Wall clock time and date at job start Fri Apr 10 2020 18:32:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86789 * 120.00052 * 2 1 4 4 H 1.48506 * 109.47182 * 90.00316 * 3 2 1 5 5 H 1.48500 * 109.47220 * 210.00091 * 3 2 1 6 6 H 1.48500 * 109.47485 * 330.00166 * 3 2 1 7 7 C 1.38953 * 119.99474 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00773 * 0.02562 * 7 2 1 9 9 N 1.37100 * 119.99422 * 180.02562 * 7 2 1 10 10 C 1.34780 * 119.99732 * 180.02562 * 9 7 2 11 11 O 1.21288 * 120.00063 * 359.97438 * 10 9 7 12 12 C 1.50706 * 119.99928 * 179.97438 * 10 9 7 13 13 N 1.46902 * 109.47051 * 179.97438 * 12 10 9 14 14 C 1.46901 * 110.99727 * 180.02562 * 13 12 10 15 15 H 1.09003 * 110.88804 * 31.11892 * 14 13 12 16 16 C 1.55158 * 111.00229 * 267.19405 * 14 13 12 17 17 C 1.54324 * 102.94177 * 206.42475 * 16 14 13 18 18 N 1.47020 * 107.26902 * 22.19644 * 17 16 14 19 19 C 1.34780 * 125.64810 * 181.09615 * 18 17 16 20 20 O 1.21278 * 120.00295 * 175.11947 * 19 18 17 21 21 C 1.50703 * 119.99708 * 355.11644 * 19 18 17 22 22 H 1.08999 * 110.43564 * 23.80875 * 21 19 18 23 23 C 1.54627 * 110.48532 * 146.35760 * 21 19 18 24 24 C 1.54478 * 101.76321 * 93.88000 * 23 21 19 25 25 N 1.46765 * 105.47778 * 25.41563 * 24 23 21 26 26 C 1.34419 * 111.29679 * 342.98398 * 25 24 23 27 27 O 1.21279 * 124.93884 * 180.45605 * 26 25 24 28 28 C 1.47426 * 108.70654 * 1.05566 * 18 17 16 29 29 H 0.96999 * 119.99940 * 359.97438 * 1 2 3 30 30 H 0.96997 * 120.00363 * 359.97438 * 9 7 2 31 31 H 1.09002 * 109.46914 * 299.99995 * 12 10 9 32 32 H 1.09001 * 109.47199 * 59.99611 * 12 10 9 33 33 H 1.00900 * 110.99565 * 56.04457 * 13 12 10 34 34 H 1.08998 * 110.72116 * 324.78973 * 16 14 13 35 35 H 1.09005 * 110.71539 * 88.06355 * 16 14 13 36 36 H 1.08999 * 109.88026 * 262.77966 * 17 16 14 37 37 H 1.08995 * 110.01022 * 141.68781 * 17 16 14 38 38 H 1.09004 * 110.96656 * 211.99788 * 23 21 19 39 39 H 1.08991 * 110.97007 * 335.72088 * 23 21 19 40 40 H 1.09007 * 110.24363 * 144.41628 * 24 23 21 41 41 H 1.09001 * 110.24417 * 266.41334 * 24 23 21 42 42 H 0.97000 * 124.35355 * 162.98608 * 25 24 23 43 43 H 1.08997 * 110.36592 * 217.03282 * 28 18 17 44 44 H 1.09001 * 110.36120 * 94.71167 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6176 0.0000 4 1 2.4957 2.0463 1.4001 5 1 3.5456 1.4401 -0.7000 6 1 1.4456 2.6526 -0.7000 7 6 2.0088 -1.2034 -0.0005 8 1 1.4689 -2.1387 -0.0014 9 7 3.3798 -1.2034 0.0000 10 6 4.0536 -2.3707 -0.0011 11 8 3.4472 -3.4210 -0.0020 12 6 5.5607 -2.3707 -0.0011 13 7 6.0503 -3.7557 -0.0017 14 6 7.5188 -3.7949 -0.0011 15 1 7.9303 -2.9340 0.5259 16 6 8.0734 -3.8798 -1.4477 17 6 9.4365 -4.5772 -1.2549 18 7 9.3761 -5.3089 0.0189 19 6 10.3779 -6.0317 0.5578 20 8 10.2471 -6.5228 1.6590 21 6 11.6606 -6.2298 -0.2080 22 1 11.7965 -5.4302 -0.9362 23 6 12.8649 -6.2909 0.7599 24 6 13.0085 -7.8119 0.9884 25 7 12.4319 -8.4433 -0.2044 26 6 11.6658 -7.5791 -0.8922 27 8 11.0653 -7.8430 -1.9123 28 6 8.0386 -5.1203 0.6095 29 1 -0.4850 0.8400 0.0004 30 1 3.8648 -0.3634 0.0004 31 1 5.9240 -1.8561 -0.8906 32 1 5.9241 -1.8576 0.8894 33 1 5.6747 -4.2716 -0.7833 34 1 7.4180 -4.4815 -2.0773 35 1 8.2062 -2.8831 -1.8688 36 1 10.2318 -3.8327 -1.2173 37 1 9.6186 -5.2729 -2.0738 38 1 13.7608 -5.8800 0.2943 39 1 12.6414 -5.7749 1.6936 40 1 14.0603 -8.0809 1.0865 41 1 12.4567 -8.1133 1.8788 42 1 12.5841 -9.3657 -0.4632 43 1 8.1112 -5.0357 1.6938 44 1 7.3830 -5.9470 0.3357 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184859167.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:36 Heat of formation + Delta-G solvation = -86.916129 kcal Electronic energy + Delta-G solvation = -27008.475317 eV Core-core repulsion = 22961.052846 eV Total energy + Delta-G solvation = -4047.422471 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.41315 -39.73965 -38.56860 -37.81517 -36.64601 -34.90208 -33.88376 -32.20244 -31.68491 -30.75939 -29.27622 -28.19685 -26.31093 -24.16581 -23.40441 -22.57585 -21.73167 -20.95532 -19.42911 -19.38256 -18.43430 -18.13539 -17.82314 -16.63375 -16.31606 -16.04719 -15.72384 -15.33146 -14.84334 -14.78174 -14.69280 -14.18872 -14.12557 -13.83823 -13.72412 -13.42406 -13.21478 -13.05683 -13.01477 -12.87034 -12.56610 -12.18965 -12.13472 -12.04224 -11.95186 -11.69003 -11.47158 -11.17669 -11.02467 -10.61432 -10.50548 -10.17290 -9.99056 -9.59244 -9.56826 -8.95077 -8.62964 -8.23890 -8.18516 -6.32397 -3.84027 1.81228 2.24566 2.62647 2.94904 3.00356 3.05467 3.13735 3.70822 3.80446 3.86498 3.92758 4.00551 4.08760 4.34683 4.37836 4.52557 4.58159 4.68195 4.85528 4.91583 5.02229 5.03738 5.13599 5.20848 5.27304 5.30945 5.44809 5.49683 5.55912 5.68731 5.73879 5.79552 5.81126 5.90259 5.96307 6.24399 6.46869 6.98237 7.14792 7.45859 7.56274 7.71161 7.74801 8.12812 8.57753 8.93398 9.40544 9.80210 10.80668 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.035089 B = 0.002015 C = 0.002001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.769236 B =13889.703701 C =13988.010932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.041 3.959 3 Si 0.881 3.119 4 H -0.270 1.270 5 H -0.270 1.270 6 H -0.277 1.277 7 C -0.305 4.305 8 H 0.120 0.880 9 N -0.590 5.590 10 C 0.449 3.551 11 O -0.564 6.564 12 C 0.050 3.950 13 N -0.656 5.656 14 C 0.079 3.921 15 H 0.094 0.906 16 C -0.165 4.165 17 C 0.099 3.901 18 N -0.611 5.611 19 C 0.548 3.452 20 O -0.530 6.530 21 C -0.149 4.149 22 H 0.125 0.875 23 C -0.115 4.115 24 C 0.101 3.899 25 N -0.724 5.724 26 C 0.536 3.464 27 O -0.521 6.521 28 C 0.116 3.884 29 H 0.273 0.727 30 H 0.370 0.630 31 H 0.047 0.953 32 H 0.089 0.911 33 H 0.356 0.644 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.070 0.930 37 H 0.077 0.923 38 H 0.092 0.908 39 H 0.100 0.900 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.415 0.585 43 H 0.086 0.914 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.433 -7.761 -0.992 32.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.162 4.162 3 Si 0.707 3.293 4 H -0.196 1.196 5 H -0.196 1.196 6 H -0.202 1.202 7 C -0.434 4.434 8 H 0.137 0.863 9 N -0.229 5.229 10 C 0.234 3.766 11 O -0.446 6.446 12 C -0.083 4.083 13 N -0.288 5.288 14 C -0.033 4.033 15 H 0.112 0.888 16 C -0.205 4.205 17 C -0.024 4.024 18 N -0.345 5.345 19 C 0.335 3.665 20 O -0.406 6.406 21 C -0.173 4.173 22 H 0.142 0.858 23 C -0.153 4.153 24 C -0.023 4.023 25 N -0.380 5.380 26 C 0.320 3.680 27 O -0.396 6.396 28 C -0.007 4.007 29 H 0.084 0.916 30 H 0.203 0.797 31 H 0.065 0.935 32 H 0.107 0.893 33 H 0.177 0.823 34 H 0.102 0.898 35 H 0.104 0.896 36 H 0.089 0.911 37 H 0.096 0.904 38 H 0.110 0.890 39 H 0.119 0.881 40 H 0.102 0.898 41 H 0.102 0.898 42 H 0.254 0.746 43 H 0.105 0.895 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 30.366 -8.754 -0.188 31.603 hybrid contribution 0.868 1.399 -1.127 1.995 sum 31.234 -7.355 -1.315 32.115 Atomic orbital electron populations 1.69624 1.05647 1.27514 1.49248 1.25053 0.95513 0.98013 0.97654 0.86656 0.79701 0.84009 0.78899 1.19589 1.19551 1.20200 1.19435 0.79213 0.96652 1.48101 0.86258 1.42199 1.07553 1.06130 1.67036 1.19679 0.88130 0.84608 0.84166 1.90578 1.69391 1.30918 1.53667 1.21741 0.95175 0.89975 1.01426 1.59878 1.04211 1.13081 1.51673 1.22737 0.88813 0.97675 0.94102 0.88760 1.23445 0.96278 1.01626 0.99139 1.22086 0.98603 0.95588 0.86153 1.48378 1.13597 1.49672 1.22823 1.19312 0.83245 0.78275 0.85676 1.90734 1.80969 1.49087 1.19803 1.22122 0.95620 0.99256 1.00332 0.85753 1.22570 0.96072 0.96438 1.00255 1.22150 0.99291 0.92541 0.88358 1.46113 1.50591 1.14638 1.26683 1.20122 0.78228 0.86242 0.83402 1.90801 1.44462 1.80746 1.23602 1.22223 0.81560 0.97658 0.99259 0.91595 0.79690 0.93477 0.89300 0.82268 0.89781 0.89626 0.91140 0.90444 0.88974 0.88108 0.89820 0.89832 0.74632 0.89529 0.90373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.61 13.96 55.50 0.77 -24.84 16 2 C 0.04 1.11 5.50 -17.47 -0.10 1.01 16 3 Si 0.88 19.10 27.74 -169.99 -4.71 14.39 16 4 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 5 H -0.27 -5.28 6.52 56.52 0.37 -4.91 16 6 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 7 C -0.31 -8.57 10.16 -14.93 -0.15 -8.72 16 8 H 0.12 3.85 7.39 -52.49 -0.39 3.46 16 9 N -0.59 -13.78 5.09 -10.96 -0.06 -13.83 16 10 C 0.45 9.92 7.82 -10.98 -0.09 9.83 16 11 O -0.56 -14.96 15.78 5.55 0.09 -14.87 16 12 C 0.05 0.76 6.03 -4.97 -0.03 0.73 16 13 N -0.66 -9.49 6.04 -105.72 -0.64 -10.12 16 14 C 0.08 0.85 3.38 -65.56 -0.22 0.62 16 15 H 0.09 0.93 7.83 -51.93 -0.41 0.52 16 16 C -0.17 -1.41 6.55 -24.90 -0.16 -1.58 16 17 C 0.10 0.80 6.00 -3.07 -0.02 0.78 16 18 N -0.61 -6.49 3.33 -170.52 -0.57 -7.05 16 19 C 0.55 6.12 6.84 -10.98 -0.08 6.04 16 20 O -0.53 -7.42 16.32 5.56 0.09 -7.33 16 21 C -0.15 -1.17 3.03 -91.78 -0.28 -1.45 16 22 H 0.12 0.74 6.99 -51.93 -0.36 0.37 16 23 C -0.12 -0.56 6.41 -25.10 -0.16 -0.72 16 24 C 0.10 0.49 7.55 -3.12 -0.02 0.47 16 25 N -0.72 -5.05 6.24 -59.20 -0.37 -5.42 16 26 C 0.54 5.39 7.74 -10.86 -0.08 5.31 16 27 O -0.52 -7.22 18.03 5.56 0.10 -7.12 16 28 C 0.12 1.37 6.63 -2.53 -0.02 1.35 16 29 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 30 H 0.37 7.52 5.76 -40.82 -0.24 7.29 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.09 1.22 8.08 -51.93 -0.42 0.80 16 33 H 0.36 5.37 7.89 -39.29 -0.31 5.06 16 34 H 0.08 0.77 7.75 -51.93 -0.40 0.37 16 35 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.07 0.41 7.94 -51.93 -0.41 0.00 16 37 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 39 H 0.10 0.53 7.65 -51.93 -0.40 0.13 16 40 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 41 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.41 2.22 8.96 -40.82 -0.37 1.85 16 43 H 0.09 1.11 7.99 -51.93 -0.41 0.69 16 44 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 366.42 15.07 5.52 5.52 Total: -1.00 -37.08 366.42 -7.42 -44.50 By element: Atomic # 1 Polarization: 18.74 SS G_CDS: -6.24 Total: 12.50 kcal Atomic # 6 Polarization: 15.08 SS G_CDS: -1.41 Total: 13.68 kcal Atomic # 7 Polarization: -60.41 SS G_CDS: -0.86 Total: -61.27 kcal Atomic # 8 Polarization: -29.60 SS G_CDS: 0.28 Total: -29.32 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -4.71 Total: 14.39 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -37.08 -7.42 -44.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184859167.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.417 kcal (2) G-P(sol) polarization free energy of solvation -37.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds