Wall clock time and date at job start Fri Apr 10 2020 18:32:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86803 * 120.00161 * 2 1 4 4 H 1.48491 * 109.47059 * 269.99718 * 3 2 1 5 5 H 1.48500 * 109.46597 * 29.99985 * 3 2 1 6 6 H 1.48495 * 109.46999 * 149.99602 * 3 2 1 7 7 C 1.38816 * 119.99978 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00239 * 180.02562 * 7 2 1 9 9 N 1.36942 * 119.99908 * 0.02562 * 7 2 1 10 10 C 1.46494 * 119.99744 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.47184 * 174.37090 * 10 9 7 12 12 C 1.53004 * 115.54728 * 294.95418 * 11 10 9 13 13 C 1.53000 * 109.46854 * 279.31669 * 12 11 10 14 14 N 1.46502 * 109.46944 * 175.45740 * 13 12 11 15 15 C 1.34772 * 119.99674 * 180.02562 * 14 13 12 16 16 O 1.21283 * 120.00371 * 0.02562 * 15 14 13 17 17 C 1.50701 * 119.99768 * 179.97438 * 15 14 13 18 18 N 1.46507 * 109.47407 * 180.02562 * 17 15 14 19 19 C 1.47314 * 126.68696 * 270.30600 * 18 17 15 20 20 C 1.51584 * 103.59085 * 180.02562 * 19 18 17 21 21 O 1.21229 * 127.16301 * 179.91765 * 20 19 18 22 22 N 1.34778 * 105.68295 * 359.65173 * 20 19 18 23 23 C 1.33792 * 111.64381 * 0.22422 * 22 20 19 24 24 O 1.21531 * 123.76750 * 179.97438 * 23 22 20 25 25 C 1.53006 * 117.51743 * 80.64827 * 11 10 9 26 26 C 1.52991 * 117.50258 * 149.27675 * 11 10 9 27 27 H 0.96998 * 119.99588 * 359.97438 * 1 2 3 28 28 H 0.97006 * 119.99659 * 359.97438 * 9 7 2 29 29 H 1.09001 * 109.47401 * 54.37254 * 10 9 7 30 30 H 1.08999 * 109.47216 * 294.36875 * 10 9 7 31 31 H 1.09002 * 109.46898 * 159.32316 * 12 11 10 32 32 H 1.08993 * 109.47360 * 39.32285 * 12 11 10 33 33 H 1.09001 * 109.46794 * 55.46189 * 13 12 11 34 34 H 1.08994 * 109.47427 * 295.46450 * 13 12 11 35 35 H 0.96999 * 120.00208 * 0.02562 * 14 13 12 36 36 H 1.09001 * 109.46921 * 60.00516 * 17 15 14 37 37 H 1.09000 * 109.47646 * 300.00138 * 17 15 14 38 38 H 1.08991 * 110.70334 * 61.49329 * 19 18 17 39 39 H 1.09000 * 110.49352 * 298.54331 * 19 18 17 40 40 H 0.96994 * 124.17562 * 180.26393 * 22 20 19 41 41 H 1.08998 * 117.49555 * 214.97517 * 25 11 10 42 42 H 1.08998 * 117.49402 * 359.97438 * 25 11 10 43 43 H 1.09002 * 117.50113 * 359.97438 * 26 11 10 44 44 H 1.09003 * 117.50383 * 144.99954 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0017 11 6 1.0698 -4.8162 0.1429 12 6 0.3070 -4.8754 1.4680 13 6 1.1941 -5.5132 2.5390 14 7 0.5058 -5.4716 3.8315 15 6 1.1011 -5.9798 4.9286 16 8 2.2068 -6.4712 4.8460 17 6 0.3932 -5.9365 6.2584 18 7 1.2431 -6.5463 7.2842 19 6 1.2726 -7.9671 7.6721 20 6 2.3231 -8.0165 8.7638 21 8 2.6877 -8.9912 9.3856 22 7 2.7717 -6.7524 8.8952 23 6 2.1536 -5.9191 8.0504 24 8 2.3883 -4.7285 7.9833 25 6 0.3331 -5.2747 -1.1173 26 6 1.4402 -6.1449 -0.5190 27 1 -0.4849 0.8401 0.0004 28 1 0.3555 -2.3881 0.0005 29 1 2.7575 -3.6718 0.8375 30 1 2.6077 -3.7599 -0.9339 31 1 -0.5959 -5.4727 1.3411 32 1 0.0345 -3.8659 1.7757 33 1 2.1322 -4.9625 2.6090 34 1 1.4003 -6.5492 2.2703 35 1 -0.3784 -5.0783 3.8977 36 1 -0.5448 -6.4873 6.1887 37 1 0.1871 -4.9003 6.5267 38 1 1.5678 -8.5908 6.8283 39 1 0.3019 -8.2774 8.0587 40 1 3.4583 -6.4805 9.5241 41 1 -0.6948 -5.6185 -1.0024 42 1 0.5523 -4.7500 -2.0472 43 1 2.3878 -6.1930 -1.0555 44 1 1.1406 -7.0613 -0.0105 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167468865.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:11 Heat of formation + Delta-G solvation = -69.096537 kcal Electronic energy + Delta-G solvation = -26895.664344 eV Core-core repulsion = 22849.014589 eV Total energy + Delta-G solvation = -4046.649755 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.28738 -40.74918 -39.74703 -39.45248 -37.33728 -36.12982 -35.72912 -35.46073 -32.78189 -31.70114 -29.96201 -28.04404 -27.65443 -24.75822 -24.56657 -23.39600 -23.08478 -22.54107 -21.44981 -19.98777 -19.31229 -19.05362 -18.55445 -17.80386 -17.52186 -17.12770 -16.96503 -16.74427 -16.49896 -16.23839 -15.73782 -15.51416 -15.38394 -15.18253 -15.09192 -14.86111 -14.73786 -14.23036 -13.99080 -13.83291 -13.19443 -13.12782 -12.98922 -12.80239 -12.52695 -12.26192 -12.20038 -12.14267 -11.93514 -11.82782 -11.52043 -11.46746 -11.31775 -11.07987 -10.89493 -10.57345 -10.08034 -10.04231 -8.97642 -7.95722 -5.22779 0.54631 1.08365 1.45868 1.46646 1.55159 1.58873 1.86236 1.99092 2.36087 2.53722 2.92084 3.04335 3.37221 3.71362 3.77067 3.86564 3.88768 4.00551 4.11930 4.26308 4.28507 4.33498 4.39754 4.44422 4.51407 4.67617 4.68488 4.85893 4.95365 4.98101 5.01595 5.10210 5.17098 5.20858 5.30295 5.36147 5.41469 5.46732 5.48583 5.90888 6.27353 6.30447 6.55511 6.97734 7.24006 7.34636 8.10532 8.37009 9.27379 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.013391 B = 0.002552 C = 0.002248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.448503 B =10970.046393 C =12450.411028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.963 5.963 2 C -0.069 4.069 3 Si 0.968 3.032 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.276 1.276 7 C -0.246 4.246 8 H 0.067 0.933 9 N -0.734 5.734 10 C 0.187 3.813 11 C -0.140 4.140 12 C -0.076 4.076 13 C 0.135 3.865 14 N -0.714 5.714 15 C 0.484 3.516 16 O -0.583 6.583 17 C 0.135 3.865 18 N -0.605 5.605 19 C 0.071 3.929 20 C 0.532 3.468 21 O -0.503 6.503 22 N -0.675 5.675 23 C 0.699 3.301 24 O -0.586 6.586 25 C -0.163 4.163 26 C -0.151 4.151 27 H 0.252 0.748 28 H 0.378 0.622 29 H 0.013 0.987 30 H 0.010 0.990 31 H 0.096 0.904 32 H 0.058 0.942 33 H 0.032 0.968 34 H 0.075 0.925 35 H 0.418 0.582 36 H 0.181 0.819 37 H 0.128 0.872 38 H 0.136 0.864 39 H 0.174 0.826 40 H 0.437 0.563 41 H 0.112 0.888 42 H 0.077 0.923 43 H 0.091 0.909 44 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.872 -21.081 13.864 25.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.614 5.614 2 C -0.262 4.262 3 Si 0.797 3.203 4 H -0.213 1.213 5 H -0.218 1.218 6 H -0.201 1.201 7 C -0.378 4.378 8 H 0.085 0.915 9 N -0.377 5.377 10 C 0.060 3.940 11 C -0.141 4.141 12 C -0.114 4.114 13 C 0.011 3.989 14 N -0.366 5.366 15 C 0.270 3.730 16 O -0.463 6.463 17 C 0.011 3.989 18 N -0.342 5.342 19 C -0.053 4.053 20 C 0.320 3.680 21 O -0.375 6.375 22 N -0.344 5.344 23 C 0.400 3.600 24 O -0.462 6.462 25 C -0.200 4.200 26 C -0.188 4.188 27 H 0.061 0.939 28 H 0.210 0.790 29 H 0.031 0.969 30 H 0.028 0.972 31 H 0.114 0.886 32 H 0.077 0.923 33 H 0.051 0.949 34 H 0.093 0.907 35 H 0.256 0.744 36 H 0.198 0.802 37 H 0.146 0.854 38 H 0.154 0.846 39 H 0.191 0.809 40 H 0.279 0.721 41 H 0.130 0.870 42 H 0.095 0.905 43 H 0.110 0.890 44 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -4.776 -21.214 13.944 25.831 hybrid contribution 0.675 1.842 0.011 1.962 sum -4.101 -19.372 13.954 24.224 Atomic orbital electron populations 1.69788 1.06248 1.26009 1.59354 1.25453 0.96418 1.00645 1.03702 0.85230 0.77678 0.79969 0.77442 1.21342 1.21842 1.20098 1.19570 0.91231 0.85656 1.41385 0.91525 1.42407 1.05661 1.00505 1.89090 1.20232 0.92784 0.84386 0.96569 1.21420 1.02220 0.95913 0.94588 1.21105 0.97681 1.01239 0.91368 1.21121 0.95026 1.00681 0.82092 1.45898 1.22058 1.60889 1.07798 1.21886 0.86397 0.77296 0.87378 1.90714 1.21725 1.47205 1.86625 1.21487 0.93149 1.03447 0.80824 1.47119 1.40159 1.09393 1.37501 1.22816 1.02093 0.82774 0.97642 1.21166 0.82156 0.81481 0.83170 1.90856 1.61290 1.35533 1.49789 1.44309 1.40488 1.10852 1.38790 1.16033 0.79705 0.84575 0.79666 1.91027 1.68554 1.14381 1.72285 1.23012 0.98078 1.03013 0.95932 1.23055 0.99609 0.93483 1.02668 0.93921 0.78952 0.96867 0.97231 0.88556 0.92341 0.94941 0.90703 0.74445 0.80232 0.85434 0.84633 0.80922 0.72051 0.86999 0.90469 0.89004 0.86397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.19 13.06 21.65 0.28 -57.90 16 2 C -0.07 -4.01 5.50 84.86 0.47 -3.55 16 3 Si 0.97 46.79 29.55 68.60 2.03 48.81 16 4 H -0.29 -13.57 7.11 99.48 0.71 -12.87 16 5 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 6 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 7 C -0.25 -14.01 9.99 84.03 0.84 -13.17 16 8 H 0.07 3.73 7.83 -2.91 -0.02 3.71 16 9 N -0.73 -37.15 5.30 -343.45 -1.82 -38.97 16 10 C 0.19 7.62 6.10 86.38 0.53 8.15 16 11 C -0.14 -4.17 1.52 -52.18 -0.08 -4.25 16 12 C -0.08 -1.93 5.24 30.60 0.16 -1.77 16 13 C 0.13 3.34 5.51 86.38 0.48 3.81 16 14 N -0.71 -13.41 5.56 -463.06 -2.57 -15.98 16 15 C 0.48 9.95 7.90 87.66 0.69 10.64 16 16 O -0.58 -17.81 16.43 -3.04 -0.05 -17.86 16 17 C 0.14 1.43 6.63 85.63 0.57 2.00 16 18 N -0.60 -8.52 2.51 -846.23 -2.12 -10.64 16 19 C 0.07 0.54 7.66 85.76 0.66 1.20 16 20 C 0.53 7.65 8.81 87.94 0.77 8.42 16 21 O -0.50 -10.15 18.02 -2.87 -0.05 -10.20 16 22 N -0.68 -10.98 5.70 -441.12 -2.52 -13.49 16 23 C 0.70 14.97 8.68 179.44 1.56 16.53 16 24 O -0.59 -18.18 17.71 -3.81 -0.07 -18.25 16 25 C -0.16 -4.27 9.90 30.59 0.30 -3.97 16 26 C -0.15 -3.46 9.57 30.59 0.29 -3.17 16 27 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 28 H 0.38 19.91 7.46 -92.70 -0.69 19.21 16 29 H 0.01 0.58 7.69 -2.39 -0.02 0.56 16 30 H 0.01 0.41 8.09 -2.39 -0.02 0.39 16 31 H 0.10 1.81 7.94 -2.39 -0.02 1.79 16 32 H 0.06 1.85 7.64 -2.39 -0.02 1.83 16 33 H 0.03 1.06 7.69 -2.39 -0.02 1.05 16 34 H 0.07 1.71 7.80 -2.39 -0.02 1.69 16 35 H 0.42 5.13 8.47 -92.71 -0.79 4.34 16 36 H 0.18 -0.22 8.14 -2.39 -0.02 -0.24 16 37 H 0.13 1.38 8.03 -2.39 -0.02 1.36 16 38 H 0.14 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.17 -0.21 8.14 -2.39 -0.02 -0.23 16 40 H 0.44 5.95 8.96 -92.71 -0.83 5.12 16 41 H 0.11 2.42 8.08 -2.39 -0.02 2.40 16 42 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 43 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 44 H 0.12 2.09 7.98 -2.39 -0.02 2.07 16 Total: -1.00 -86.78 380.84 -0.90 -87.68 By element: Atomic # 1 Polarization: 27.17 SS G_CDS: -1.25 Total: 25.92 kcal Atomic # 6 Polarization: 13.65 SS G_CDS: 7.23 Total: 20.88 kcal Atomic # 7 Polarization: -128.25 SS G_CDS: -8.75 Total: -137.00 kcal Atomic # 8 Polarization: -46.14 SS G_CDS: -0.17 Total: -46.30 kcal Atomic # 14 Polarization: 46.79 SS G_CDS: 2.03 Total: 48.81 kcal Total: -86.78 -0.90 -87.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167468865.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.587 kcal (2) G-P(sol) polarization free energy of solvation -86.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds