 * 180.02562 * 18 16 15 20 20 H 1.07996 * 120.00216 * 0.02562 * 19 18 16 21 21 C 1.38956 * 120.00110 * 180.02562 * 19 18 16 22 22 N 1.31410 * 120.00155 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 119.99952 * 0.02562 * 21 19 18 24 24 H 1.48502 * 109.47116 * 89.99401 * 23 21 19 25 25 H 1.48493 * 109.47204 * 209.99820 * 23 21 19 26 26 H 1.48502 * 109.46930 * 329.99710 * 23 21 19 27 27 H 1.09006 * 109.46872 * 270.14916 * 1 2 3 28 28 H 1.09002 * 109.46935 * 30.14135 * 1 2 3 29 29 H 1.08994 * 109.47636 * 150.14309 * 1 2 3 30 30 H 1.09004 * 109.47275 * 269.99884 * 6 5 4 31 31 H 1.09002 * 109.47217 * 30.00126 * 6 5 4 32 32 H 1.09009 * 109.47314 * 150.00239 * 6 5 4 33 33 H 0.97001 * 120.00485 * 0.02562 * 10 8 7 34 34 H 1.09009 * 109.47454 * 300.27637 * 11 10 8 35 35 H 1.08998 * 109.47492 * 60.27932 * 11 10 8 36 36 H 1.08995 * 109.46638 * 300.00121 * 12 11 10 37 37 H 1.09006 * 109.47139 * 60.00254 * 12 11 10 38 38 H 1.08995 * 109.47672 * 299.99669 * 13 12 11 39 39 H 1.09007 * 109.47288 * 60.00489 * 13 12 11 40 40 H 1.00901 * 110.99709 * 56.04986 * 14 13 12 41 41 H 1.08999 * 109.46830 * 300.00221 * 15 14 13 42 42 H 1.09000 * 109.46616 * 60.00377 * 15 14 13 43 43 H 0.97003 * 119.99741 * 0.02562 * 18 16 15 44 44 H 0.96994 * 120.00260 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2956 1.0337 0.0000 4 8 3.4608 0.7207 -0.0053 5 6 3.6494 -0.6009 -0.0042 6 6 4.9711 -1.3248 -0.0102 7 6 2.3991 -1.1697 0.0035 8 6 2.0399 -2.5993 0.0072 9 8 1.8977 -3.1877 1.0618 10 7 1.8691 -3.2541 -1.1583 11 6 1.5181 -4.6764 -1.1547 12 6 1.3911 -5.1741 -2.5959 13 6 1.0251 -6.6597 -2.5920 14 7 0.9026 -7.1374 -3.9758 15 6 0.5505 -8.5632 -4.0114 16 6 0.4333 -9.0160 -5.4439 17 8 0.6247 -8.2287 -6.3465 18 7 0.1168 -10.2962 -5.7222 19 6 0.0107 -10.7084 -7.0254 20 1 0.1811 -10.0074 -7.8291 21 6 -0.3161 -12.0281 -7.3123 22 7 -0.4183 -12.4231 -8.5615 23 14 -0.6115 -13.2406 -5.9223 24 1 -2.0490 -13.2260 -5.5499 25 1 -0.2289 -14.6050 -6.3659 26 1 0.2084 -12.8543 -4.7460 27 1 -0.3633 0.0027 1.0277 28 1 -0.3633 0.8887 -0.5160 29 1 -0.3634 -0.8912 -0.5116 30 1 5.2842 -1.5010 -1.0394 31 1 5.7201 -0.7179 0.4986 32 1 4.8650 -2.2792 0.5057 33 1 1.9828 -2.7848 -1.9996 34 1 2.2968 -5.2416 -0.6424 35 1 0.5687 -4.8151 -0.6375 36 1 0.6124 -4.6090 -3.1081 37 1 2.3405 -5.0356 -3.1132 38 1 1.8040 -7.2245 -2.0800 39 1 0.0757 -6.7987 -2.0747 40 1 1.7491 -6.9606 -4.4957 41 1 1.3262 -9.1415 -3.5094 42 1 -0.4020 -8.7149 -3.5037 43 1 -0.0358 -10.9260 -5.0003 44 1 -0.6468 -13.3442 -8.7618 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001154525215.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:56 Heat of formation + Delta-G solvation = -16.328899 kcal Electronic energy + Delta-G solvation = -25695.521893 eV Core-core repulsion = 21651.160314 eV Total energy + Delta-G solvation = -4044.361579 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -45.32227 -40.00728 -38.54318 -36.73148 -35.06190 -34.99250 -34.08589 -33.91780 -31.77326 -31.46597 -29.26515 -28.64700 -27.39802 -25.47446 -24.20949 -22.99444 -21.87828 -21.23651 -20.38350 -19.40711 -18.49183 -18.27459 -18.18186 -16.79443 -16.62014 -16.34081 -15.89605 -15.54253 -15.01717 -14.80567 -14.64191 -14.25556 -14.06256 -14.00368 -13.69891 -13.66761 -13.60161 -13.22830 -13.21375 -12.97645 -12.88500 -12.41706 -12.22331 -11.99714 -11.80901 -11.61210 -11.56484 -11.22928 -11.08430 -10.65292 -10.61558 -10.35419 -10.00010 -9.86808 -9.59951 -9.55954 -8.64101 -8.23936 -8.18968 -6.33506 -3.85119 0.82376 1.45083 1.94226 2.32719 2.80879 3.00430 3.05239 3.13440 3.63531 3.70734 3.76084 4.00632 4.08357 4.28386 4.41107 4.66751 4.67799 4.73713 4.80318 4.89466 4.90687 4.97726 5.00923 5.07437 5.18557 5.19150 5.27258 5.34635 5.36024 5.47892 5.55849 5.58340 5.76209 5.80485 5.87183 5.91162 5.98809 6.96299 7.01270 7.49815 7.55633 7.66898 7.76519 8.11776 8.57035 8.92317 9.39765 9.79646 10.79540 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.030006 B = 0.001586 C = 0.001581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.921263 B =17645.450074 C =17711.205487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.057 3.943 3 N -0.355 5.355 4 O 0.097 5.903 5 C 0.022 3.978 6 C -0.082 4.082 7 C -0.257 4.257 8 C 0.600 3.400 9 O -0.524 6.524 10 N -0.716 5.716 11 C 0.120 3.880 12 C -0.130 4.130 13 C 0.063 3.937 14 N -0.670 5.670 15 C 0.048 3.952 16 C 0.449 3.551 17 O -0.566 6.566 18 N -0.590 5.590 19 C -0.306 4.306 20 H 0.120 0.880 21 C 0.041 3.959 22 N -0.881 5.881 23 Si 0.880 3.120 24 H -0.270 1.270 25 H -0.277 1.277 26 H -0.270 1.270 27 H 0.087 0.913 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.097 0.903 31 H 0.092 0.908 32 H 0.095 0.905 33 H 0.405 0.595 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.082 0.918 37 H 0.070 0.930 38 H 0.030 0.970 39 H 0.075 0.925 40 H 0.351 0.649 41 H 0.045 0.955 42 H 0.088 0.912 43 H 0.371 0.629 44 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.637 20.932 20.486 30.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.106 4.106 3 N -0.062 5.062 4 O 0.036 5.964 5 C -0.041 4.041 6 C -0.139 4.139 7 C -0.264 4.264 8 C 0.384 3.616 9 O -0.399 6.399 10 N -0.368 5.368 11 C -0.004 4.004 12 C -0.168 4.168 13 C -0.068 4.068 14 N -0.302 5.302 15 C -0.085 4.085 16 C 0.235 3.765 17 O -0.447 6.447 18 N -0.229 5.229 19 C -0.435 4.435 20 H 0.137 0.863 21 C -0.162 4.162 22 N -0.521 5.521 23 Si 0.707 3.293 24 H -0.196 1.196 25 H -0.202 1.202 26 H -0.195 1.195 27 H 0.105 0.895 28 H 0.103 0.897 29 H 0.103 0.897 30 H 0.116 0.884 31 H 0.111 0.889 32 H 0.113 0.887 33 H 0.240 0.760 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.101 0.899 37 H 0.089 0.911 38 H 0.049 0.951 39 H 0.093 0.907 40 H 0.170 0.830 41 H 0.063 0.937 42 H 0.106 0.894 43 H 0.203 0.797 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 6.777 22.360 20.398 31.016 hybrid contribution 0.478 -2.130 0.849 2.342 sum 7.255 20.231 21.246 30.221 Atomic orbital electron populations 1.20248 0.84998 1.04293 1.04091 1.24778 0.98649 0.86391 1.00757 1.73636 0.89101 1.23304 1.20109 1.84550 1.21530 1.22522 1.67829 1.24659 0.97369 0.83824 0.98284 1.20512 0.89027 0.99482 1.04855 1.21890 0.92977 0.95225 1.16313 1.16847 0.76844 0.83882 0.84013 1.90848 1.49947 1.68021 1.31125 1.45987 1.70720 1.11724 1.08356 1.21418 1.01546 0.79667 0.97770 1.21751 1.03197 0.96941 0.94931 1.21827 1.00776 0.93675 0.90475 1.60034 1.42192 1.16357 1.11631 1.21705 1.01374 0.88774 0.96617 1.19704 0.84098 0.82881 0.89855 1.90564 1.53898 1.52943 1.47344 1.42207 1.63534 1.09027 1.08166 1.19433 1.44988 0.96288 0.82771 0.86276 1.25047 0.97566 0.97037 0.96514 1.69618 1.47278 1.18007 1.17152 0.86662 0.79142 0.81713 0.81803 1.19569 1.20173 1.19535 0.89487 0.89717 0.89743 0.88443 0.88881 0.88675 0.76049 0.91065 0.90835 0.89931 0.91081 0.95138 0.90684 0.82991 0.93673 0.89392 0.79663 0.91587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.51 10.49 36.01 0.38 -0.13 16 2 C 0.06 0.51 7.59 -79.77 -0.61 -0.09 16 3 N -0.35 -3.56 12.01 34.78 0.42 -3.14 16 4 O 0.10 0.85 11.06 18.65 0.21 1.06 16 5 C 0.02 0.16 7.55 -34.63 -0.26 -0.10 16 6 C -0.08 -0.31 10.33 36.00 0.37 0.07 16 7 C -0.26 -2.26 6.24 -102.89 -0.64 -2.90 16 8 C 0.60 5.75 7.60 -12.53 -0.10 5.65 16 9 O -0.52 -6.97 17.11 5.27 0.09 -6.88 16 10 N -0.72 -5.13 5.55 -61.39 -0.34 -5.47 16 11 C 0.12 0.89 5.67 -4.04 -0.02 0.87 16 12 C -0.13 -1.00 5.59 -26.73 -0.15 -1.15 16 13 C 0.06 0.62 5.69 -3.82 -0.02 0.60 16 14 N -0.67 -9.54 6.12 -115.05 -0.70 -10.24 16 15 C 0.05 0.76 6.17 -4.97 -0.03 0.73 16 16 C 0.45 9.97 7.82 -10.99 -0.09 9.89 16 17 O -0.57 -14.92 15.78 5.54 0.09 -14.84 16 18 N -0.59 -13.84 5.09 -10.96 -0.06 -13.90 16 19 C -0.31 -8.58 10.16 -14.93 -0.15 -8.73 16 20 H 0.12 3.82 7.39 -52.49 -0.39 3.43 16 21 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 22 N -0.88 -25.52 13.96 55.50 0.77 -24.74 16 23 Si 0.88 19.12 27.74 -169.99 -4.71 14.41 16 24 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 25 H -0.28 -6.03 7.11 56.52 0.40 -5.62 16 26 H -0.27 -5.32 6.52 56.52 0.37 -4.95 16 27 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.10 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.09 0.21 8.14 -51.93 -0.42 -0.22 16 32 H 0.09 0.40 8.11 -51.92 -0.42 -0.02 16 33 H 0.40 2.13 8.46 -40.82 -0.35 1.79 16 34 H 0.07 0.56 8.14 -51.92 -0.42 0.13 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 39 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.35 5.14 8.43 -39.29 -0.33 4.81 16 41 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 43 H 0.37 7.60 5.76 -40.82 -0.24 7.36 16 44 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 383.85 15.07 5.78 5.78 Total: -1.00 -36.00 383.85 -6.25 -42.25 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: -6.38 Total: 9.99 kcal Atomic # 6 Polarization: 7.13 SS G_CDS: -1.41 Total: 5.72 kcal Atomic # 7 Polarization: -57.58 SS G_CDS: 0.09 Total: -57.49 kcal Atomic # 8 Polarization: -21.04 SS G_CDS: 0.38 Total: -20.66 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -4.71 Total: 14.41 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -36.00 -6.25 -42.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154525215.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.920 kcal (2) G-P(sol) polarization free energy of solvation -35.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds