Wall clock time and date at job start Fri Apr 10 2020 18:32:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.36092 * 116.99961 * 2 1 4 4 C 1.38544 * 119.99814 * 0.24833 * 3 2 1 5 5 C 1.38209 * 120.07196 * 180.25542 * 4 3 2 6 6 C 1.50698 * 119.96697 * 179.76621 * 5 4 3 7 7 C 1.50697 * 109.46993 * 264.72835 * 6 5 4 8 8 H 1.07991 * 120.00449 * 359.72131 * 7 6 5 9 9 C 1.37885 * 119.99686 * 179.97438 * 7 6 5 10 10 N 1.31516 * 119.99913 * 359.72095 * 9 7 6 11 11 Si 1.86798 * 119.99766 * 179.72528 * 9 7 6 12 12 H 1.48493 * 109.47326 * 90.00142 * 11 9 7 13 13 H 1.48506 * 109.46545 * 209.99892 * 11 9 7 14 14 H 1.48498 * 109.47210 * 329.99603 * 11 9 7 15 15 C 1.38866 * 120.06486 * 359.49618 * 5 4 3 16 16 N 1.39927 * 119.99441 * 180.27461 * 15 5 4 17 17 C 1.46500 * 119.99834 * 179.97438 * 16 15 5 18 18 H 1.08997 * 109.47389 * 325.00551 * 17 16 15 19 19 C 1.53001 * 109.47077 * 84.99985 * 17 16 15 20 20 O 1.42907 * 109.47054 * 64.99801 * 19 17 16 21 21 C 1.50699 * 109.47417 * 205.00185 * 17 16 15 22 22 N 1.34781 * 119.99912 * 180.02562 * 21 17 16 23 23 O 1.21279 * 119.99831 * 359.97438 * 21 17 16 24 24 C 1.38820 * 120.00563 * 0.24777 * 15 5 4 25 25 C 1.38522 * 119.92522 * 0.02562 * 24 15 5 26 26 O 1.35985 * 120.03800 * 179.97438 * 25 24 15 27 27 C 1.42903 * 116.99602 * 0.02562 * 26 25 24 28 28 H 1.08998 * 109.47512 * 300.00243 * 1 2 3 29 29 H 1.09000 * 109.46639 * 60.00743 * 1 2 3 30 30 H 1.09007 * 109.46734 * 179.97438 * 1 2 3 31 31 H 1.08000 * 119.96407 * 0.02562 * 4 3 2 32 32 H 1.08998 * 109.47083 * 144.72250 * 6 5 4 33 33 H 1.09001 * 109.46875 * 24.72513 * 6 5 4 34 34 H 0.97000 * 119.99651 * 180.02562 * 10 9 7 35 35 H 0.96994 * 120.00541 * 0.02562 * 16 15 5 36 36 H 1.08999 * 109.47409 * 184.99765 * 19 17 16 37 37 H 1.09006 * 109.47126 * 305.00236 * 19 17 16 38 38 H 0.96692 * 113.99959 * 179.97438 * 20 19 17 39 39 H 0.96997 * 120.00183 * 359.97438 * 22 21 17 40 40 H 0.96999 * 119.99460 * 180.02562 * 22 21 17 41 41 H 1.07997 * 120.04365 * 179.97438 * 24 15 5 42 42 H 1.08997 * 109.47514 * 59.99806 * 27 26 25 43 43 H 1.09005 * 109.47257 * 180.02562 * 27 26 25 44 44 H 1.09000 * 109.47289 * 299.99597 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0468 1.2126 0.0000 4 6 1.2922 2.3745 0.0052 5 6 1.9181 3.6068 -0.0001 6 6 1.0949 4.8691 0.0002 7 6 0.9243 5.3578 -1.4150 8 1 1.3713 4.8118 -2.2325 9 6 0.2018 6.5052 -1.6657 10 7 -0.3431 7.1698 -0.6702 11 14 -0.0033 7.1153 -3.4193 12 1 -1.2244 6.5140 -4.0130 13 1 -0.1310 8.5948 -3.4168 14 1 1.1826 6.7222 -4.2220 15 6 3.3046 3.6828 -0.0001 16 7 3.9367 4.9312 0.0003 17 6 5.3995 5.0116 0.0008 18 1 5.8083 4.1909 0.5902 19 6 5.9162 4.9142 -1.4360 20 8 5.4752 6.0526 -2.1789 21 6 5.8303 6.3247 0.6017 22 7 7.1411 6.6204 0.7058 23 8 4.9974 7.1159 0.9907 24 6 4.0637 2.5205 0.0000 25 6 3.4363 1.2855 -0.0004 26 8 4.1776 0.1455 -0.0008 27 6 5.5987 0.2958 -0.0002 28 1 -0.3634 0.5138 0.8899 29 1 -0.3632 0.5137 -0.8901 30 1 -0.3633 -1.0278 -0.0005 31 1 0.2138 2.3172 0.0097 32 1 1.6015 5.6330 0.5900 33 1 0.1163 4.6645 0.4344 34 1 -0.8517 7.9767 -0.8466 35 1 3.4064 5.7434 0.0010 36 1 7.0057 4.8846 -1.4292 37 1 5.5309 4.0061 -1.8999 38 1 5.7669 6.0577 -3.1008 39 1 7.8072 5.9879 0.3944 40 1 7.4184 7.4655 1.0929 41 1 5.1420 2.5790 -0.0004 42 1 5.9057 0.8445 0.8902 43 1 6.0682 -0.6880 -0.0010 44 1 5.9063 0.8454 -0.8898 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169329614.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:22 Heat of formation + Delta-G solvation = -161.549316 kcal Electronic energy + Delta-G solvation = -28776.304517 eV Core-core repulsion = 24693.352957 eV Total energy + Delta-G solvation = -4082.951560 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.156 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.57307 -40.77257 -39.17916 -38.77933 -37.68034 -35.46862 -35.01154 -34.72459 -32.54649 -30.93968 -29.38559 -29.11411 -27.91425 -26.96111 -25.14282 -24.64468 -22.90553 -21.92905 -21.03167 -19.55088 -18.87674 -18.53602 -18.44537 -18.01848 -17.42554 -17.36048 -16.82252 -16.56518 -16.21479 -16.05611 -15.98021 -15.94493 -15.40357 -15.08199 -15.06308 -14.60376 -14.50245 -14.12404 -13.93058 -13.43911 -13.31982 -13.17716 -12.94670 -12.80367 -12.63901 -12.47115 -12.25609 -12.14127 -12.04071 -11.91152 -11.47084 -11.31843 -11.17242 -10.83725 -10.66950 -10.56818 -10.17093 -9.22491 -8.21352 -7.73866 -6.26462 0.52626 0.80999 1.36361 1.38705 1.49342 1.59392 2.24653 2.40967 2.52110 2.58724 2.75653 2.99078 3.15796 3.31972 3.87801 3.95594 4.09768 4.23924 4.26622 4.34195 4.43880 4.45413 4.47363 4.54865 4.55600 4.61761 4.70515 4.75081 4.79185 4.84357 5.02214 5.19257 5.37574 5.43830 5.68812 5.79004 5.88474 5.91423 6.22536 6.30376 6.36790 6.57889 6.79881 6.84791 6.87670 6.94037 7.34309 7.41073 8.93812 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.007642 B = 0.006475 C = 0.003998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3663.245145 B = 4323.274009 C = 7001.959045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.328 6.328 3 C 0.023 3.977 4 C -0.130 4.130 5 C -0.139 4.139 6 C 0.076 3.924 7 C -0.508 4.508 8 H 0.049 0.951 9 C 0.004 3.996 10 N -0.931 5.931 11 Si 0.960 3.040 12 H -0.271 1.271 13 H -0.285 1.285 14 H -0.267 1.267 15 C 0.219 3.781 16 N -0.726 5.726 17 C 0.127 3.873 18 H 0.146 0.854 19 C 0.064 3.936 20 O -0.590 6.590 21 C 0.518 3.482 22 N -0.824 5.824 23 O -0.588 6.588 24 C -0.245 4.245 25 C 0.125 3.875 26 O -0.326 6.326 27 C 0.015 3.985 28 H 0.051 0.949 29 H 0.047 0.953 30 H 0.123 0.877 31 H 0.126 0.874 32 H -0.004 1.004 33 H -0.004 1.004 34 H 0.262 0.738 35 H 0.402 0.598 36 H 0.105 0.895 37 H 0.060 0.940 38 H 0.394 0.606 39 H 0.420 0.580 40 H 0.409 0.591 41 H 0.166 0.834 42 H 0.065 0.935 43 H 0.118 0.882 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.011 -11.967 -0.445 23.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.243 6.243 3 C -0.023 4.023 4 C -0.150 4.150 5 C -0.143 4.143 6 C 0.039 3.961 7 C -0.546 4.546 8 H 0.068 0.932 9 C -0.194 4.194 10 N -0.571 5.571 11 Si 0.785 3.215 12 H -0.196 1.196 13 H -0.210 1.210 14 H -0.191 1.191 15 C 0.115 3.885 16 N -0.357 5.357 17 C 0.017 3.983 18 H 0.163 0.837 19 C -0.016 4.016 20 O -0.398 6.398 21 C 0.302 3.698 22 N -0.390 5.390 23 O -0.467 6.467 24 C -0.268 4.268 25 C 0.079 3.921 26 O -0.240 6.240 27 C -0.079 4.079 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.141 0.859 31 H 0.144 0.856 32 H 0.014 0.986 33 H 0.015 0.985 34 H 0.071 0.929 35 H 0.239 0.761 36 H 0.123 0.877 37 H 0.078 0.922 38 H 0.244 0.756 39 H 0.253 0.747 40 H 0.241 0.759 41 H 0.183 0.817 42 H 0.084 0.916 43 H 0.137 0.863 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 19.232 -11.694 0.357 22.511 hybrid contribution -0.452 1.428 -1.134 1.879 sum 18.780 -10.266 -0.777 21.417 Atomic orbital electron populations 1.23160 0.77904 1.04856 1.01162 1.86033 1.21958 1.25820 1.90528 1.18060 0.89730 0.84673 1.09852 1.20703 0.99591 0.90474 1.04212 1.19656 0.92918 0.95595 1.06172 1.17757 0.92737 0.89677 0.95955 1.21246 1.31946 1.08721 0.92700 0.93224 1.25869 0.95460 0.96850 1.01184 1.70095 1.35874 1.18183 1.32973 0.85522 0.78718 0.77200 0.80065 1.19639 1.21043 1.19136 1.17364 0.90404 0.85730 0.94984 1.44552 1.04290 1.05510 1.81352 1.21199 0.83071 0.96627 0.97364 0.83722 1.22826 0.99503 0.89261 0.89977 1.86621 1.79891 1.44880 1.28391 1.20744 0.83653 0.88355 0.77059 1.43444 1.05721 1.24550 1.65265 1.90794 1.53586 1.51696 1.50619 1.20483 1.00421 0.88535 1.17373 1.17831 0.87689 0.85883 1.00673 1.86122 1.20665 1.28048 1.89168 1.23368 0.76879 1.05352 1.02302 0.93047 0.93383 0.85871 0.85584 0.98613 0.98523 0.92939 0.76053 0.87713 0.92161 0.75606 0.74730 0.75905 0.81706 0.91614 0.86347 0.91576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.66 9.81 113.37 1.11 1.77 16 2 O -0.33 -11.61 10.28 -80.63 -0.83 -12.43 16 3 C 0.02 0.88 6.70 22.56 0.15 1.03 16 4 C -0.13 -5.55 8.66 22.34 0.19 -5.36 16 5 C -0.14 -6.53 5.09 -19.72 -0.10 -6.63 16 6 C 0.08 4.29 4.53 29.10 0.13 4.42 16 7 C -0.51 -30.19 9.09 25.60 0.23 -29.96 16 8 H 0.05 2.94 7.74 -2.92 -0.02 2.92 16 9 C 0.00 0.24 5.46 84.66 0.46 0.70 16 10 N -0.93 -59.12 13.29 21.45 0.28 -58.84 16 11 Si 0.96 46.94 29.54 68.60 2.03 48.96 16 12 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 13 H -0.28 -13.70 7.11 99.48 0.71 -12.99 16 14 H -0.27 -12.61 7.11 99.48 0.71 -11.91 16 15 C 0.22 8.73 6.62 38.14 0.25 8.98 16 16 N -0.73 -28.44 4.98 -322.41 -1.61 -30.05 16 17 C 0.13 3.29 2.48 44.25 0.11 3.40 16 18 H 0.15 2.55 6.48 -2.39 -0.02 2.54 16 19 C 0.06 1.26 6.66 71.98 0.48 1.74 16 20 O -0.59 -16.12 13.09 -148.98 -1.95 -18.07 16 21 C 0.52 14.86 7.01 87.66 0.61 15.47 16 22 N -0.82 -12.61 8.78 -173.53 -1.52 -14.13 16 23 O -0.59 -25.15 16.67 -3.03 -0.05 -25.20 16 24 C -0.24 -7.64 7.84 22.48 0.18 -7.46 16 25 C 0.13 4.26 6.70 22.55 0.15 4.41 16 26 O -0.33 -9.46 10.28 -79.41 -0.82 -10.28 16 27 C 0.02 0.25 9.81 113.37 1.11 1.36 16 28 H 0.05 1.39 7.65 -2.39 -0.02 1.37 16 29 H 0.05 1.35 7.67 -2.39 -0.02 1.33 16 30 H 0.12 2.49 8.14 -2.38 -0.02 2.47 16 31 H 0.13 5.26 6.29 -2.91 -0.02 5.24 16 32 H 0.00 -0.26 6.80 -2.39 -0.02 -0.28 16 33 H 0.00 -0.22 8.05 -2.39 -0.02 -0.24 16 34 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 35 H 0.40 19.99 5.89 -92.71 -0.55 19.44 16 36 H 0.11 0.87 7.71 -2.39 -0.02 0.85 16 37 H 0.06 1.23 7.81 -2.38 -0.02 1.21 16 38 H 0.39 6.93 9.12 -74.06 -0.68 6.25 16 39 H 0.42 2.43 8.34 -92.71 -0.77 1.66 16 40 H 0.41 5.78 8.93 -92.71 -0.83 4.95 16 41 H 0.17 3.51 4.44 -2.91 -0.01 3.50 16 42 H 0.07 0.87 7.66 -2.39 -0.02 0.86 16 43 H 0.12 1.31 8.14 -2.38 -0.02 1.29 16 44 H 0.07 0.88 7.66 -2.39 -0.02 0.86 16 Total: -1.00 -90.76 367.51 -1.11 -91.86 By element: Atomic # 1 Polarization: 36.03 SS G_CDS: -1.73 Total: 34.30 kcal Atomic # 6 Polarization: -11.21 SS G_CDS: 5.08 Total: -6.13 kcal Atomic # 7 Polarization: -100.17 SS G_CDS: -2.84 Total: -103.02 kcal Atomic # 8 Polarization: -62.34 SS G_CDS: -3.65 Total: -65.98 kcal Atomic # 14 Polarization: 46.94 SS G_CDS: 2.03 Total: 48.96 kcal Total: -90.76 -1.11 -91.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169329614.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.684 kcal (2) G-P(sol) polarization free energy of solvation -90.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds