Wall clock time and date at job start Fri Apr 10 2020 18:32:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.29933 * 125.37805 * 2 1 4 4 C 1.36067 * 108.47372 * 179.97438 * 3 2 1 5 5 C 1.47425 * 126.44626 * 180.02562 * 4 3 2 6 6 O 1.21613 * 120.00006 * 180.02562 * 5 4 3 7 7 N 1.34777 * 119.99743 * 0.02562 * 5 4 3 8 8 C 1.46499 * 119.99665 * 179.72398 * 7 5 4 9 9 C 1.53004 * 109.47198 * 180.27868 * 8 7 5 10 10 C 1.52997 * 109.47000 * 179.97438 * 9 8 7 11 11 N 1.46904 * 109.46983 * 179.97438 * 10 9 8 12 12 C 1.46903 * 111.00204 * 180.02562 * 11 10 9 13 13 C 1.50699 * 109.46998 * 179.97438 * 12 11 10 14 14 O 1.21295 * 120.00000 * 0.02562 * 13 12 11 15 15 N 1.34775 * 119.99798 * 179.97438 * 13 12 11 16 16 C 1.37094 * 120.00027 * 180.02562 * 15 13 12 17 17 H 1.07996 * 120.00216 * 0.02562 * 16 15 13 18 18 C 1.38956 * 120.00110 * 180.02562 * 16 15 13 19 19 N 1.31410 * 120.00155 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 119.99952 * 0.02562 * 18 16 15 21 21 H 1.48502 * 109.47116 * 89.99401 * 20 18 16 22 22 H 1.48493 * 109.47204 * 209.99820 * 20 18 16 23 23 H 1.48502 * 109.46930 * 329.99710 * 20 18 16 24 24 C 1.36084 * 107.10479 * 0.26712 * 4 3 2 25 25 C 1.50708 * 126.52553 * 179.73899 * 24 4 3 26 26 O 1.34057 * 125.37580 * 179.97438 * 2 1 3 27 27 H 1.09001 * 109.47001 * 89.99783 * 1 2 3 28 28 H 1.08995 * 109.47215 * 209.99768 * 1 2 3 29 29 H 1.08991 * 109.46906 * 329.99641 * 1 2 3 30 30 H 0.97001 * 120.00485 * 0.02562 * 7 5 4 31 31 H 1.09009 * 109.47454 * 300.27637 * 8 7 5 32 32 H 1.08998 * 109.47492 * 60.27932 * 8 7 5 33 33 H 1.08995 * 109.46638 * 300.00121 * 9 8 7 34 34 H 1.09006 * 109.47139 * 60.00254 * 9 8 7 35 35 H 1.08995 * 109.47672 * 299.99669 * 10 9 8 36 36 H 1.09007 * 109.47288 * 60.00489 * 10 9 8 37 37 H 1.00901 * 110.99709 * 56.04986 * 11 10 9 38 38 H 1.08999 * 109.46830 * 300.00221 * 12 11 10 39 39 H 1.09000 * 109.46616 * 60.00377 * 12 11 10 40 40 H 0.97003 * 119.99741 * 0.02562 * 15 13 12 41 41 H 0.96994 * 120.00260 * 180.02562 * 19 18 16 42 42 H 1.08994 * 109.46849 * 89.99572 * 25 24 4 43 43 H 1.08994 * 109.46966 * 209.99933 * 25 24 4 44 44 H 1.08999 * 109.46502 * 329.99791 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2593 1.0594 0.0000 4 6 3.5612 0.6638 0.0006 5 6 4.7440 1.5438 0.0013 6 8 5.8605 1.0617 0.0013 7 7 4.5879 2.8825 0.0020 8 6 5.7632 3.7569 0.0088 9 6 5.3114 5.2187 0.0152 10 6 6.5389 6.1319 0.0230 11 7 6.1050 7.5354 0.0284 12 6 7.2598 8.4434 0.0354 13 6 6.7764 9.8708 0.0402 14 8 5.5869 10.1083 0.0385 15 7 7.6658 10.8834 0.0474 16 6 7.2261 12.1819 0.0523 17 1 6.1670 12.3934 0.0508 18 6 8.1430 13.2259 0.0592 19 7 7.7216 14.4706 0.0634 20 14 9.9749 12.8601 0.0611 21 1 10.4630 12.7699 -1.3385 22 1 10.6963 13.9488 0.7678 23 1 10.2214 11.5708 0.7554 24 6 3.5660 -0.6971 -0.0051 25 6 4.7802 -1.5898 -0.0123 26 8 2.2832 -1.0931 0.0005 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8899 0.5139 30 1 3.6973 3.2670 0.0024 31 1 6.3596 3.5572 0.8992 32 1 6.3634 3.5660 -0.8808 33 1 4.7150 5.4184 -0.8751 34 1 4.7113 5.4097 0.9049 35 1 7.1348 5.9321 0.9134 36 1 7.1394 5.9411 -0.8666 37 1 5.4934 7.7217 0.8090 38 1 7.8609 8.2599 0.9259 39 1 7.8650 8.2682 -0.8541 40 1 8.6170 10.6934 0.0491 41 1 8.3616 15.1994 0.0679 42 1 5.0758 -1.8092 1.0136 43 1 4.5442 -2.5198 -0.5293 44 1 5.5986 -1.0857 -0.5264 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169076191.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:19 Heat of formation + Delta-G solvation = -55.099862 kcal Electronic energy + Delta-G solvation = -25475.096984 eV Core-core repulsion = 21429.054170 eV Total energy + Delta-G solvation = -4046.042814 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.89924 -39.83021 -38.49773 -36.65764 -35.40185 -34.92413 -33.88780 -33.52061 -31.73400 -31.42720 -30.54308 -27.71913 -26.53243 -24.89997 -23.70099 -22.89130 -21.83474 -21.66186 -20.61013 -19.36682 -18.42785 -18.15282 -17.52997 -16.53652 -16.23299 -16.18651 -15.83323 -15.43602 -14.92149 -14.71130 -14.65817 -14.41057 -14.16554 -13.97285 -13.85275 -13.49875 -13.24649 -13.21161 -13.18277 -12.89953 -12.79425 -12.36438 -12.16158 -11.92420 -11.70732 -11.68700 -11.52729 -11.23498 -11.18095 -10.99949 -10.58824 -10.44089 -9.96890 -9.56604 -9.47084 -9.13235 -8.59297 -8.19206 -8.14101 -6.30400 -3.81848 0.64801 1.55361 1.99454 2.75524 2.94056 3.03268 3.07878 3.15822 3.41500 3.74857 4.07349 4.11708 4.12623 4.34162 4.59020 4.75300 4.79854 4.81746 4.84476 4.93459 5.00227 5.01654 5.04142 5.17337 5.22856 5.36017 5.40656 5.44452 5.55513 5.56611 5.63822 5.67455 5.81446 5.91254 5.95742 6.01054 6.13478 6.93815 7.08074 7.25067 7.56366 7.59290 7.82571 8.15263 8.60588 8.95686 9.43200 9.83528 10.82725 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.031083 B = 0.001548 C = 0.001478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.604150 B =18081.458747 C =18938.380461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.194 3.806 3 N -0.459 5.459 4 C -0.078 4.078 5 C 0.603 3.397 6 O -0.536 6.536 7 N -0.710 5.710 8 C 0.121 3.879 9 C -0.130 4.130 10 C 0.063 3.937 11 N -0.670 5.670 12 C 0.048 3.952 13 C 0.450 3.550 14 O -0.565 6.565 15 N -0.591 5.591 16 C -0.306 4.306 17 H 0.120 0.880 18 C 0.041 3.959 19 N -0.881 5.881 20 Si 0.880 3.120 21 H -0.270 1.270 22 H -0.277 1.277 23 H -0.270 1.270 24 C 0.041 3.959 25 C -0.077 4.077 26 O -0.198 6.198 27 H 0.096 0.904 28 H 0.090 0.910 29 H 0.104 0.896 30 H 0.411 0.589 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.070 0.930 35 H 0.030 0.970 36 H 0.074 0.926 37 H 0.351 0.649 38 H 0.045 0.955 39 H 0.088 0.912 40 H 0.371 0.629 41 H 0.273 0.727 42 H 0.092 0.908 43 H 0.081 0.919 44 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.748 -34.299 0.711 35.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.014 4.014 3 N -0.190 5.190 4 C -0.198 4.198 5 C 0.389 3.611 6 O -0.414 6.414 7 N -0.361 5.361 8 C -0.003 4.003 9 C -0.168 4.168 10 C -0.067 4.067 11 N -0.302 5.302 12 C -0.085 4.085 13 C 0.235 3.765 14 O -0.447 6.447 15 N -0.230 5.230 16 C -0.434 4.434 17 H 0.137 0.863 18 C -0.162 4.162 19 N -0.521 5.521 20 Si 0.707 3.293 21 H -0.196 1.196 22 H -0.202 1.202 23 H -0.195 1.195 24 C -0.015 4.015 25 C -0.133 4.133 26 O -0.085 6.085 27 H 0.114 0.886 28 H 0.109 0.891 29 H 0.123 0.877 30 H 0.246 0.754 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.101 0.899 34 H 0.089 0.911 35 H 0.048 0.952 36 H 0.093 0.907 37 H 0.170 0.830 38 H 0.063 0.937 39 H 0.106 0.894 40 H 0.203 0.797 41 H 0.084 0.916 42 H 0.111 0.889 43 H 0.099 0.901 44 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -8.010 -33.562 0.030 34.505 hybrid contribution 1.585 -0.573 0.924 1.922 sum -6.426 -34.136 0.954 34.748 Atomic orbital electron populations 1.20334 0.80675 1.05479 1.05058 1.26246 0.96532 0.78150 1.00518 1.70741 1.00639 1.30004 1.17597 1.21458 0.92191 0.92294 1.13830 1.16669 0.86154 0.81860 0.76427 1.90789 1.24286 1.75266 1.51065 1.45787 1.11103 1.05295 1.73951 1.21391 0.87372 0.88769 1.02746 1.21748 0.99061 0.92066 1.03972 1.21825 0.95850 0.88175 1.00830 1.60035 1.17404 1.01219 1.51561 1.21705 0.92925 0.92487 1.01357 1.19717 0.87014 0.85768 0.83971 1.90564 1.15978 1.84424 1.53706 1.42205 1.07077 1.06629 1.67102 1.19439 0.96769 0.79143 1.48076 0.86281 1.25041 0.98512 0.94965 0.97642 1.69621 1.34911 0.98222 1.49388 0.86662 0.85303 0.78446 0.78910 1.19592 1.20196 1.19532 1.23755 0.83909 0.94514 0.99348 1.20615 0.90158 0.97760 1.04772 1.84337 1.16378 1.38002 1.69792 0.88602 0.89120 0.87708 0.75351 0.91162 0.90915 0.89927 0.91087 0.95170 0.90708 0.82974 0.93694 0.89401 0.79669 0.91620 0.88922 0.90061 0.86871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.18 10.51 36.01 0.38 0.20 16 2 C 0.19 1.52 8.30 -13.08 -0.11 1.42 16 3 N -0.46 -4.62 11.06 -7.65 -0.08 -4.71 16 4 C -0.08 -0.83 6.99 -83.02 -0.58 -1.41 16 5 C 0.60 6.94 7.81 -12.52 -0.10 6.85 16 6 O -0.54 -7.09 14.81 5.27 0.08 -7.01 16 7 N -0.71 -7.06 5.55 -61.38 -0.34 -7.40 16 8 C 0.12 1.13 5.67 -4.04 -0.02 1.11 16 9 C -0.13 -1.24 5.59 -26.73 -0.15 -1.39 16 10 C 0.06 0.70 5.69 -3.82 -0.02 0.68 16 11 N -0.67 -10.23 6.12 -115.05 -0.70 -10.93 16 12 C 0.05 0.80 6.17 -4.97 -0.03 0.76 16 13 C 0.45 10.28 7.82 -10.99 -0.09 10.19 16 14 O -0.56 -15.28 15.78 5.54 0.09 -15.20 16 15 N -0.59 -14.17 5.09 -10.96 -0.06 -14.22 16 16 C -0.31 -8.71 10.16 -14.93 -0.15 -8.86 16 17 H 0.12 3.88 7.39 -52.49 -0.39 3.49 16 18 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 19 N -0.88 -25.86 13.96 55.50 0.77 -25.08 16 20 Si 0.88 19.45 27.74 -169.99 -4.71 14.73 16 21 H -0.27 -5.87 7.11 56.52 0.40 -5.46 16 22 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 23 H -0.27 -5.43 6.52 56.52 0.37 -5.06 16 24 C 0.04 0.38 7.44 -35.08 -0.26 0.11 16 25 C -0.08 -0.49 9.87 36.01 0.36 -0.13 16 26 O -0.20 -1.68 10.73 6.50 0.07 -1.61 16 27 H 0.10 0.18 8.14 -51.93 -0.42 -0.24 16 28 H 0.09 0.13 8.14 -51.93 -0.42 -0.30 16 29 H 0.10 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.41 3.71 8.20 -40.82 -0.33 3.38 16 31 H 0.07 0.67 8.14 -51.92 -0.42 0.25 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.35 5.52 8.43 -39.29 -0.33 5.19 16 38 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 40 H 0.37 7.78 5.76 -40.82 -0.24 7.55 16 41 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 42 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 44 H 0.11 0.85 6.49 -51.93 -0.34 0.51 16 LS Contribution 379.51 15.07 5.72 5.72 Total: -1.00 -36.03 379.51 -6.33 -42.37 By element: Atomic # 1 Polarization: 19.06 SS G_CDS: -6.29 Total: 12.77 kcal Atomic # 6 Polarization: 11.44 SS G_CDS: -0.87 Total: 10.56 kcal Atomic # 7 Polarization: -61.93 SS G_CDS: -0.41 Total: -62.34 kcal Atomic # 8 Polarization: -24.05 SS G_CDS: 0.24 Total: -23.81 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -4.71 Total: 14.73 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -36.03 -6.33 -42.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169076191.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.732 kcal (2) G-P(sol) polarization free energy of solvation -36.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds