Wall clock time and date at job start Fri Apr 10 2020 18:32:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42899 * 113.99676 * 2 1 4 4 C 1.52876 * 109.55577 * 59.83717 * 3 2 1 5 5 C 1.54199 * 110.79518 * 178.49792 * 4 3 2 6 6 C 1.53365 * 109.12037 * 0.50605 * 5 4 3 7 7 C 1.50702 * 110.78497 * 178.11085 * 6 5 4 8 8 O 1.21283 * 120.00262 * 120.64077 * 7 6 5 9 9 N 1.34777 * 119.99928 * 300.35983 * 7 6 5 10 10 C 1.46499 * 120.00199 * 180.27479 * 9 7 6 11 11 C 1.50694 * 109.47550 * 180.02562 * 10 9 7 12 12 O 1.21297 * 119.99707 * 0.02562 * 11 10 9 13 13 N 1.34776 * 120.00262 * 180.02562 * 11 10 9 14 14 C 1.37096 * 119.99935 * 180.02562 * 13 11 10 15 15 H 1.07998 * 120.00186 * 0.02562 * 14 13 11 16 16 C 1.38957 * 119.99926 * 179.97438 * 14 13 11 17 17 N 1.31413 * 119.99843 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 119.99989 * 0.02562 * 16 14 13 19 19 H 1.48496 * 109.47072 * 89.99363 * 18 16 14 20 20 H 1.48498 * 109.47116 * 209.99800 * 18 16 14 21 21 H 1.48503 * 109.46936 * 329.99329 * 18 16 14 22 22 C 1.53365 * 109.14030 * 300.35360 * 6 5 4 23 23 C 1.52880 * 109.55123 * 180.15702 * 3 2 1 24 24 C 1.52209 * 107.60638 * 56.84774 * 6 5 4 25 25 O 1.20753 * 122.58753 * 120.88547 * 24 6 5 26 26 C 1.52133 * 114.82371 * 300.89922 * 24 6 5 27 27 H 1.08998 * 109.46916 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47740 * 300.00376 * 1 2 3 29 29 H 1.09004 * 109.47335 * 60.00581 * 1 2 3 30 30 H 1.09000 * 109.25195 * 298.39817 * 4 3 2 31 31 H 1.09007 * 109.24947 * 57.86097 * 4 3 2 32 32 H 1.09001 * 109.17481 * 240.97249 * 5 4 3 33 33 H 1.09008 * 110.38067 * 120.76750 * 5 4 3 34 34 H 0.97000 * 120.00317 * 0.28382 * 9 7 6 35 35 H 1.08998 * 109.47134 * 300.00670 * 10 9 7 36 36 H 1.09002 * 109.46857 * 59.99862 * 10 9 7 37 37 H 0.96996 * 120.00282 * 0.02562 * 13 11 10 38 38 H 0.97003 * 119.99567 * 179.97438 * 17 16 14 39 39 H 1.08997 * 109.40351 * 180.50471 * 22 6 5 40 40 H 1.08995 * 109.40508 * 300.26318 * 22 6 5 41 41 H 1.08995 * 109.25019 * 302.18234 * 23 3 2 42 42 H 1.09001 * 109.24950 * 61.64288 * 23 3 2 43 43 H 1.09004 * 110.12425 * 119.13500 * 26 24 6 44 44 H 1.08994 * 110.12617 * 240.74817 * 26 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 1.5570 2.0673 1.2455 5 6 2.1982 3.4689 1.2935 6 6 3.0854 3.6579 0.0569 7 6 3.6960 5.0357 0.0424 8 8 4.9019 5.1646 0.0398 9 7 2.9018 6.1245 0.0266 10 6 3.4953 7.4638 0.0063 11 6 2.3998 8.4985 -0.0079 12 8 1.2376 8.1514 -0.0013 13 7 2.7115 9.8096 -0.0280 14 6 1.7148 10.7510 -0.0404 15 1 0.6800 10.4419 -0.0337 16 6 2.0361 12.1027 -0.0606 17 7 1.0808 13.0050 -0.0730 18 14 3.8260 12.6372 -0.0715 19 1 4.2978 12.7584 -1.4742 20 1 3.9545 13.9507 0.6093 21 1 4.6485 11.6274 0.6420 22 6 4.1758 2.5794 0.0507 23 6 3.5343 1.1870 -0.0039 24 6 2.2147 3.4396 -1.1722 25 8 2.0573 4.2881 -2.0168 26 6 1.5578 2.0699 -1.2544 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8901 30 1 0.4727 2.1769 1.2251 31 1 1.8448 1.5062 2.1346 32 1 2.8079 3.5530 2.1931 33 1 1.4268 4.2390 1.3070 34 1 1.9373 6.0215 0.0287 35 1 4.1127 7.6010 0.8940 36 1 4.1118 7.5745 -0.8857 37 1 3.6408 10.0872 -0.0336 38 1 1.3051 13.9487 -0.0867 39 1 4.8145 2.7153 -0.8220 40 1 4.7772 2.6672 0.9554 41 1 3.8523 0.6117 0.8655 42 1 3.8524 0.6728 -0.9109 43 1 0.4727 2.1740 -1.2593 44 1 1.8881 1.5488 -2.1529 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157075582.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:00 Heat of formation + Delta-G solvation = -151.709569 kcal Electronic energy + Delta-G solvation = -28410.345688 eV Core-core repulsion = 24327.820812 eV Total energy + Delta-G solvation = -4082.524876 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.156 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.91838 -39.48496 -38.64232 -38.22022 -36.52834 -34.58513 -33.80182 -31.84235 -31.59379 -31.16761 -29.53310 -27.96639 -26.99072 -24.49295 -23.43137 -22.79104 -21.88729 -20.39306 -19.67273 -18.80534 -17.89866 -17.69627 -17.13727 -16.59723 -16.08588 -15.64727 -15.40913 -15.28068 -15.21555 -15.04487 -14.78991 -14.44643 -14.10793 -13.82252 -13.71758 -13.48850 -13.15668 -13.12793 -12.75887 -12.70135 -12.48944 -12.40659 -12.21885 -12.14718 -12.03834 -11.66184 -11.34315 -11.23933 -11.07095 -10.64728 -10.49021 -10.08858 -10.04555 -9.92321 -9.70183 -9.54823 -8.91678 -8.77927 -8.30778 -6.41037 -3.93512 1.61411 2.51744 2.99087 3.03567 3.05806 3.12362 3.23354 3.55506 3.67505 4.03263 4.04757 4.06078 4.29351 4.32485 4.53150 4.57595 4.69155 4.75900 4.78117 4.85186 4.93477 4.95451 5.01951 5.13701 5.19750 5.27421 5.39560 5.43045 5.58235 5.62925 5.67212 5.70025 5.72573 5.75645 5.80583 5.83411 5.86423 6.50542 6.73240 7.11552 7.43408 7.64980 7.99516 8.25335 8.45240 8.81356 9.29428 9.63068 10.71167 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.026856 B = 0.002779 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.349695 B =10072.909911 C =10569.547643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.372 6.372 3 C 0.123 3.877 4 C -0.145 4.145 5 C -0.100 4.100 6 C -0.129 4.129 7 C 0.534 3.466 8 O -0.541 6.541 9 N -0.694 5.694 10 C 0.106 3.894 11 C 0.439 3.561 12 O -0.578 6.578 13 N -0.576 5.576 14 C -0.310 4.310 15 H 0.121 0.879 16 C 0.045 3.955 17 N -0.874 5.874 18 Si 0.879 3.121 19 H -0.269 1.269 20 H -0.275 1.275 21 H -0.267 1.267 22 C -0.084 4.084 23 C -0.107 4.107 24 C 0.373 3.627 25 O -0.422 6.422 26 C -0.191 4.191 27 H 0.087 0.913 28 H 0.048 0.952 29 H 0.046 0.954 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.081 0.919 34 H 0.411 0.589 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.374 0.626 38 H 0.276 0.724 39 H 0.080 0.920 40 H 0.089 0.911 41 H 0.083 0.917 42 H 0.078 0.922 43 H 0.108 0.892 44 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.633 -25.730 2.362 26.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.291 6.291 3 C 0.083 3.917 4 C -0.183 4.183 5 C -0.138 4.138 6 C -0.133 4.133 7 C 0.318 3.682 8 O -0.419 6.419 9 N -0.347 5.347 10 C -0.022 4.022 11 C 0.225 3.775 12 O -0.462 6.462 13 N -0.214 5.214 14 C -0.438 4.438 15 H 0.139 0.861 16 C -0.159 4.159 17 N -0.513 5.513 18 Si 0.705 3.295 19 H -0.194 1.194 20 H -0.200 1.200 21 H -0.192 1.192 22 C -0.122 4.122 23 C -0.145 4.145 24 C 0.245 3.755 25 O -0.292 6.292 26 C -0.228 4.228 27 H 0.106 0.894 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.093 0.907 31 H 0.103 0.897 32 H 0.106 0.894 33 H 0.100 0.900 34 H 0.249 0.751 35 H 0.105 0.895 36 H 0.104 0.896 37 H 0.208 0.792 38 H 0.086 0.914 39 H 0.099 0.901 40 H 0.108 0.892 41 H 0.101 0.899 42 H 0.097 0.903 43 H 0.126 0.874 44 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 3.651 -25.283 1.900 25.616 hybrid contribution 0.585 0.874 0.004 1.052 sum 4.236 -24.409 1.904 24.847 Atomic orbital electron populations 1.22866 0.81153 1.03007 1.00593 1.87978 1.19801 1.26409 1.94899 1.21457 0.94355 0.83090 0.92800 1.22342 1.01430 0.95616 0.98911 1.21776 0.98785 0.97397 0.95863 1.21884 0.98240 0.95161 0.98002 1.19673 0.86881 0.85096 0.76532 1.90687 1.14064 1.86763 1.50384 1.45583 1.11389 1.04681 1.73052 1.21006 0.95663 0.82096 1.03405 1.19606 0.89595 0.83313 0.85016 1.90541 1.20058 1.80002 1.55574 1.42112 1.08534 1.05279 1.65461 1.19441 0.90501 0.85257 1.48615 0.86090 1.25066 0.98224 0.95476 0.97141 1.69621 1.32038 1.01484 1.48199 0.86667 0.84246 0.79398 0.79164 1.19380 1.19968 1.19236 1.21409 0.95431 0.90273 1.05127 1.21583 0.91365 0.97194 1.04311 1.24831 0.77879 0.88260 0.84553 1.90530 1.53228 1.46107 1.39306 1.23156 1.03109 0.95434 1.01115 0.89422 0.93358 0.93575 0.90653 0.89666 0.89356 0.90040 0.75061 0.89539 0.89582 0.79247 0.91386 0.90096 0.89211 0.89857 0.90308 0.87395 0.86975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 10.22 101.05 1.03 1.15 16 2 O -0.37 -2.93 10.36 -35.23 -0.36 -3.29 16 3 C 0.12 0.93 0.89 -90.38 -0.08 0.85 16 4 C -0.15 -1.02 4.65 -26.17 -0.12 -1.14 16 5 C -0.10 -0.89 5.05 -25.92 -0.13 -1.02 16 6 C -0.13 -1.45 0.70 -155.69 -0.11 -1.56 16 7 C 0.53 8.23 6.23 -10.98 -0.07 8.16 16 8 O -0.54 -9.58 16.10 5.55 0.09 -9.49 16 9 N -0.69 -11.69 4.98 -61.47 -0.31 -12.00 16 10 C 0.11 1.91 6.15 -5.20 -0.03 1.87 16 11 C 0.44 9.90 7.85 -10.99 -0.09 9.81 16 12 O -0.58 -14.94 15.24 5.54 0.08 -14.85 16 13 N -0.58 -13.63 5.09 -10.96 -0.06 -13.68 16 14 C -0.31 -8.63 10.16 -14.93 -0.15 -8.78 16 15 H 0.12 3.83 7.39 -52.49 -0.39 3.45 16 16 C 0.05 1.22 5.50 -17.46 -0.10 1.12 16 17 N -0.87 -25.14 13.96 55.50 0.77 -24.36 16 18 Si 0.88 19.17 27.74 -169.99 -4.71 14.46 16 19 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 20 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 21 H -0.27 -5.32 6.52 56.52 0.37 -4.95 16 22 C -0.08 -0.78 4.37 -26.33 -0.11 -0.90 16 23 C -0.11 -0.78 5.30 -26.58 -0.14 -0.92 16 24 C 0.37 4.45 6.18 -27.58 -0.17 4.28 16 25 O -0.42 -6.76 16.77 6.00 0.10 -6.66 16 26 C -0.19 -1.61 4.99 -26.81 -0.13 -1.74 16 27 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.05 0.24 6.45 -51.93 -0.34 -0.10 16 29 H 0.05 0.24 6.45 -51.93 -0.33 -0.10 16 30 H 0.07 0.47 6.62 -51.93 -0.34 0.13 16 31 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.08 0.77 7.59 -51.92 -0.39 0.38 16 34 H 0.41 7.08 6.74 -40.82 -0.27 6.80 16 35 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 36 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 37 H 0.37 7.81 5.76 -40.82 -0.24 7.57 16 38 H 0.28 7.30 8.31 -40.82 -0.34 6.96 16 39 H 0.08 0.82 8.09 -51.93 -0.42 0.40 16 40 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 43 H 0.11 0.80 6.65 -51.93 -0.35 0.46 16 44 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 352.52 15.07 5.31 5.31 Total: -1.00 -34.38 352.52 -5.53 -39.91 By element: Atomic # 1 Polarization: 19.54 SS G_CDS: -6.04 Total: 13.50 kcal Atomic # 6 Polarization: 11.57 SS G_CDS: -0.40 Total: 11.17 kcal Atomic # 7 Polarization: -50.46 SS G_CDS: 0.41 Total: -50.04 kcal Atomic # 8 Polarization: -34.21 SS G_CDS: -0.09 Total: -34.30 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -4.71 Total: 14.46 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -34.38 -5.53 -39.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157075582.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.803 kcal (2) G-P(sol) polarization free energy of solvation -34.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds