Wall clock time and date at job start Fri Apr 10 2020 18:31:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42899 * 113.99676 * 2 1 4 4 C 1.52876 * 109.55577 * 59.83717 * 3 2 1 5 5 C 1.54199 * 110.79518 * 178.49792 * 4 3 2 6 6 C 1.53365 * 109.12037 * 0.50605 * 5 4 3 7 7 C 1.50702 * 110.78497 * 178.11085 * 6 5 4 8 8 O 1.21283 * 120.00262 * 120.64077 * 7 6 5 9 9 N 1.34777 * 119.99928 * 300.35983 * 7 6 5 10 10 C 1.46499 * 120.00199 * 180.27479 * 9 7 6 11 11 C 1.50694 * 109.47550 * 180.02562 * 10 9 7 12 12 O 1.21297 * 119.99707 * 0.02562 * 11 10 9 13 13 N 1.34776 * 120.00262 * 180.02562 * 11 10 9 14 14 C 1.37096 * 119.99935 * 180.02562 * 13 11 10 15 15 H 1.07998 * 120.00186 * 0.02562 * 14 13 11 16 16 C 1.38957 * 119.99926 * 179.97438 * 14 13 11 17 17 N 1.31413 * 119.99843 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 119.99989 * 0.02562 * 16 14 13 19 19 H 1.48496 * 109.47072 * 89.99363 * 18 16 14 20 20 H 1.48498 * 109.47116 * 209.99800 * 18 16 14 21 21 H 1.48503 * 109.46936 * 329.99329 * 18 16 14 22 22 C 1.53365 * 109.14030 * 300.35360 * 6 5 4 23 23 C 1.52880 * 109.55123 * 180.15702 * 3 2 1 24 24 C 1.52209 * 107.60638 * 56.84774 * 6 5 4 25 25 O 1.20753 * 122.58753 * 120.88547 * 24 6 5 26 26 C 1.52133 * 114.82371 * 300.89922 * 24 6 5 27 27 H 1.08998 * 109.46916 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47740 * 300.00376 * 1 2 3 29 29 H 1.09004 * 109.47335 * 60.00581 * 1 2 3 30 30 H 1.09000 * 109.25195 * 298.39817 * 4 3 2 31 31 H 1.09007 * 109.24947 * 57.86097 * 4 3 2 32 32 H 1.09001 * 109.17481 * 240.97249 * 5 4 3 33 33 H 1.09008 * 110.38067 * 120.76750 * 5 4 3 34 34 H 0.97000 * 120.00317 * 0.28382 * 9 7 6 35 35 H 1.08998 * 109.47134 * 300.00670 * 10 9 7 36 36 H 1.09002 * 109.46857 * 59.99862 * 10 9 7 37 37 H 0.96996 * 120.00282 * 0.02562 * 13 11 10 38 38 H 0.97003 * 119.99567 * 179.97438 * 17 16 14 39 39 H 1.08997 * 109.40351 * 180.50471 * 22 6 5 40 40 H 1.08995 * 109.40508 * 300.26318 * 22 6 5 41 41 H 1.08995 * 109.25019 * 302.18234 * 23 3 2 42 42 H 1.09001 * 109.24950 * 61.64288 * 23 3 2 43 43 H 1.09004 * 110.12425 * 119.13500 * 26 24 6 44 44 H 1.08994 * 110.12617 * 240.74817 * 26 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 1.5570 2.0673 1.2455 5 6 2.1982 3.4689 1.2935 6 6 3.0854 3.6579 0.0569 7 6 3.6960 5.0357 0.0424 8 8 4.9019 5.1646 0.0398 9 7 2.9018 6.1245 0.0266 10 6 3.4953 7.4638 0.0063 11 6 2.3998 8.4985 -0.0079 12 8 1.2376 8.1514 -0.0013 13 7 2.7115 9.8096 -0.0280 14 6 1.7148 10.7510 -0.0404 15 1 0.6800 10.4419 -0.0337 16 6 2.0361 12.1027 -0.0606 17 7 1.0808 13.0050 -0.0730 18 14 3.8260 12.6372 -0.0715 19 1 4.2978 12.7584 -1.4742 20 1 3.9545 13.9507 0.6093 21 1 4.6485 11.6274 0.6420 22 6 4.1758 2.5794 0.0507 23 6 3.5343 1.1870 -0.0039 24 6 2.2147 3.4396 -1.1722 25 8 2.0573 4.2881 -2.0168 26 6 1.5578 2.0699 -1.2544 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8901 30 1 0.4727 2.1769 1.2251 31 1 1.8448 1.5062 2.1346 32 1 2.8079 3.5530 2.1931 33 1 1.4268 4.2390 1.3070 34 1 1.9373 6.0215 0.0287 35 1 4.1127 7.6010 0.8940 36 1 4.1118 7.5745 -0.8857 37 1 3.6408 10.0872 -0.0336 38 1 1.3051 13.9487 -0.0867 39 1 4.8145 2.7153 -0.8220 40 1 4.7772 2.6672 0.9554 41 1 3.8523 0.6117 0.8655 42 1 3.8524 0.6728 -0.9109 43 1 0.4727 2.1740 -1.2593 44 1 1.8881 1.5488 -2.1529 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157075582.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:59 Heat of formation + Delta-G solvation = -178.809482 kcal Electronic energy + Delta-G solvation = -28411.520829 eV Core-core repulsion = 24327.820812 eV Total energy + Delta-G solvation = -4083.700017 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.156 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.77935 -40.82604 -39.93653 -39.48873 -37.27882 -36.35258 -35.44630 -33.87852 -32.38837 -31.86297 -30.35190 -29.35099 -27.62288 -26.30834 -24.19189 -23.57216 -22.82752 -21.54238 -21.45819 -20.60694 -19.16280 -18.49220 -17.99051 -17.60572 -17.34725 -16.95767 -16.68914 -16.66635 -16.40537 -16.12556 -15.72205 -15.46417 -15.32853 -15.03108 -14.89703 -14.52453 -14.42189 -14.29695 -14.07800 -13.86598 -13.64708 -13.42139 -13.30716 -13.03580 -12.99147 -12.87765 -12.47945 -12.27636 -12.02499 -11.95596 -11.71392 -11.62204 -11.20019 -11.07027 -10.71592 -10.56160 -10.47304 -10.37882 -10.25531 -8.48737 -6.11065 0.68164 1.28013 1.31243 1.33808 1.41514 1.74280 1.85739 2.17810 2.54628 2.79334 2.85923 3.07063 3.35182 3.36876 3.39103 3.59989 3.85647 3.90319 3.96210 4.05097 4.13023 4.19871 4.30047 4.31144 4.34144 4.49301 4.57974 4.60360 4.67018 4.76882 4.93473 5.01019 5.04950 5.08356 5.09486 5.14542 5.21110 5.24154 5.44729 5.83927 6.18995 6.22254 6.32868 6.44843 6.73991 6.96807 7.24589 7.73331 8.67753 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.026856 B = 0.002779 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.349695 B =10072.909911 C =10569.547643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.380 6.380 3 C 0.127 3.873 4 C -0.141 4.141 5 C -0.098 4.098 6 C -0.129 4.129 7 C 0.531 3.469 8 O -0.565 6.565 9 N -0.702 5.702 10 C 0.116 3.884 11 C 0.444 3.556 12 O -0.615 6.615 13 N -0.576 5.576 14 C -0.333 4.333 15 H 0.063 0.937 16 C -0.007 4.007 17 N -0.925 5.925 18 Si 0.959 3.041 19 H -0.258 1.258 20 H -0.271 1.271 21 H -0.232 1.232 22 C -0.080 4.080 23 C -0.102 4.102 24 C 0.374 3.626 25 O -0.473 6.473 26 C -0.186 4.186 27 H 0.099 0.901 28 H 0.056 0.944 29 H 0.049 0.951 30 H 0.084 0.916 31 H 0.102 0.898 32 H 0.099 0.901 33 H 0.071 0.929 34 H 0.408 0.592 35 H 0.112 0.888 36 H 0.099 0.901 37 H 0.392 0.608 38 H 0.282 0.718 39 H 0.067 0.933 40 H 0.096 0.904 41 H 0.099 0.901 42 H 0.085 0.915 43 H 0.120 0.880 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.801 -27.865 3.209 28.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.299 6.299 3 C 0.087 3.913 4 C -0.178 4.178 5 C -0.136 4.136 6 C -0.133 4.133 7 C 0.318 3.682 8 O -0.444 6.444 9 N -0.354 5.354 10 C -0.012 4.012 11 C 0.231 3.769 12 O -0.501 6.501 13 N -0.216 5.216 14 C -0.462 4.462 15 H 0.081 0.919 16 C -0.207 4.207 17 N -0.564 5.564 18 Si 0.779 3.221 19 H -0.182 1.182 20 H -0.195 1.195 21 H -0.155 1.155 22 C -0.118 4.118 23 C -0.139 4.139 24 C 0.250 3.750 25 O -0.346 6.346 26 C -0.223 4.223 27 H 0.118 0.882 28 H 0.075 0.925 29 H 0.068 0.932 30 H 0.103 0.897 31 H 0.120 0.880 32 H 0.117 0.883 33 H 0.089 0.911 34 H 0.246 0.754 35 H 0.130 0.870 36 H 0.117 0.883 37 H 0.228 0.772 38 H 0.092 0.908 39 H 0.086 0.914 40 H 0.114 0.886 41 H 0.118 0.882 42 H 0.103 0.897 43 H 0.138 0.862 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 5.826 -27.467 2.763 28.214 hybrid contribution -0.216 1.463 -0.272 1.504 sum 5.610 -26.003 2.491 26.718 Atomic orbital electron populations 1.23057 0.80088 1.04097 1.01195 1.87974 1.20985 1.26011 1.94919 1.21394 0.94480 0.83165 0.92256 1.22343 1.01851 0.94210 0.99407 1.21818 0.98294 0.98555 0.94918 1.21979 0.99168 0.93069 0.99067 1.20367 0.86560 0.86092 0.75206 1.90666 1.15032 1.87318 1.51366 1.45696 1.11394 1.04711 1.73637 1.20932 0.93836 0.81226 1.05172 1.20461 0.90193 0.83724 0.82493 1.90526 1.22335 1.80762 1.56441 1.41910 1.08519 1.05013 1.66145 1.19029 0.89251 0.86964 1.50934 0.91936 1.26078 1.04379 0.94676 0.95599 1.69781 1.35343 1.02222 1.49067 0.85438 0.76952 0.79623 0.80070 1.18239 1.19536 1.15532 1.21419 0.94736 0.90734 1.04873 1.21558 0.91100 0.95789 1.05501 1.25391 0.76988 0.89017 0.83641 1.90517 1.55152 1.47915 1.41017 1.23210 1.03520 0.93173 1.02372 0.88221 0.92514 0.93227 0.89727 0.87977 0.88256 0.91056 0.75420 0.87021 0.88286 0.77193 0.90832 0.91377 0.88573 0.88200 0.89658 0.86185 0.85973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.10 10.22 113.37 1.16 1.26 16 2 O -0.38 -4.79 10.36 -148.98 -1.54 -6.33 16 3 C 0.13 1.57 0.89 -10.64 -0.01 1.56 16 4 C -0.14 -1.58 4.65 30.96 0.14 -1.43 16 5 C -0.10 -1.58 5.05 31.12 0.16 -1.42 16 6 C -0.13 -2.78 0.70 -52.94 -0.04 -2.81 16 7 C 0.53 16.04 6.23 87.66 0.55 16.59 16 8 O -0.56 -19.42 16.10 -3.04 -0.05 -19.47 16 9 N -0.70 -23.53 4.98 -466.79 -2.32 -25.86 16 10 C 0.12 4.05 6.15 85.63 0.53 4.58 16 11 C 0.44 20.23 7.85 87.66 0.69 20.92 16 12 O -0.61 -33.04 15.24 -3.08 -0.05 -33.09 16 13 N -0.58 -27.27 5.09 -306.98 -1.56 -28.83 16 14 C -0.33 -19.26 10.16 84.04 0.85 -18.40 16 15 H 0.06 4.27 7.39 -2.91 -0.02 4.24 16 16 C -0.01 -0.39 5.50 84.93 0.47 0.07 16 17 N -0.92 -54.81 13.96 21.67 0.30 -54.51 16 18 Si 0.96 38.60 27.74 68.60 1.90 40.50 16 19 H -0.26 -9.96 7.11 99.48 0.71 -9.26 16 20 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 21 H -0.23 -7.96 6.52 99.48 0.65 -7.31 16 22 C -0.08 -1.34 4.37 30.85 0.13 -1.21 16 23 C -0.10 -1.21 5.30 30.69 0.16 -1.05 16 24 C 0.37 8.75 6.18 30.05 0.19 8.93 16 25 O -0.47 -15.47 16.77 -1.43 -0.02 -15.49 16 26 C -0.19 -2.80 4.99 30.55 0.15 -2.65 16 27 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.06 0.39 6.45 -2.39 -0.02 0.38 16 29 H 0.05 0.39 6.45 -2.39 -0.02 0.37 16 30 H 0.08 0.82 6.62 -2.39 -0.02 0.81 16 31 H 0.10 0.87 8.14 -2.38 -0.02 0.85 16 32 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.07 1.30 7.59 -2.38 -0.02 1.29 16 34 H 0.41 14.36 6.74 -92.71 -0.62 13.74 16 35 H 0.11 3.39 8.14 -2.39 -0.02 3.37 16 36 H 0.10 3.26 8.14 -2.39 -0.02 3.24 16 37 H 0.39 15.57 5.76 -92.71 -0.53 15.04 16 38 H 0.28 15.24 8.31 -92.71 -0.77 14.47 16 39 H 0.07 1.32 8.09 -2.39 -0.02 1.30 16 40 H 0.10 1.50 8.14 -2.39 -0.02 1.49 16 41 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.12 1.56 6.65 -2.39 -0.02 1.54 16 44 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -78.82 352.52 1.62 -77.20 By element: Atomic # 1 Polarization: 41.11 SS G_CDS: -0.16 Total: 40.95 kcal Atomic # 6 Polarization: 19.80 SS G_CDS: 5.13 Total: 24.94 kcal Atomic # 7 Polarization: -105.61 SS G_CDS: -3.58 Total: -109.20 kcal Atomic # 8 Polarization: -72.72 SS G_CDS: -1.66 Total: -74.38 kcal Atomic # 14 Polarization: 38.60 SS G_CDS: 1.90 Total: 40.50 kcal Total: -78.82 1.62 -77.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157075582.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.611 kcal (2) G-P(sol) polarization free energy of solvation -78.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds