Wall clock time and date at job start Fri Apr 10 2020 18:32:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.29933 * 125.37805 * 2 1 4 4 C 1.36067 * 108.47372 * 179.97438 * 3 2 1 5 5 C 1.47425 * 126.44626 * 180.02562 * 4 3 2 6 6 O 1.21613 * 120.00006 * 180.02562 * 5 4 3 7 7 N 1.34777 * 119.99743 * 0.02562 * 5 4 3 8 8 C 1.46499 * 119.99665 * 179.72398 * 7 5 4 9 9 C 1.53004 * 109.47198 * 180.27868 * 8 7 5 10 10 C 1.52997 * 109.47000 * 179.97438 * 9 8 7 11 11 N 1.46904 * 109.46983 * 179.97438 * 10 9 8 12 12 C 1.46903 * 111.00204 * 180.02562 * 11 10 9 13 13 C 1.50699 * 109.46998 * 179.97438 * 12 11 10 14 14 O 1.21295 * 120.00000 * 0.02562 * 13 12 11 15 15 N 1.34775 * 119.99798 * 179.97438 * 13 12 11 16 16 C 1.37094 * 120.00027 * 180.02562 * 15 13 12 17 17 H 1.07996 * 120.00216 * 0.02562 * 16 15 13 18 18 C 1.38956 * 120.00110 * 180.02562 * 16 15 13 19 19 N 1.31410 * 120.00155 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 119.99952 * 0.02562 * 18 16 15 21 21 H 1.48502 * 109.47116 * 89.99401 * 20 18 16 22 22 H 1.48493 * 109.47204 * 209.99820 * 20 18 16 23 23 H 1.48502 * 109.46930 * 329.99710 * 20 18 16 24 24 C 1.36084 * 107.10479 * 0.26712 * 4 3 2 25 25 C 1.50708 * 126.52553 * 179.73899 * 24 4 3 26 26 O 1.34057 * 125.37580 * 179.97438 * 2 1 3 27 27 H 1.09001 * 109.47001 * 89.99783 * 1 2 3 28 28 H 1.08995 * 109.47215 * 209.99768 * 1 2 3 29 29 H 1.08991 * 109.46906 * 329.99641 * 1 2 3 30 30 H 0.97001 * 120.00485 * 0.02562 * 7 5 4 31 31 H 1.09009 * 109.47454 * 300.27637 * 8 7 5 32 32 H 1.08998 * 109.47492 * 60.27932 * 8 7 5 33 33 H 1.08995 * 109.46638 * 300.00121 * 9 8 7 34 34 H 1.09006 * 109.47139 * 60.00254 * 9 8 7 35 35 H 1.08995 * 109.47672 * 299.99669 * 10 9 8 36 36 H 1.09007 * 109.47288 * 60.00489 * 10 9 8 37 37 H 1.00901 * 110.99709 * 56.04986 * 11 10 9 38 38 H 1.08999 * 109.46830 * 300.00221 * 12 11 10 39 39 H 1.09000 * 109.46616 * 60.00377 * 12 11 10 40 40 H 0.97003 * 119.99741 * 0.02562 * 15 13 12 41 41 H 0.96994 * 120.00260 * 180.02562 * 19 18 16 42 42 H 1.08994 * 109.46849 * 89.99572 * 25 24 4 43 43 H 1.08994 * 109.46966 * 209.99933 * 25 24 4 44 44 H 1.08999 * 109.46502 * 329.99791 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2593 1.0594 0.0000 4 6 3.5612 0.6638 0.0006 5 6 4.7440 1.5438 0.0013 6 8 5.8605 1.0617 0.0013 7 7 4.5879 2.8825 0.0020 8 6 5.7632 3.7569 0.0088 9 6 5.3114 5.2187 0.0152 10 6 6.5389 6.1319 0.0230 11 7 6.1050 7.5354 0.0284 12 6 7.2598 8.4434 0.0354 13 6 6.7764 9.8708 0.0402 14 8 5.5869 10.1083 0.0385 15 7 7.6658 10.8834 0.0474 16 6 7.2261 12.1819 0.0523 17 1 6.1670 12.3934 0.0508 18 6 8.1430 13.2259 0.0592 19 7 7.7216 14.4706 0.0634 20 14 9.9749 12.8601 0.0611 21 1 10.4630 12.7699 -1.3385 22 1 10.6963 13.9488 0.7678 23 1 10.2214 11.5708 0.7554 24 6 3.5660 -0.6971 -0.0051 25 6 4.7802 -1.5898 -0.0123 26 8 2.2832 -1.0931 0.0005 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8899 0.5139 30 1 3.6973 3.2670 0.0024 31 1 6.3596 3.5572 0.8992 32 1 6.3634 3.5660 -0.8808 33 1 4.7150 5.4184 -0.8751 34 1 4.7113 5.4097 0.9049 35 1 7.1348 5.9321 0.9134 36 1 7.1394 5.9411 -0.8666 37 1 5.4934 7.7217 0.8090 38 1 7.8609 8.2599 0.9259 39 1 7.8650 8.2682 -0.8541 40 1 8.6170 10.6934 0.0491 41 1 8.3616 15.1994 0.0679 42 1 5.0758 -1.8092 1.0136 43 1 4.5442 -2.5198 -0.5293 44 1 5.5986 -1.0857 -0.5264 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169076191.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:19 Heat of formation + Delta-G solvation = -87.423933 kcal Electronic energy + Delta-G solvation = -25476.498661 eV Core-core repulsion = 21429.054170 eV Total energy + Delta-G solvation = -4047.444491 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -44.53393 -40.67563 -40.29552 -37.69771 -36.21981 -36.02083 -35.65861 -34.07641 -33.75694 -32.46838 -30.96092 -28.93297 -27.48098 -26.22660 -24.81117 -23.81001 -22.64582 -22.36976 -21.40597 -21.23810 -20.25426 -18.99555 -18.16697 -17.84291 -17.29724 -17.04566 -16.86453 -16.77541 -16.42949 -15.75417 -15.54229 -15.43735 -15.17790 -14.89873 -14.86126 -14.44374 -14.38062 -14.30021 -14.15886 -13.60036 -13.53703 -13.42581 -13.24767 -13.20086 -12.89581 -12.70991 -12.45589 -12.40602 -12.37790 -11.97419 -11.92021 -11.86312 -11.51367 -11.28379 -10.44726 -10.27009 -10.24932 -9.78791 -9.32929 -8.41338 -6.02450 -0.03574 0.89181 1.30773 1.36363 1.41833 1.45143 1.95433 1.99725 2.13920 2.23376 2.73438 2.87239 3.14959 3.40838 3.53570 3.65790 3.98162 4.10409 4.13143 4.16862 4.20921 4.30025 4.44579 4.54411 4.56036 4.56854 4.64513 4.64799 4.67558 4.74824 4.78479 4.88377 5.04588 5.14805 5.18608 5.21568 5.35121 5.52654 5.90374 6.04808 6.22628 6.38865 6.52513 6.59750 6.87866 7.00606 7.39618 7.96247 8.76297 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.031083 B = 0.001548 C = 0.001478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.604150 B =18081.458747 C =18938.380461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.198 3.802 3 N -0.486 5.486 4 C -0.107 4.107 5 C 0.599 3.401 6 O -0.560 6.560 7 N -0.706 5.706 8 C 0.127 3.873 9 C -0.119 4.119 10 C 0.066 3.934 11 N -0.690 5.690 12 C 0.062 3.938 13 C 0.447 3.553 14 O -0.615 6.615 15 N -0.590 5.590 16 C -0.331 4.331 17 H 0.055 0.945 18 C -0.015 4.015 19 N -0.934 5.934 20 Si 0.966 3.034 21 H -0.257 1.257 22 H -0.275 1.275 23 H -0.231 1.231 24 C 0.041 3.959 25 C -0.074 4.074 26 O -0.199 6.199 27 H 0.112 0.888 28 H 0.112 0.888 29 H 0.111 0.889 30 H 0.414 0.586 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.047 0.953 36 H 0.084 0.916 37 H 0.345 0.655 38 H 0.078 0.922 39 H 0.115 0.885 40 H 0.390 0.610 41 H 0.279 0.721 42 H 0.104 0.896 43 H 0.104 0.896 44 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.866 -37.124 0.859 37.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.011 4.011 3 N -0.217 5.217 4 C -0.226 4.226 5 C 0.386 3.614 6 O -0.440 6.440 7 N -0.357 5.357 8 C 0.004 3.996 9 C -0.157 4.157 10 C -0.063 4.063 11 N -0.322 5.322 12 C -0.070 4.070 13 C 0.235 3.765 14 O -0.500 6.500 15 N -0.232 5.232 16 C -0.460 4.460 17 H 0.073 0.927 18 C -0.213 4.213 19 N -0.575 5.575 20 Si 0.786 3.214 21 H -0.182 1.182 22 H -0.200 1.200 23 H -0.154 1.154 24 C -0.016 4.016 25 C -0.130 4.130 26 O -0.087 6.087 27 H 0.130 0.870 28 H 0.130 0.870 29 H 0.130 0.870 30 H 0.251 0.749 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.066 0.934 36 H 0.103 0.897 37 H 0.163 0.837 38 H 0.096 0.904 39 H 0.133 0.867 40 H 0.226 0.774 41 H 0.089 0.911 42 H 0.122 0.878 43 H 0.123 0.877 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -6.132 -36.408 0.176 36.921 hybrid contribution 0.791 0.286 0.869 1.210 sum -5.340 -36.121 1.045 36.529 Atomic orbital electron populations 1.20626 0.77520 1.06849 1.06486 1.27227 0.97980 0.77492 0.98407 1.70722 1.00636 1.31122 1.19201 1.21493 0.92356 0.92984 1.15745 1.16853 0.86220 0.82272 0.76100 1.90763 1.25113 1.75702 1.52388 1.45786 1.11500 1.05045 1.73350 1.21329 0.87129 0.88379 1.02779 1.21607 0.98516 0.91825 1.03741 1.21887 0.96557 0.85792 1.02091 1.60035 1.17342 1.03131 1.51720 1.21636 0.93579 0.87710 1.04124 1.21031 0.86221 0.88166 0.81092 1.90542 1.18494 1.85784 1.55164 1.42030 1.08301 1.05138 1.67751 1.19022 0.94444 0.82079 1.50476 0.92714 1.26129 1.05225 0.93998 0.95998 1.69803 1.37618 0.99816 1.50231 0.85349 0.76112 0.80025 0.79934 1.18183 1.20010 1.15384 1.24199 0.84758 0.94478 0.98198 1.20686 0.88694 0.98070 1.05585 1.84365 1.16204 1.38240 1.69850 0.86972 0.86968 0.87040 0.74942 0.90990 0.90974 0.90693 0.90860 0.93434 0.89711 0.83660 0.90393 0.86695 0.77413 0.91130 0.87815 0.87740 0.88136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.24 10.51 71.24 0.75 0.50 16 2 C 0.20 2.89 8.30 88.39 0.73 3.62 16 3 N -0.49 -9.63 11.06 -293.02 -3.24 -12.87 16 4 C -0.11 -2.29 6.99 40.41 0.28 -2.00 16 5 C 0.60 13.79 7.81 86.66 0.68 14.47 16 6 O -0.56 -14.79 14.81 -4.07 -0.06 -14.85 16 7 N -0.71 -13.77 5.55 -466.35 -2.59 -16.36 16 8 C 0.13 2.22 5.67 86.38 0.49 2.71 16 9 C -0.12 -2.08 5.59 30.59 0.17 -1.91 16 10 C 0.07 1.28 5.69 86.30 0.49 1.77 16 11 N -0.69 -19.75 6.12 -517.92 -3.17 -22.93 16 12 C 0.06 1.86 6.17 85.56 0.53 2.39 16 13 C 0.45 20.26 7.82 87.66 0.69 20.95 16 14 O -0.62 -34.40 15.78 -3.07 -0.05 -34.45 16 15 N -0.59 -27.96 5.09 -306.99 -1.56 -29.52 16 16 C -0.33 -19.55 10.16 84.04 0.85 -18.70 16 17 H 0.05 3.85 7.39 -2.91 -0.02 3.83 16 18 C -0.01 -0.83 5.50 84.93 0.47 -0.36 16 19 N -0.93 -56.58 13.96 21.66 0.30 -56.28 16 20 Si 0.97 38.82 27.74 68.60 1.90 40.73 16 21 H -0.26 -9.83 7.11 99.48 0.71 -9.13 16 22 H -0.28 -10.97 7.11 99.48 0.71 -10.26 16 23 H -0.23 -7.75 6.52 99.48 0.65 -7.11 16 24 C 0.04 0.72 7.44 25.19 0.19 0.90 16 25 C -0.07 -0.88 9.87 71.24 0.70 -0.17 16 26 O -0.20 -3.15 10.73 0.33 0.00 -3.14 16 27 H 0.11 0.16 8.14 -2.39 -0.02 0.14 16 28 H 0.11 0.01 8.14 -2.39 -0.02 -0.01 16 29 H 0.11 0.36 8.14 -2.39 -0.02 0.34 16 30 H 0.41 7.43 8.20 -92.71 -0.76 6.66 16 31 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 32 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 35 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 37 H 0.34 10.53 8.43 -89.69 -0.76 9.77 16 38 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 39 H 0.12 2.91 8.14 -2.39 -0.02 2.89 16 40 H 0.39 15.20 5.76 -92.71 -0.53 14.66 16 41 H 0.28 15.43 8.31 -92.71 -0.77 14.66 16 42 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 44 H 0.10 1.49 6.49 -2.39 -0.02 1.48 16 Total: -1.00 -84.06 379.51 -2.49 -86.55 By element: Atomic # 1 Polarization: 39.99 SS G_CDS: -1.05 Total: 38.94 kcal Atomic # 6 Polarization: 17.16 SS G_CDS: 7.02 Total: 24.18 kcal Atomic # 7 Polarization: -127.69 SS G_CDS: -10.26 Total: -137.95 kcal Atomic # 8 Polarization: -52.34 SS G_CDS: -0.11 Total: -52.44 kcal Atomic # 14 Polarization: 38.82 SS G_CDS: 1.90 Total: 40.73 kcal Total: -84.06 -2.49 -86.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169076191.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.872 kcal (2) G-P(sol) polarization free energy of solvation -84.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds