Wall clock time and date at job start Fri Apr 10 2020 18:31:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30014 * 127.33812 * 2 1 4 4 O 1.20657 * 112.30013 * 180.27290 * 3 2 1 5 5 C 1.33494 * 113.15883 * 359.73738 * 4 3 2 6 6 C 1.50695 * 126.83038 * 179.97438 * 5 4 3 7 7 C 1.37360 * 106.33957 * 359.97438 * 5 4 3 8 8 C 1.47402 * 128.56428 * 179.97438 * 7 5 4 9 9 O 1.21603 * 120.00063 * 89.99745 * 8 7 5 10 10 N 1.34777 * 119.99679 * 269.99434 * 8 7 5 11 11 C 1.46499 * 119.99665 * 179.72400 * 10 8 7 12 12 C 1.53004 * 109.47198 * 180.27868 * 11 10 8 13 13 C 1.52997 * 109.47000 * 179.97438 * 12 11 10 14 14 N 1.46904 * 109.46983 * 179.97438 * 13 12 11 15 15 C 1.46903 * 111.00204 * 180.02562 * 14 13 12 16 16 C 1.50699 * 109.46998 * 179.97438 * 15 14 13 17 17 O 1.21295 * 120.00000 * 0.02562 * 16 15 14 18 18 N 1.34775 * 119.99798 * 179.97438 * 16 15 14 19 19 C 1.37094 * 120.00027 * 180.02562 * 18 16 15 20 20 H 1.07996 * 120.00216 * 0.02562 * 19 18 16 21 21 C 1.38956 * 120.00110 * 180.02562 * 19 18 16 22 22 N 1.31410 * 120.00155 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 119.99952 * 0.02562 * 21 19 18 24 24 H 1.48502 * 109.47116 * 89.99401 * 23 21 19 25 25 H 1.48493 * 109.47204 * 209.99820 * 23 21 19 26 26 H 1.48502 * 109.46930 * 329.99710 * 23 21 19 27 27 H 1.09006 * 109.46872 * 270.14916 * 1 2 3 28 28 H 1.09002 * 109.46935 * 30.14135 * 1 2 3 29 29 H 1.08994 * 109.47636 * 150.14309 * 1 2 3 30 30 H 1.09004 * 109.47275 * 269.99884 * 6 5 4 31 31 H 1.09002 * 109.47217 * 30.00126 * 6 5 4 32 32 H 1.09009 * 109.47314 * 150.00239 * 6 5 4 33 33 H 0.97001 * 120.00485 * 0.02562 * 10 8 7 34 34 H 1.09009 * 109.47454 * 300.27637 * 11 10 8 35 35 H 1.08998 * 109.47492 * 60.27932 * 11 10 8 36 36 H 1.08995 * 109.46638 * 300.00121 * 12 11 10 37 37 H 1.09006 * 109.47139 * 60.00254 * 12 11 10 38 38 H 1.08995 * 109.47672 * 299.99669 * 13 12 11 39 39 H 1.09007 * 109.47288 * 60.00489 * 13 12 11 40 40 H 1.00901 * 110.99709 * 56.04986 * 14 13 12 41 41 H 1.08999 * 109.46830 * 300.00221 * 15 14 13 42 42 H 1.09000 * 109.46616 * 60.00377 * 15 14 13 43 43 H 0.97003 * 119.99741 * 0.02562 * 18 16 15 44 44 H 0.96994 * 120.00260 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2956 1.0337 0.0000 4 8 3.4608 0.7207 -0.0053 5 6 3.6494 -0.6009 -0.0042 6 6 4.9711 -1.3248 -0.0102 7 6 2.3991 -1.1697 0.0035 8 6 2.0399 -2.5993 0.0072 9 8 1.8977 -3.1877 1.0618 10 7 1.8691 -3.2541 -1.1583 11 6 1.5181 -4.6764 -1.1547 12 6 1.3911 -5.1741 -2.5959 13 6 1.0251 -6.6597 -2.5920 14 7 0.9026 -7.1374 -3.9758 15 6 0.5505 -8.5632 -4.0114 16 6 0.4333 -9.0160 -5.4439 17 8 0.6247 -8.2287 -6.3465 18 7 0.1168 -10.2962 -5.7222 19 6 0.0107 -10.7084 -7.0254 20 1 0.1811 -10.0074 -7.8291 21 6 -0.3161 -12.0281 -7.3123 22 7 -0.4183 -12.4231 -8.5615 23 14 -0.6115 -13.2406 -5.9223 24 1 -2.0490 -13.2260 -5.5499 25 1 -0.2289 -14.6050 -6.3659 26 1 0.2084 -12.8543 -4.7460 27 1 -0.3633 0.0027 1.0277 28 1 -0.3633 0.8887 -0.5160 29 1 -0.3634 -0.8912 -0.5116 30 1 5.2842 -1.5010 -1.0394 31 1 5.7201 -0.7179 0.4986 32 1 4.8650 -2.2792 0.5057 33 1 1.9828 -2.7848 -1.9996 34 1 2.2968 -5.2416 -0.6424 35 1 0.5687 -4.8151 -0.6375 36 1 0.6124 -4.6090 -3.1081 37 1 2.3405 -5.0356 -3.1132 38 1 1.8040 -7.2245 -2.0800 39 1 0.0757 -6.7987 -2.0747 40 1 1.7491 -6.9606 -4.4957 41 1 1.3262 -9.1415 -3.5094 42 1 -0.4020 -8.7149 -3.5037 43 1 -0.0358 -10.9260 -5.0003 44 1 -0.6468 -13.3442 -8.7618 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001154525215.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:55 Heat of formation + Delta-G solvation = -45.983692 kcal Electronic energy + Delta-G solvation = -25696.807821 eV Core-core repulsion = 21651.160314 eV Total energy + Delta-G solvation = -4045.647507 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -45.96611 -40.75280 -40.28514 -37.66775 -36.15556 -35.72219 -35.61205 -34.61724 -33.74750 -32.40588 -29.83541 -29.25459 -28.54329 -26.65911 -25.40853 -24.02084 -22.58250 -21.90982 -21.27803 -20.98801 -20.24511 -19.04574 -18.86153 -17.84980 -17.43361 -17.23725 -17.07267 -16.78562 -16.41838 -15.74571 -15.64174 -15.41569 -15.03804 -14.87602 -14.57199 -14.43120 -14.42235 -14.22224 -14.10410 -14.01885 -13.58663 -13.45602 -13.41522 -13.21644 -12.88519 -12.72619 -12.42506 -12.39597 -12.15554 -11.97039 -11.83357 -11.50548 -11.42761 -11.00069 -10.46603 -10.43364 -10.24204 -10.23316 -9.30831 -8.40718 -6.01729 0.24250 0.80058 1.22150 1.31197 1.36894 1.45630 1.73903 1.96542 2.19508 2.23903 2.76243 3.06890 3.15737 3.20477 3.43126 3.70530 3.85922 4.01836 4.13651 4.19198 4.20294 4.23724 4.45899 4.47068 4.53092 4.58085 4.58429 4.59460 4.61483 4.71578 4.73975 4.81140 5.03641 5.06616 5.14465 5.20977 5.34180 5.53351 5.91457 6.06257 6.33767 6.42462 6.60416 6.88751 7.00050 7.14748 7.40599 7.97134 8.76851 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.030006 B = 0.001586 C = 0.001581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.921263 B =17645.450074 C =17711.205487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.050 3.950 3 N -0.380 5.380 4 O 0.090 5.910 5 C 0.035 3.965 6 C -0.082 4.082 7 C -0.280 4.280 8 C 0.607 3.393 9 O -0.566 6.566 10 N -0.702 5.702 11 C 0.126 3.874 12 C -0.118 4.118 13 C 0.063 3.937 14 N -0.689 5.689 15 C 0.062 3.938 16 C 0.447 3.553 17 O -0.615 6.615 18 N -0.591 5.591 19 C -0.330 4.330 20 H 0.055 0.945 21 C -0.016 4.016 22 N -0.934 5.934 23 Si 0.966 3.034 24 H -0.258 1.258 25 H -0.276 1.276 26 H -0.230 1.230 27 H 0.091 0.909 28 H 0.093 0.907 29 H 0.091 0.909 30 H 0.119 0.881 31 H 0.111 0.889 32 H 0.093 0.907 33 H 0.415 0.585 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.047 0.953 39 H 0.082 0.918 40 H 0.345 0.655 41 H 0.078 0.922 42 H 0.114 0.886 43 H 0.390 0.610 44 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.083 20.187 23.436 31.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.112 4.112 3 N -0.089 5.089 4 O 0.030 5.970 5 C -0.028 4.028 6 C -0.139 4.139 7 C -0.288 4.288 8 C 0.392 3.608 9 O -0.445 6.445 10 N -0.353 5.353 11 C 0.002 3.998 12 C -0.156 4.156 13 C -0.066 4.066 14 N -0.322 5.322 15 C -0.071 4.071 16 C 0.235 3.765 17 O -0.500 6.500 18 N -0.233 5.233 19 C -0.459 4.459 20 H 0.073 0.927 21 C -0.214 4.214 22 N -0.575 5.575 23 Si 0.785 3.215 24 H -0.182 1.182 25 H -0.201 1.201 26 H -0.153 1.153 27 H 0.109 0.891 28 H 0.112 0.888 29 H 0.110 0.890 30 H 0.137 0.863 31 H 0.130 0.870 32 H 0.111 0.889 33 H 0.252 0.748 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.095 0.905 37 H 0.097 0.903 38 H 0.065 0.935 39 H 0.100 0.900 40 H 0.164 0.836 41 H 0.096 0.904 42 H 0.132 0.868 43 H 0.226 0.774 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 7.241 21.643 23.348 32.650 hybrid contribution 0.387 -1.776 -0.173 1.826 sum 7.627 19.867 23.175 31.464 Atomic orbital electron populations 1.20354 0.83673 1.05108 1.04588 1.25201 0.99689 0.86313 0.99990 1.73624 0.89625 1.24074 1.21554 1.84520 1.21195 1.23252 1.67987 1.25280 0.98331 0.83240 0.95984 1.20730 0.87602 0.99132 1.06419 1.21901 0.93712 0.94862 1.18279 1.16865 0.76143 0.83977 0.83795 1.90825 1.52115 1.68923 1.32593 1.45889 1.69436 1.11694 1.08290 1.21338 1.01422 0.79609 0.97420 1.21609 1.03369 0.95679 0.94969 1.21909 1.01840 0.94740 0.88084 1.60034 1.42358 1.15498 1.14287 1.21630 1.03917 0.90078 0.91427 1.21049 0.81210 0.81792 0.92450 1.90542 1.55258 1.54208 1.49951 1.42041 1.64317 1.10145 1.06782 1.19014 1.47078 0.96093 0.83720 0.92673 1.26132 0.96219 0.98989 1.00094 1.69803 1.48300 1.18981 1.20412 0.85354 0.80118 0.77526 0.78452 1.18226 1.20099 1.15316 0.89081 0.88778 0.89029 0.86292 0.87047 0.88856 0.74789 0.90884 0.91248 0.90474 0.90349 0.93489 0.89956 0.83591 0.90415 0.86803 0.77435 0.91156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.98 10.49 71.24 0.75 -0.24 16 2 C 0.05 0.89 7.59 45.16 0.34 1.23 16 3 N -0.38 -7.52 12.01 -44.78 -0.54 -8.06 16 4 O 0.09 1.52 11.06 76.98 0.85 2.38 16 5 C 0.04 0.48 7.55 25.48 0.19 0.67 16 6 C -0.08 -0.45 10.33 71.23 0.74 0.29 16 7 C -0.28 -4.71 6.24 -18.74 -0.12 -4.83 16 8 C 0.61 11.01 7.60 86.66 0.66 11.66 16 9 O -0.57 -14.71 17.11 -4.04 -0.07 -14.78 16 10 N -0.70 -8.85 5.55 -466.39 -2.59 -11.44 16 11 C 0.13 1.60 5.67 86.38 0.49 2.09 16 12 C -0.12 -1.53 5.59 30.59 0.17 -1.36 16 13 C 0.06 1.05 5.69 86.30 0.49 1.54 16 14 N -0.69 -17.98 6.12 -517.92 -3.17 -21.15 16 15 C 0.06 1.75 6.17 85.56 0.53 2.28 16 16 C 0.45 19.57 7.82 87.66 0.69 20.25 16 17 O -0.62 -33.36 15.78 -3.07 -0.05 -33.41 16 18 N -0.59 -27.27 5.09 -306.99 -1.56 -28.84 16 19 C -0.33 -19.13 10.16 84.04 0.85 -18.27 16 20 H 0.06 3.82 7.39 -2.91 -0.02 3.80 16 21 C -0.02 -0.86 5.50 84.93 0.47 -0.40 16 22 N -0.93 -55.92 13.96 21.66 0.30 -55.62 16 23 Si 0.97 38.11 27.74 68.60 1.90 40.02 16 24 H -0.26 -9.68 7.11 99.48 0.71 -8.97 16 25 H -0.28 -10.85 7.11 99.48 0.71 -10.14 16 26 H -0.23 -7.54 6.52 99.48 0.65 -6.89 16 27 H 0.09 1.04 8.14 -2.38 -0.02 1.02 16 28 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.12 0.18 8.14 -2.38 -0.02 0.16 16 31 H 0.11 0.23 8.14 -2.39 -0.02 0.21 16 32 H 0.09 0.61 8.11 -2.38 -0.02 0.59 16 33 H 0.42 3.59 8.46 -92.71 -0.78 2.80 16 34 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 35 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 38 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 39 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 40 H 0.35 9.58 8.43 -89.69 -0.76 8.82 16 41 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 42 H 0.11 2.70 8.14 -2.39 -0.02 2.68 16 43 H 0.39 14.76 5.76 -92.71 -0.53 14.22 16 44 H 0.28 15.24 8.31 -92.71 -0.77 14.47 16 Total: -1.00 -84.03 383.85 0.25 -83.78 By element: Atomic # 1 Polarization: 33.28 SS G_CDS: -1.08 Total: 32.20 kcal Atomic # 6 Polarization: 8.67 SS G_CDS: 6.25 Total: 14.92 kcal Atomic # 7 Polarization: -117.54 SS G_CDS: -7.56 Total: -125.10 kcal Atomic # 8 Polarization: -46.55 SS G_CDS: 0.73 Total: -45.81 kcal Atomic # 14 Polarization: 38.11 SS G_CDS: 1.90 Total: 40.02 kcal Total: -84.03 0.25 -83.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154525215.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.798 kcal (2) G-P(sol) polarization free energy of solvation -84.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds