Wall clock time and date at job start Fri Apr 10 2020 18:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.36092 * 116.99961 * 2 1 4 4 C 1.38544 * 119.99814 * 0.24833 * 3 2 1 5 5 C 1.38209 * 120.07196 * 180.25542 * 4 3 2 6 6 C 1.50698 * 119.96697 * 179.76621 * 5 4 3 7 7 C 1.50697 * 109.46993 * 264.72835 * 6 5 4 8 8 H 1.07991 * 120.00449 * 359.72131 * 7 6 5 9 9 C 1.37885 * 119.99686 * 179.97438 * 7 6 5 10 10 N 1.31516 * 119.99913 * 359.72095 * 9 7 6 11 11 Si 1.86798 * 119.99766 * 179.72528 * 9 7 6 12 12 H 1.48493 * 109.47326 * 90.00142 * 11 9 7 13 13 H 1.48506 * 109.46545 * 209.99892 * 11 9 7 14 14 H 1.48498 * 109.47210 * 329.99603 * 11 9 7 15 15 C 1.38866 * 120.06486 * 359.49618 * 5 4 3 16 16 N 1.39927 * 119.99441 * 180.27461 * 15 5 4 17 17 C 1.46500 * 119.99834 * 179.97438 * 16 15 5 18 18 H 1.08997 * 109.47389 * 325.00551 * 17 16 15 19 19 C 1.53001 * 109.47077 * 84.99985 * 17 16 15 20 20 O 1.42907 * 109.47054 * 64.99801 * 19 17 16 21 21 C 1.50699 * 109.47417 * 205.00185 * 17 16 15 22 22 N 1.34781 * 119.99912 * 180.02562 * 21 17 16 23 23 O 1.21279 * 119.99831 * 359.97438 * 21 17 16 24 24 C 1.38820 * 120.00563 * 0.24777 * 15 5 4 25 25 C 1.38522 * 119.92522 * 0.02562 * 24 15 5 26 26 O 1.35985 * 120.03800 * 179.97438 * 25 24 15 27 27 C 1.42903 * 116.99602 * 0.02562 * 26 25 24 28 28 H 1.08998 * 109.47512 * 300.00243 * 1 2 3 29 29 H 1.09000 * 109.46639 * 60.00743 * 1 2 3 30 30 H 1.09007 * 109.46734 * 179.97438 * 1 2 3 31 31 H 1.08000 * 119.96407 * 0.02562 * 4 3 2 32 32 H 1.08998 * 109.47083 * 144.72250 * 6 5 4 33 33 H 1.09001 * 109.46875 * 24.72513 * 6 5 4 34 34 H 0.97000 * 119.99651 * 180.02562 * 10 9 7 35 35 H 0.96994 * 120.00541 * 0.02562 * 16 15 5 36 36 H 1.08999 * 109.47409 * 184.99765 * 19 17 16 37 37 H 1.09006 * 109.47126 * 305.00236 * 19 17 16 38 38 H 0.96692 * 113.99959 * 179.97438 * 20 19 17 39 39 H 0.96997 * 120.00183 * 359.97438 * 22 21 17 40 40 H 0.96999 * 119.99460 * 180.02562 * 22 21 17 41 41 H 1.07997 * 120.04365 * 179.97438 * 24 15 5 42 42 H 1.08997 * 109.47514 * 59.99806 * 27 26 25 43 43 H 1.09005 * 109.47257 * 180.02562 * 27 26 25 44 44 H 1.09000 * 109.47289 * 299.99597 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0468 1.2126 0.0000 4 6 1.2922 2.3745 0.0052 5 6 1.9181 3.6068 -0.0001 6 6 1.0949 4.8691 0.0002 7 6 0.9243 5.3578 -1.4150 8 1 1.3713 4.8118 -2.2325 9 6 0.2018 6.5052 -1.6657 10 7 -0.3431 7.1698 -0.6702 11 14 -0.0033 7.1153 -3.4193 12 1 -1.2244 6.5140 -4.0130 13 1 -0.1310 8.5948 -3.4168 14 1 1.1826 6.7222 -4.2220 15 6 3.3046 3.6828 -0.0001 16 7 3.9367 4.9312 0.0003 17 6 5.3995 5.0116 0.0008 18 1 5.8083 4.1909 0.5902 19 6 5.9162 4.9142 -1.4360 20 8 5.4752 6.0526 -2.1789 21 6 5.8303 6.3247 0.6017 22 7 7.1411 6.6204 0.7058 23 8 4.9974 7.1159 0.9907 24 6 4.0637 2.5205 0.0000 25 6 3.4363 1.2855 -0.0004 26 8 4.1776 0.1455 -0.0008 27 6 5.5987 0.2958 -0.0002 28 1 -0.3634 0.5138 0.8899 29 1 -0.3632 0.5137 -0.8901 30 1 -0.3633 -1.0278 -0.0005 31 1 0.2138 2.3172 0.0097 32 1 1.6015 5.6330 0.5900 33 1 0.1163 4.6645 0.4344 34 1 -0.8517 7.9767 -0.8466 35 1 3.4064 5.7434 0.0010 36 1 7.0057 4.8846 -1.4292 37 1 5.5309 4.0061 -1.8999 38 1 5.7669 6.0577 -3.1008 39 1 7.8072 5.9879 0.3944 40 1 7.4184 7.4655 1.0929 41 1 5.1420 2.5790 -0.0004 42 1 5.9057 0.8445 0.8902 43 1 6.0682 -0.6880 -0.0010 44 1 5.9063 0.8454 -0.8898 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169329614.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:23 Heat of formation + Delta-G solvation = -127.420983 kcal Electronic energy + Delta-G solvation = -28774.824602 eV Core-core repulsion = 24693.352957 eV Total energy + Delta-G solvation = -4081.471644 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.156 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.24513 -39.57156 -37.92446 -37.43743 -36.56367 -34.03979 -33.68256 -33.05131 -30.81948 -29.68851 -28.20961 -27.44471 -26.87609 -25.48229 -23.89808 -22.95226 -21.56221 -20.38970 -19.89664 -18.34234 -17.77139 -17.43025 -16.81622 -16.27086 -16.17455 -16.10568 -15.60561 -15.08602 -14.95734 -14.83498 -14.76722 -14.51112 -14.19018 -13.91984 -13.72942 -13.39582 -12.86663 -12.61922 -12.35227 -12.11282 -11.91183 -11.77093 -11.55588 -11.25276 -11.07616 -10.95352 -10.78728 -10.72623 -10.45995 -10.38784 -10.13601 -9.76273 -9.69211 -9.46892 -9.32742 -8.73613 -8.32395 -7.79126 -6.35836 -5.90991 -3.96778 2.00164 2.29119 2.70611 3.31655 3.36686 3.42767 3.47169 3.65396 3.84047 3.99036 4.19011 4.42982 4.58882 4.77837 5.06028 5.10730 5.18416 5.21623 5.26968 5.37625 5.41770 5.49297 5.55947 5.57605 5.59602 5.78295 5.80642 5.97776 5.99782 6.17538 6.54034 6.73707 6.86395 7.07056 7.20223 7.26749 7.48771 7.63656 7.65663 7.79890 7.92074 8.02139 8.21831 8.27929 8.41960 8.50271 9.07772 9.66774 11.15757 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.007642 B = 0.006475 C = 0.003998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3663.245145 B = 4323.274009 C = 7001.959045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.318 6.318 3 C 0.038 3.962 4 C -0.127 4.127 5 C -0.094 4.094 6 C 0.058 3.942 7 C -0.505 4.505 8 H 0.055 0.945 9 C 0.060 3.940 10 N -0.893 5.893 11 Si 0.893 3.107 12 H -0.282 1.282 13 H -0.288 1.288 14 H -0.274 1.274 15 C 0.222 3.778 16 N -0.712 5.712 17 C 0.138 3.862 18 H 0.109 0.891 19 C 0.063 3.937 20 O -0.553 6.553 21 C 0.522 3.478 22 N -0.857 5.857 23 O -0.517 6.517 24 C -0.261 4.261 25 C 0.114 3.886 26 O -0.311 6.311 27 C 0.031 3.969 28 H 0.050 0.950 29 H 0.052 0.948 30 H 0.089 0.911 31 H 0.131 0.869 32 H 0.027 0.973 33 H 0.027 0.973 34 H 0.260 0.740 35 H 0.427 0.573 36 H 0.047 0.953 37 H 0.062 0.938 38 H 0.377 0.623 39 H 0.397 0.603 40 H 0.402 0.598 41 H 0.122 0.878 42 H 0.048 0.952 43 H 0.091 0.909 44 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.432 -9.879 0.858 19.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.233 6.233 3 C -0.008 4.008 4 C -0.147 4.147 5 C -0.098 4.098 6 C 0.021 3.979 7 C -0.543 4.543 8 H 0.074 0.926 9 C -0.142 4.142 10 N -0.532 5.532 11 Si 0.721 3.279 12 H -0.209 1.209 13 H -0.213 1.213 14 H -0.199 1.199 15 C 0.119 3.881 16 N -0.347 5.347 17 C 0.027 3.973 18 H 0.126 0.874 19 C -0.017 4.017 20 O -0.357 6.357 21 C 0.305 3.695 22 N -0.422 5.422 23 O -0.390 6.390 24 C -0.285 4.285 25 C 0.068 3.932 26 O -0.225 6.225 27 C -0.064 4.064 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.107 0.893 31 H 0.149 0.851 32 H 0.046 0.954 33 H 0.045 0.955 34 H 0.070 0.930 35 H 0.269 0.731 36 H 0.065 0.935 37 H 0.080 0.920 38 H 0.224 0.776 39 H 0.225 0.775 40 H 0.233 0.767 41 H 0.140 0.860 42 H 0.067 0.933 43 H 0.109 0.891 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 15.533 -9.544 1.688 18.309 hybrid contribution 0.505 0.904 -1.591 1.898 sum 16.038 -8.641 0.098 18.217 Atomic orbital electron populations 1.22911 0.79654 1.02666 1.01296 1.86054 1.20094 1.26541 1.90578 1.17938 0.88710 0.84819 1.09341 1.20786 0.99550 0.90313 1.04017 1.19943 0.91580 0.96949 1.01316 1.18145 0.93945 0.88197 0.97603 1.21018 1.32564 1.08789 0.91912 0.92630 1.24983 0.95704 0.96596 0.96877 1.69957 1.34876 1.17658 1.30677 0.86576 0.78309 0.77823 0.85195 1.20853 1.21342 1.19914 1.17256 0.91139 0.84408 0.95263 1.44383 1.02022 1.06888 1.81428 1.20684 0.85876 0.95889 0.94888 0.87396 1.22686 0.96394 0.90291 0.92363 1.86659 1.78813 1.43534 1.26693 1.20474 0.82655 0.88590 0.77808 1.43737 1.07226 1.23944 1.67253 1.90812 1.51325 1.49591 1.47250 1.20245 0.98635 0.90386 1.19218 1.17664 0.87752 0.84824 1.02918 1.86121 1.17705 1.28931 1.89750 1.22899 0.80067 1.02815 1.00661 0.93145 0.92939 0.89271 0.85078 0.95445 0.95461 0.92985 0.73085 0.93506 0.91997 0.77626 0.77518 0.76748 0.86045 0.93336 0.89059 0.93348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 9.81 101.05 0.99 1.41 16 2 O -0.32 -5.73 10.28 -34.65 -0.36 -6.09 16 3 C 0.04 0.73 6.70 -39.13 -0.26 0.46 16 4 C -0.13 -2.60 8.66 -39.48 -0.34 -2.94 16 5 C -0.09 -2.10 5.09 -104.40 -0.53 -2.63 16 6 C 0.06 1.52 4.53 -29.04 -0.13 1.39 16 7 C -0.50 -14.26 9.09 -34.44 -0.31 -14.57 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 9 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 10 N -0.89 -27.01 13.29 55.43 0.74 -26.27 16 11 Si 0.89 22.28 29.54 -169.99 -5.02 17.26 16 12 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 13 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 14 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 15 C 0.22 4.41 6.62 -83.71 -0.55 3.85 16 16 N -0.71 -13.75 4.98 -53.26 -0.27 -14.02 16 17 C 0.14 1.94 2.48 -69.08 -0.17 1.77 16 18 H 0.11 1.19 6.48 -51.93 -0.34 0.86 16 19 C 0.06 0.74 6.66 37.16 0.25 0.98 16 20 O -0.55 -8.01 13.09 -35.23 -0.46 -8.47 16 21 C 0.52 7.77 7.01 -10.98 -0.08 7.69 16 22 N -0.86 -7.80 8.78 31.22 0.27 -7.53 16 23 O -0.52 -10.65 16.67 5.56 0.09 -10.56 16 24 C -0.26 -4.40 7.84 -39.26 -0.31 -4.70 16 25 C 0.11 2.05 6.70 -39.14 -0.26 1.79 16 26 O -0.31 -5.05 10.28 -34.31 -0.35 -5.40 16 27 C 0.03 0.33 9.81 101.05 0.99 1.32 16 28 H 0.05 0.67 7.65 -51.93 -0.40 0.27 16 29 H 0.05 0.73 7.67 -51.93 -0.40 0.33 16 30 H 0.09 0.98 8.14 -51.92 -0.42 0.55 16 31 H 0.13 2.55 6.29 -52.49 -0.33 2.22 16 32 H 0.03 0.77 6.80 -51.93 -0.35 0.42 16 33 H 0.03 0.75 8.05 -51.93 -0.42 0.33 16 34 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 35 H 0.43 9.98 5.89 -40.82 -0.24 9.74 16 36 H 0.05 0.34 7.71 -51.93 -0.40 -0.06 16 37 H 0.06 0.76 7.81 -51.93 -0.41 0.35 16 38 H 0.38 3.69 9.12 45.56 0.42 4.10 16 39 H 0.40 2.10 8.34 -40.82 -0.34 1.75 16 40 H 0.40 3.31 8.93 -40.82 -0.36 2.94 16 41 H 0.12 1.60 4.44 -52.49 -0.23 1.36 16 42 H 0.05 0.46 7.66 -51.93 -0.40 0.06 16 43 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.05 0.46 7.66 -51.93 -0.40 0.06 16 LS Contribution 367.51 15.07 5.54 5.54 Total: -1.00 -38.11 367.51 -5.62 -43.73 By element: Atomic # 1 Polarization: 19.32 SS G_CDS: -4.98 Total: 14.34 kcal Atomic # 6 Polarization: -1.72 SS G_CDS: -0.82 Total: -2.54 kcal Atomic # 7 Polarization: -48.56 SS G_CDS: 0.75 Total: -47.82 kcal Atomic # 8 Polarization: -29.44 SS G_CDS: -1.08 Total: -30.52 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -38.11 -5.62 -43.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169329614.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.691 kcal (2) G-P(sol) polarization free energy of solvation -38.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds