Wall clock time and date at job start Fri Apr 10 2020 18:32:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86803 * 120.00161 * 2 1 4 4 H 1.48491 * 109.47059 * 269.99718 * 3 2 1 5 5 H 1.48500 * 109.46597 * 29.99985 * 3 2 1 6 6 H 1.48495 * 109.46999 * 149.99602 * 3 2 1 7 7 C 1.38816 * 119.99978 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00239 * 180.02562 * 7 2 1 9 9 N 1.36942 * 119.99908 * 0.02562 * 7 2 1 10 10 C 1.46494 * 119.99744 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.47184 * 174.37090 * 10 9 7 12 12 C 1.53004 * 115.54728 * 294.95418 * 11 10 9 13 13 C 1.53000 * 109.46854 * 279.31669 * 12 11 10 14 14 N 1.46502 * 109.46944 * 175.45740 * 13 12 11 15 15 C 1.34772 * 119.99674 * 180.02562 * 14 13 12 16 16 O 1.21283 * 120.00371 * 0.02562 * 15 14 13 17 17 C 1.50701 * 119.99768 * 179.97438 * 15 14 13 18 18 N 1.46507 * 109.47407 * 180.02562 * 17 15 14 19 19 C 1.47314 * 126.68696 * 270.30600 * 18 17 15 20 20 C 1.51584 * 103.59085 * 180.02562 * 19 18 17 21 21 O 1.21229 * 127.16301 * 179.91765 * 20 19 18 22 22 N 1.34778 * 105.68295 * 359.65173 * 20 19 18 23 23 C 1.33792 * 111.64381 * 0.22422 * 22 20 19 24 24 O 1.21531 * 123.76750 * 179.97438 * 23 22 20 25 25 C 1.53006 * 117.51743 * 80.64827 * 11 10 9 26 26 C 1.52991 * 117.50258 * 149.27675 * 11 10 9 27 27 H 0.96998 * 119.99588 * 359.97438 * 1 2 3 28 28 H 0.97006 * 119.99659 * 359.97438 * 9 7 2 29 29 H 1.09001 * 109.47401 * 54.37254 * 10 9 7 30 30 H 1.08999 * 109.47216 * 294.36875 * 10 9 7 31 31 H 1.09002 * 109.46898 * 159.32316 * 12 11 10 32 32 H 1.08993 * 109.47360 * 39.32285 * 12 11 10 33 33 H 1.09001 * 109.46794 * 55.46189 * 13 12 11 34 34 H 1.08994 * 109.47427 * 295.46450 * 13 12 11 35 35 H 0.96999 * 120.00208 * 0.02562 * 14 13 12 36 36 H 1.09001 * 109.46921 * 60.00516 * 17 15 14 37 37 H 1.09000 * 109.47646 * 300.00138 * 17 15 14 38 38 H 1.08991 * 110.70334 * 61.49329 * 19 18 17 39 39 H 1.09000 * 110.49352 * 298.54331 * 19 18 17 40 40 H 0.96994 * 124.17562 * 180.26393 * 22 20 19 41 41 H 1.08998 * 117.49555 * 214.97517 * 25 11 10 42 42 H 1.08998 * 117.49402 * 359.97438 * 25 11 10 43 43 H 1.09002 * 117.50113 * 359.97438 * 26 11 10 44 44 H 1.09003 * 117.50383 * 144.99954 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0017 11 6 1.0698 -4.8162 0.1429 12 6 0.3070 -4.8754 1.4680 13 6 1.1941 -5.5132 2.5390 14 7 0.5058 -5.4716 3.8315 15 6 1.1011 -5.9798 4.9286 16 8 2.2068 -6.4712 4.8460 17 6 0.3932 -5.9365 6.2584 18 7 1.2431 -6.5463 7.2842 19 6 1.2726 -7.9671 7.6721 20 6 2.3231 -8.0165 8.7638 21 8 2.6877 -8.9912 9.3856 22 7 2.7717 -6.7524 8.8952 23 6 2.1536 -5.9191 8.0504 24 8 2.3883 -4.7285 7.9833 25 6 0.3331 -5.2747 -1.1173 26 6 1.4402 -6.1449 -0.5190 27 1 -0.4849 0.8401 0.0004 28 1 0.3555 -2.3881 0.0005 29 1 2.7575 -3.6718 0.8375 30 1 2.6077 -3.7599 -0.9339 31 1 -0.5959 -5.4727 1.3411 32 1 0.0345 -3.8659 1.7757 33 1 2.1322 -4.9625 2.6090 34 1 1.4003 -6.5492 2.2703 35 1 -0.3784 -5.0783 3.8977 36 1 -0.5448 -6.4873 6.1887 37 1 0.1871 -4.9003 6.5267 38 1 1.5678 -8.5908 6.8283 39 1 0.3019 -8.2774 8.0587 40 1 3.4583 -6.4805 9.5241 41 1 -0.6948 -5.6185 -1.0024 42 1 0.5523 -4.7500 -2.0472 43 1 2.3878 -6.1930 -1.0555 44 1 1.1406 -7.0613 -0.0105 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167468865.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:11 Heat of formation + Delta-G solvation = -38.345953 kcal Electronic energy + Delta-G solvation = -26894.330899 eV Core-core repulsion = 22849.014589 eV Total energy + Delta-G solvation = -4045.316310 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.59437 -39.84686 -38.92088 -38.27889 -36.50643 -35.06989 -34.70434 -33.92441 -30.89100 -30.70010 -29.23366 -27.25327 -25.94077 -23.65978 -22.78420 -22.69880 -22.10167 -21.60443 -20.60780 -18.73690 -18.54102 -17.82669 -17.08418 -17.08160 -16.71473 -16.29969 -16.13331 -15.59511 -15.31398 -14.89529 -14.58354 -14.53653 -14.38661 -14.32873 -14.04699 -13.53640 -13.42570 -13.11367 -12.75339 -12.49110 -12.24336 -11.95150 -11.49192 -11.39709 -11.16455 -10.97033 -10.84384 -10.73494 -10.68434 -10.66038 -10.39989 -10.14303 -9.91920 -9.68954 -9.39765 -9.28841 -9.12255 -8.85180 -6.90592 -5.76520 -3.04240 1.21752 1.71680 2.41576 2.57061 2.64187 3.14305 3.44452 3.50036 3.51513 3.63016 4.02623 4.26357 4.44510 4.58322 4.61890 4.74369 4.81801 4.97928 5.05426 5.11953 5.21622 5.27561 5.49118 5.57508 5.62837 5.64398 5.70375 5.82230 5.87888 6.11525 6.15359 6.20555 6.35464 6.40438 6.43743 6.52525 6.60388 6.74758 6.82880 6.94756 7.34195 7.71166 7.73358 8.04523 8.42874 9.54638 10.12355 10.48145 11.46359 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.013391 B = 0.002552 C = 0.002248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.448503 B =10970.046393 C =12450.411028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.237 4.237 8 H 0.069 0.931 9 N -0.727 5.727 10 C 0.187 3.813 11 C -0.119 4.119 12 C -0.091 4.091 13 C 0.125 3.875 14 N -0.722 5.722 15 C 0.490 3.510 16 O -0.533 6.533 17 C 0.133 3.867 18 N -0.609 5.609 19 C 0.064 3.936 20 C 0.530 3.470 21 O -0.474 6.474 22 N -0.678 5.678 23 C 0.706 3.294 24 O -0.534 6.534 25 C -0.164 4.164 26 C -0.178 4.178 27 H 0.254 0.746 28 H 0.385 0.615 29 H 0.026 0.974 30 H 0.017 0.983 31 H 0.062 0.938 32 H 0.088 0.912 33 H 0.073 0.927 34 H 0.065 0.935 35 H 0.402 0.598 36 H 0.121 0.879 37 H 0.124 0.876 38 H 0.126 0.874 39 H 0.126 0.874 40 H 0.433 0.567 41 H 0.088 0.912 42 H 0.096 0.904 43 H 0.092 0.908 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.204 -19.158 13.624 23.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.368 4.368 8 H 0.087 0.913 9 N -0.371 5.371 10 C 0.060 3.940 11 C -0.120 4.120 12 C -0.128 4.128 13 C 0.002 3.998 14 N -0.374 5.374 15 C 0.273 3.727 16 O -0.409 6.409 17 C 0.007 3.993 18 N -0.348 5.348 19 C -0.062 4.062 20 C 0.316 3.684 21 O -0.344 6.344 22 N -0.348 5.348 23 C 0.407 3.593 24 O -0.406 6.406 25 C -0.201 4.201 26 C -0.215 4.215 27 H 0.064 0.936 28 H 0.218 0.782 29 H 0.044 0.956 30 H 0.034 0.966 31 H 0.081 0.919 32 H 0.107 0.893 33 H 0.091 0.909 34 H 0.083 0.917 35 H 0.237 0.763 36 H 0.139 0.861 37 H 0.142 0.858 38 H 0.144 0.856 39 H 0.143 0.857 40 H 0.275 0.725 41 H 0.107 0.893 42 H 0.114 0.886 43 H 0.110 0.890 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.088 -19.248 13.710 23.832 hybrid contribution 0.096 1.296 0.121 1.305 sum -2.991 -17.951 13.831 22.858 Atomic orbital electron populations 1.69658 1.05057 1.25563 1.58017 1.24711 0.95522 0.97602 1.03120 0.86205 0.78740 0.83892 0.77488 1.21778 1.21781 1.20758 1.19236 0.91032 0.84170 1.42395 0.91286 1.42285 1.05872 0.99634 1.89339 1.20184 0.91917 0.84212 0.97724 1.21565 1.01737 0.95995 0.92718 1.21254 0.96772 1.02353 0.92465 1.21386 0.96536 1.00980 0.80865 1.45994 1.21540 1.61245 1.08655 1.21065 0.86927 0.78624 0.86049 1.90732 1.19474 1.44887 1.85772 1.21184 0.92141 1.01973 0.83969 1.46923 1.41206 1.08343 1.38283 1.22545 1.00804 0.84435 0.98382 1.20778 0.82137 0.82370 0.83097 1.90863 1.60175 1.34913 1.48421 1.44312 1.40668 1.10692 1.39158 1.15761 0.79368 0.84983 0.79185 1.91069 1.66812 1.12118 1.70581 1.22964 0.96426 1.03062 0.97681 1.22971 1.00079 0.94017 1.04465 0.93592 0.78167 0.95583 0.96572 0.91910 0.89347 0.90893 0.91703 0.76334 0.86141 0.85802 0.85607 0.85660 0.72452 0.89309 0.88592 0.88961 0.89291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.84 13.06 55.49 0.72 -27.11 16 2 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 3 Si 0.91 22.53 29.55 -169.99 -5.02 17.50 16 4 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 5 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 6 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 7 C -0.24 -6.61 9.99 -15.06 -0.15 -6.76 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.48 16 9 N -0.73 -17.97 5.30 -59.91 -0.32 -18.29 16 10 C 0.19 3.73 6.10 -4.04 -0.02 3.71 16 11 C -0.12 -1.82 1.52 -154.51 -0.23 -2.05 16 12 C -0.09 -1.21 5.24 -26.73 -0.14 -1.35 16 13 C 0.13 1.61 5.51 -4.04 -0.02 1.58 16 14 N -0.72 -7.40 5.56 -60.29 -0.33 -7.74 16 15 C 0.49 5.43 7.90 -10.99 -0.09 5.34 16 16 O -0.53 -8.26 16.43 5.55 0.09 -8.17 16 17 C 0.13 0.90 6.63 -5.19 -0.03 0.87 16 18 N -0.61 -4.98 2.51 -181.39 -0.45 -5.44 16 19 C 0.06 0.35 7.66 -4.31 -0.03 0.32 16 20 C 0.53 4.18 8.81 -10.55 -0.09 4.08 16 21 O -0.47 -5.00 18.02 5.60 0.10 -4.90 16 22 N -0.68 -5.62 5.70 -15.79 -0.09 -5.71 16 23 C 0.71 7.71 8.68 -88.02 -0.76 6.94 16 24 O -0.53 -8.06 17.71 5.34 0.09 -7.96 16 25 C -0.16 -2.31 9.90 -26.73 -0.26 -2.57 16 26 C -0.18 -2.26 9.57 -26.74 -0.26 -2.52 16 27 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 28 H 0.38 9.90 7.46 -40.82 -0.30 9.59 16 29 H 0.03 0.54 7.69 -51.93 -0.40 0.14 16 30 H 0.02 0.34 8.09 -51.93 -0.42 -0.08 16 31 H 0.06 0.70 7.94 -51.93 -0.41 0.28 16 32 H 0.09 1.40 7.64 -51.93 -0.40 1.01 16 33 H 0.07 1.16 7.69 -51.93 -0.40 0.76 16 34 H 0.06 0.81 7.80 -51.93 -0.41 0.40 16 35 H 0.40 2.96 8.47 -40.82 -0.35 2.61 16 36 H 0.12 0.27 8.14 -51.93 -0.42 -0.15 16 37 H 0.12 0.81 8.03 -51.93 -0.42 0.40 16 38 H 0.13 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.13 0.25 8.14 -51.93 -0.42 -0.17 16 40 H 0.43 2.85 8.96 -40.82 -0.37 2.48 16 41 H 0.09 1.10 8.08 -51.93 -0.42 0.69 16 42 H 0.10 1.47 8.14 -51.93 -0.42 1.05 16 43 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 44 H 0.09 0.98 7.98 -51.93 -0.41 0.56 16 LS Contribution 380.84 15.07 5.74 5.74 Total: -1.00 -38.08 380.84 -8.03 -46.11 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: -6.36 Total: 8.87 kcal Atomic # 6 Polarization: 9.29 SS G_CDS: -2.20 Total: 7.09 kcal Atomic # 7 Polarization: -63.81 SS G_CDS: -0.47 Total: -64.29 kcal Atomic # 8 Polarization: -21.32 SS G_CDS: 0.29 Total: -21.03 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -38.08 -8.03 -46.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167468865.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.767 kcal (2) G-P(sol) polarization free energy of solvation -38.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds