Wall clock time and date at job start Fri Apr 10 2020 18:32:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86799 * 120.00020 * 2 1 4 4 H 1.48502 * 109.47105 * 270.00224 * 3 2 1 5 5 H 1.48501 * 109.47056 * 29.99953 * 3 2 1 6 6 H 1.48497 * 109.47011 * 149.99789 * 3 2 1 7 7 C 1.38940 * 119.99968 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00082 * 359.97438 * 7 2 1 9 9 N 1.37098 * 120.00374 * 180.02562 * 7 2 1 10 10 C 1.34773 * 120.00327 * 179.97438 * 9 7 2 11 11 O 1.21289 * 120.00250 * 359.97438 * 10 9 7 12 12 C 1.50704 * 119.99777 * 180.02562 * 10 9 7 13 13 N 1.46905 * 109.46986 * 179.97438 * 12 10 9 14 14 C 1.46890 * 111.00016 * 179.97438 * 13 12 10 15 15 H 1.09006 * 110.64586 * 36.69084 * 14 13 12 16 16 C 1.55158 * 110.72466 * 273.55163 * 14 13 12 17 17 C 1.54916 * 101.58013 * 206.13643 * 16 14 13 18 18 N 1.47425 * 104.83392 * 37.00522 * 17 16 14 19 19 C 1.34776 * 125.64469 * 155.91634 * 18 17 16 20 20 O 1.21284 * 119.99800 * 172.46841 * 19 18 17 21 21 C 1.50701 * 120.00436 * 352.46697 * 19 18 17 22 22 C 1.50698 * 115.54810 * 292.93589 * 21 19 18 23 23 N 1.34777 * 120.00163 * 302.66680 * 22 21 19 24 24 O 1.21283 * 120.00343 * 122.66677 * 22 21 19 25 25 C 1.52997 * 117.50212 * 147.26610 * 21 19 18 26 26 C 1.52999 * 117.49898 * 78.59955 * 21 19 18 27 27 C 1.47016 * 108.70450 * 335.87252 * 18 17 16 28 28 H 0.97005 * 119.99874 * 359.97438 * 1 2 3 29 29 H 0.97004 * 119.99707 * 359.97438 * 9 7 2 30 30 H 1.09002 * 109.46994 * 60.00201 * 12 10 9 31 31 H 1.09000 * 109.47382 * 299.99701 * 12 10 9 32 32 H 1.00902 * 110.99869 * 303.95605 * 13 12 10 33 33 H 1.08998 * 111.00160 * 324.20551 * 16 14 13 34 34 H 1.08998 * 111.00831 * 88.01911 * 16 14 13 35 35 H 1.09006 * 110.36283 * 155.84430 * 17 16 14 36 36 H 1.08997 * 110.36619 * 278.05459 * 17 16 14 37 37 H 0.96996 * 119.99731 * 354.99748 * 23 22 21 38 38 H 0.97000 * 119.99928 * 175.00060 * 23 22 21 39 39 H 1.09005 * 117.49755 * 359.97438 * 25 21 19 40 40 H 1.09000 * 117.50015 * 145.02366 * 25 21 19 41 41 H 1.08994 * 117.50281 * 214.97692 * 26 21 19 42 42 H 1.09002 * 117.49711 * 0.02562 * 26 21 19 43 43 H 1.08997 * 109.88546 * 241.64052 * 27 18 17 44 44 H 1.09004 * 109.88135 * 120.47550 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4456 2.6527 0.7000 6 1 3.5457 1.4401 0.7001 7 6 2.0089 -1.2033 -0.0005 8 1 1.4689 -2.1386 -0.0005 9 7 3.3798 -1.2034 0.0000 10 6 4.0537 -2.3705 0.0000 11 8 3.4473 -3.4209 0.0000 12 6 5.5607 -2.3705 0.0012 13 7 6.0504 -3.7555 0.0015 14 6 7.5188 -3.7947 0.0021 15 1 7.9246 -2.9872 0.6116 16 6 8.0706 -3.7197 -1.4461 17 6 9.4363 -4.4355 -1.2961 18 7 9.1879 -5.5244 -0.3338 19 6 9.9057 -6.6604 -0.2308 20 8 9.6988 -7.4275 0.6856 21 6 10.9655 -6.9777 -1.2542 22 6 10.4608 -7.2638 -2.6450 23 7 9.5722 -8.2565 -2.8485 24 8 10.8544 -6.6009 -3.5813 25 6 12.1995 -7.7467 -0.7783 26 6 12.3103 -6.2597 -1.1245 27 6 8.0283 -5.1654 0.4956 28 1 -0.4850 0.8401 0.0004 29 1 3.8649 -0.3633 0.0004 30 1 5.9234 -1.8571 0.8917 31 1 5.9248 -1.8563 -0.8883 32 1 5.6743 -4.2718 0.7826 33 1 7.4226 -4.2560 -2.1393 34 1 8.2038 -2.6846 -1.7605 35 1 9.7586 -4.8424 -2.2546 36 1 10.1851 -3.7460 -0.9063 37 1 9.3125 -8.8332 -2.1132 38 1 9.1924 -8.3941 -3.7304 39 1 12.2451 -8.0229 0.2752 40 1 12.6467 -8.4593 -1.4714 41 1 12.8303 -5.9948 -2.0450 42 1 12.4287 -5.5582 -0.2986 43 1 8.3279 -5.0949 1.5412 44 1 7.2450 -5.9148 0.3819 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185289779.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:39 Heat of formation + Delta-G solvation = -65.274953 kcal Electronic energy + Delta-G solvation = -27252.881251 eV Core-core repulsion = 23206.397212 eV Total energy + Delta-G solvation = -4046.484039 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.19424 -39.57334 -38.63634 -37.92381 -36.28739 -34.90011 -34.04354 -33.88549 -31.70605 -30.84854 -29.33788 -26.80999 -25.60058 -23.88111 -23.56893 -22.98924 -21.69099 -20.67987 -19.50736 -19.38206 -18.39160 -18.24403 -17.51926 -16.85924 -16.45091 -16.17431 -15.77515 -15.41181 -15.29951 -14.88994 -14.76741 -14.46665 -14.09963 -13.95131 -13.67818 -13.48109 -13.17758 -13.00494 -12.68352 -12.53400 -12.18174 -12.15046 -11.94187 -11.66273 -11.60205 -11.31282 -11.22280 -11.15849 -11.01414 -10.62355 -10.61601 -10.14026 -10.09457 -10.00288 -9.60570 -9.00248 -8.65613 -8.30433 -8.20750 -6.33734 -3.85486 1.90213 2.12736 2.42473 2.87206 2.99721 3.04591 3.12979 3.30508 3.69503 3.89202 3.95582 4.07777 4.22200 4.25229 4.35350 4.40304 4.42535 4.75103 4.94251 4.97212 5.03457 5.13655 5.14705 5.23166 5.29892 5.34270 5.45936 5.55589 5.57101 5.63061 5.68578 5.73451 5.86776 5.91261 6.04649 6.30427 6.82388 6.97412 7.07960 7.42628 7.54844 7.69659 7.75020 8.11213 8.56323 8.91916 9.39127 9.78656 10.79286 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.027064 B = 0.002211 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.342493 B =12663.091151 C =12724.428819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.041 3.959 3 Si 0.880 3.120 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.270 1.270 7 C -0.306 4.306 8 H 0.120 0.880 9 N -0.590 5.590 10 C 0.449 3.551 11 O -0.564 6.564 12 C 0.049 3.951 13 N -0.657 5.657 14 C 0.074 3.926 15 H 0.061 0.939 16 C -0.124 4.124 17 C 0.094 3.906 18 N -0.605 5.605 19 C 0.570 3.430 20 O -0.528 6.528 21 C -0.199 4.199 22 C 0.566 3.434 23 N -0.844 5.844 24 O -0.531 6.531 25 C -0.126 4.126 26 C -0.128 4.128 27 C 0.108 3.892 28 H 0.274 0.726 29 H 0.371 0.629 30 H 0.047 0.953 31 H 0.089 0.911 32 H 0.354 0.646 33 H 0.090 0.910 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.073 0.927 37 H 0.406 0.594 38 H 0.407 0.593 39 H 0.115 0.885 40 H 0.109 0.891 41 H 0.117 0.883 42 H 0.108 0.892 43 H 0.072 0.928 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.742 -10.104 -2.255 28.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.162 4.162 3 Si 0.707 3.293 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.195 1.195 7 C -0.434 4.434 8 H 0.137 0.863 9 N -0.229 5.229 10 C 0.235 3.765 11 O -0.446 6.446 12 C -0.084 4.084 13 N -0.290 5.290 14 C -0.037 4.037 15 H 0.079 0.921 16 C -0.162 4.162 17 C -0.029 4.029 18 N -0.339 5.339 19 C 0.357 3.643 20 O -0.404 6.404 21 C -0.205 4.205 22 C 0.349 3.651 23 N -0.407 5.407 24 O -0.407 6.407 25 C -0.163 4.163 26 C -0.166 4.166 27 C -0.014 4.014 28 H 0.084 0.916 29 H 0.203 0.797 30 H 0.065 0.935 31 H 0.107 0.893 32 H 0.175 0.825 33 H 0.108 0.892 34 H 0.103 0.897 35 H 0.103 0.897 36 H 0.091 0.909 37 H 0.235 0.765 38 H 0.239 0.761 39 H 0.134 0.866 40 H 0.127 0.873 41 H 0.135 0.865 42 H 0.126 0.874 43 H 0.090 0.910 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 26.321 -10.722 -2.903 28.569 hybrid contribution 0.282 1.452 0.865 1.714 sum 26.603 -9.270 -2.038 28.245 Atomic orbital electron populations 1.69626 1.05649 1.27531 1.49220 1.25049 0.95509 0.98013 0.97621 0.86661 0.79722 0.84008 0.78914 1.19571 1.20178 1.19539 1.19427 0.79204 0.96648 1.48140 0.86270 1.42202 1.07563 1.06144 1.66996 1.19659 0.88099 0.84601 0.84166 1.90574 1.69389 1.30918 1.53732 1.21754 0.95186 0.90042 1.01437 1.60126 1.04277 1.13144 1.51473 1.22560 0.89155 0.95382 0.96567 0.92081 1.22887 0.94657 1.01414 0.97261 1.22528 0.98361 0.88663 0.93301 1.48263 1.30820 1.18326 1.36467 1.18657 0.80794 0.80104 0.84773 1.90745 1.67588 1.48521 1.33569 1.21433 0.91762 1.12727 0.94624 1.18962 0.78432 0.79657 0.88084 1.43762 1.46171 1.34596 1.16194 1.90774 1.57477 1.49369 1.43033 1.23115 0.94158 0.95330 1.03711 1.23120 0.93182 0.95624 1.04628 1.22070 0.87958 0.96883 0.94538 0.91581 0.79677 0.93504 0.89311 0.82483 0.89151 0.89732 0.89719 0.90912 0.76464 0.76100 0.86645 0.87270 0.86464 0.87354 0.90991 0.89842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.54 13.96 55.50 0.77 -24.77 16 2 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 3 Si 0.88 19.08 27.74 -169.99 -4.71 14.36 16 4 H -0.27 -5.75 7.11 56.52 0.40 -5.34 16 5 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 6 H -0.27 -5.29 6.52 56.52 0.37 -4.92 16 7 C -0.31 -8.55 10.16 -14.94 -0.15 -8.70 16 8 H 0.12 3.83 7.39 -52.48 -0.39 3.44 16 9 N -0.59 -13.74 5.09 -10.96 -0.06 -13.80 16 10 C 0.45 9.88 7.82 -10.98 -0.09 9.80 16 11 O -0.56 -14.86 15.78 5.55 0.09 -14.77 16 12 C 0.05 0.75 6.02 -4.97 -0.03 0.72 16 13 N -0.66 -9.37 5.93 -106.05 -0.63 -10.00 16 14 C 0.07 0.79 3.24 -65.88 -0.21 0.58 16 15 H 0.06 0.58 7.90 -51.93 -0.41 0.17 16 16 C -0.12 -1.21 6.71 -24.58 -0.16 -1.38 16 17 C 0.09 0.84 6.74 -2.53 -0.02 0.83 16 18 N -0.61 -6.28 3.33 -170.51 -0.57 -6.85 16 19 C 0.57 6.25 7.05 -10.99 -0.08 6.17 16 20 O -0.53 -7.27 17.08 5.55 0.09 -7.18 16 21 C -0.20 -1.72 1.48 -156.81 -0.23 -1.95 16 22 C 0.57 5.37 6.40 -10.99 -0.07 5.29 16 23 N -0.84 -5.92 8.85 31.22 0.28 -5.64 16 24 O -0.53 -6.51 16.67 5.55 0.09 -6.42 16 25 C -0.13 -0.82 9.76 -26.69 -0.26 -1.08 16 26 C -0.13 -0.86 9.75 -26.69 -0.26 -1.12 16 27 C 0.11 1.17 6.40 -3.06 -0.02 1.15 16 28 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 29 H 0.37 7.53 5.76 -40.82 -0.24 7.29 16 30 H 0.05 0.62 8.09 -51.93 -0.42 0.20 16 31 H 0.09 1.21 8.13 -51.93 -0.42 0.79 16 32 H 0.35 5.29 8.15 -39.29 -0.32 4.97 16 33 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 34 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.08 0.82 6.01 -51.93 -0.31 0.51 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.41 2.38 8.83 -40.82 -0.36 2.02 16 38 H 0.41 2.34 8.93 -40.82 -0.36 1.98 16 39 H 0.12 0.76 8.02 -51.93 -0.42 0.35 16 40 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.12 0.77 7.86 -51.93 -0.41 0.36 16 42 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.08 1.02 7.97 -51.93 -0.41 0.61 16 LS Contribution 372.38 15.07 5.61 5.61 Total: -1.00 -35.71 372.38 -6.88 -42.60 By element: Atomic # 1 Polarization: 21.69 SS G_CDS: -6.18 Total: 15.52 kcal Atomic # 6 Polarization: 13.02 SS G_CDS: -1.68 Total: 11.34 kcal Atomic # 7 Polarization: -60.86 SS G_CDS: -0.20 Total: -61.06 kcal Atomic # 8 Polarization: -28.64 SS G_CDS: 0.28 Total: -28.37 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -4.71 Total: 14.36 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -35.71 -6.88 -42.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185289779.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.677 kcal (2) G-P(sol) polarization free energy of solvation -35.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds