Wall clock time and date at job start Fri Apr 10 2020 18:32:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86799 * 120.00020 * 2 1 4 4 H 1.48502 * 109.47105 * 270.00224 * 3 2 1 5 5 H 1.48501 * 109.47056 * 29.99953 * 3 2 1 6 6 H 1.48497 * 109.47011 * 149.99789 * 3 2 1 7 7 C 1.38940 * 119.99968 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00082 * 359.97438 * 7 2 1 9 9 N 1.37098 * 120.00374 * 180.02562 * 7 2 1 10 10 C 1.34773 * 120.00327 * 179.97438 * 9 7 2 11 11 O 1.21289 * 120.00250 * 359.97438 * 10 9 7 12 12 C 1.50704 * 119.99777 * 180.02562 * 10 9 7 13 13 N 1.46905 * 109.46986 * 179.97438 * 12 10 9 14 14 C 1.46890 * 111.00016 * 179.97438 * 13 12 10 15 15 H 1.09006 * 110.64586 * 36.69084 * 14 13 12 16 16 C 1.55158 * 110.72466 * 273.55163 * 14 13 12 17 17 C 1.54916 * 101.58013 * 206.13643 * 16 14 13 18 18 N 1.47425 * 104.83392 * 37.00522 * 17 16 14 19 19 C 1.34776 * 125.64469 * 155.91634 * 18 17 16 20 20 O 1.21284 * 119.99800 * 172.46841 * 19 18 17 21 21 C 1.50701 * 120.00436 * 352.46697 * 19 18 17 22 22 C 1.50698 * 115.54810 * 292.93589 * 21 19 18 23 23 N 1.34777 * 120.00163 * 302.66680 * 22 21 19 24 24 O 1.21283 * 120.00343 * 122.66677 * 22 21 19 25 25 C 1.52997 * 117.50212 * 147.26610 * 21 19 18 26 26 C 1.52999 * 117.49898 * 78.59955 * 21 19 18 27 27 C 1.47016 * 108.70450 * 335.87252 * 18 17 16 28 28 H 0.97005 * 119.99874 * 359.97438 * 1 2 3 29 29 H 0.97004 * 119.99707 * 359.97438 * 9 7 2 30 30 H 1.09002 * 109.46994 * 60.00201 * 12 10 9 31 31 H 1.09000 * 109.47382 * 299.99701 * 12 10 9 32 32 H 1.00902 * 110.99869 * 303.95605 * 13 12 10 33 33 H 1.08998 * 111.00160 * 324.20551 * 16 14 13 34 34 H 1.08998 * 111.00831 * 88.01911 * 16 14 13 35 35 H 1.09006 * 110.36283 * 155.84430 * 17 16 14 36 36 H 1.08997 * 110.36619 * 278.05459 * 17 16 14 37 37 H 0.96996 * 119.99731 * 354.99748 * 23 22 21 38 38 H 0.97000 * 119.99928 * 175.00060 * 23 22 21 39 39 H 1.09005 * 117.49755 * 359.97438 * 25 21 19 40 40 H 1.09000 * 117.50015 * 145.02366 * 25 21 19 41 41 H 1.08994 * 117.50281 * 214.97692 * 26 21 19 42 42 H 1.09002 * 117.49711 * 0.02562 * 26 21 19 43 43 H 1.08997 * 109.88546 * 241.64052 * 27 18 17 44 44 H 1.09004 * 109.88135 * 120.47550 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4456 2.6527 0.7000 6 1 3.5457 1.4401 0.7001 7 6 2.0089 -1.2033 -0.0005 8 1 1.4689 -2.1386 -0.0005 9 7 3.3798 -1.2034 0.0000 10 6 4.0537 -2.3705 0.0000 11 8 3.4473 -3.4209 0.0000 12 6 5.5607 -2.3705 0.0012 13 7 6.0504 -3.7555 0.0015 14 6 7.5188 -3.7947 0.0021 15 1 7.9246 -2.9872 0.6116 16 6 8.0706 -3.7197 -1.4461 17 6 9.4363 -4.4355 -1.2961 18 7 9.1879 -5.5244 -0.3338 19 6 9.9057 -6.6604 -0.2308 20 8 9.6988 -7.4275 0.6856 21 6 10.9655 -6.9777 -1.2542 22 6 10.4608 -7.2638 -2.6450 23 7 9.5722 -8.2565 -2.8485 24 8 10.8544 -6.6009 -3.5813 25 6 12.1995 -7.7467 -0.7783 26 6 12.3103 -6.2597 -1.1245 27 6 8.0283 -5.1654 0.4956 28 1 -0.4850 0.8401 0.0004 29 1 3.8649 -0.3633 0.0004 30 1 5.9234 -1.8571 0.8917 31 1 5.9248 -1.8563 -0.8883 32 1 5.6743 -4.2718 0.7826 33 1 7.4226 -4.2560 -2.1393 34 1 8.2038 -2.6846 -1.7605 35 1 9.7586 -4.8424 -2.2546 36 1 10.1851 -3.7460 -0.9063 37 1 9.3125 -8.8332 -2.1132 38 1 9.1924 -8.3941 -3.7304 39 1 12.2451 -8.0229 0.2752 40 1 12.6467 -8.4593 -1.4714 41 1 12.8303 -5.9948 -2.0450 42 1 12.4287 -5.5582 -0.2986 43 1 8.3279 -5.0949 1.5412 44 1 7.2450 -5.9148 0.3819 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185289779.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:38 Heat of formation + Delta-G solvation = -97.179293 kcal Electronic energy + Delta-G solvation = -27254.264727 eV Core-core repulsion = 23206.397212 eV Total energy + Delta-G solvation = -4047.867515 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.94580 -40.50925 -40.12433 -38.95782 -36.96534 -36.25151 -35.60915 -34.72446 -33.74441 -31.78514 -30.25970 -28.13960 -26.61788 -25.31891 -24.46562 -23.50369 -22.45766 -21.54505 -21.27926 -20.31467 -20.13362 -18.98353 -18.17980 -17.83701 -17.61466 -17.23454 -16.97136 -16.58110 -16.48041 -16.06815 -15.64472 -15.44155 -15.27457 -15.06906 -14.79879 -14.59131 -14.40110 -14.31853 -13.92915 -13.78720 -13.51933 -13.23582 -12.88189 -12.64449 -12.59809 -12.40604 -12.24989 -12.15036 -11.96957 -11.89172 -11.74255 -11.50689 -11.33208 -10.92007 -10.81234 -10.44342 -10.24617 -9.83409 -9.40444 -8.40778 -6.02073 1.12713 1.31005 1.37172 1.37683 1.45901 1.66738 1.96444 2.24086 2.27177 2.67302 2.72913 3.15261 3.16378 3.36531 3.58026 3.62723 3.63571 3.69478 3.80047 4.11793 4.14330 4.25624 4.32247 4.45777 4.52138 4.56515 4.61815 4.63905 4.72001 4.77229 4.83640 4.93802 5.08885 5.13476 5.22285 5.53192 5.70848 5.89606 6.02582 6.19300 6.25243 6.32320 6.59940 6.87114 6.88630 7.10139 7.40222 7.97139 8.76893 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.027064 B = 0.002211 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.342493 B =12663.091151 C =12724.428819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.017 4.017 3 Si 0.967 3.033 4 H -0.257 1.257 5 H -0.277 1.277 6 H -0.228 1.228 7 C -0.329 4.329 8 H 0.053 0.947 9 N -0.590 5.590 10 C 0.448 3.552 11 O -0.616 6.616 12 C 0.064 3.936 13 N -0.677 5.677 14 C 0.082 3.918 15 H 0.089 0.911 16 C -0.121 4.121 17 C 0.099 3.901 18 N -0.606 5.606 19 C 0.570 3.430 20 O -0.563 6.563 21 C -0.213 4.213 22 C 0.565 3.435 23 N -0.835 5.835 24 O -0.562 6.562 25 C -0.115 4.115 26 C -0.116 4.116 27 C 0.109 3.891 28 H 0.279 0.721 29 H 0.391 0.609 30 H 0.083 0.917 31 H 0.118 0.882 32 H 0.347 0.653 33 H 0.066 0.934 34 H 0.107 0.893 35 H 0.077 0.923 36 H 0.099 0.901 37 H 0.412 0.588 38 H 0.413 0.587 39 H 0.115 0.885 40 H 0.123 0.877 41 H 0.121 0.879 42 H 0.119 0.881 43 H 0.077 0.923 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.590 -7.775 -2.200 31.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.216 4.216 3 Si 0.787 3.213 4 H -0.182 1.182 5 H -0.202 1.202 6 H -0.151 1.151 7 C -0.458 4.458 8 H 0.072 0.928 9 N -0.232 5.232 10 C 0.236 3.764 11 O -0.501 6.501 12 C -0.068 4.068 13 N -0.310 5.310 14 C -0.028 4.028 15 H 0.107 0.893 16 C -0.159 4.159 17 C -0.023 4.023 18 N -0.338 5.338 19 C 0.358 3.642 20 O -0.441 6.441 21 C -0.219 4.219 22 C 0.349 3.651 23 N -0.398 5.398 24 O -0.440 6.440 25 C -0.153 4.153 26 C -0.154 4.154 27 C -0.014 4.014 28 H 0.088 0.912 29 H 0.226 0.774 30 H 0.101 0.899 31 H 0.136 0.864 32 H 0.167 0.833 33 H 0.085 0.915 34 H 0.126 0.874 35 H 0.096 0.904 36 H 0.117 0.883 37 H 0.242 0.758 38 H 0.246 0.754 39 H 0.133 0.867 40 H 0.142 0.858 41 H 0.139 0.861 42 H 0.138 0.862 43 H 0.095 0.905 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 30.197 -8.409 -2.858 31.476 hybrid contribution -0.988 0.539 0.839 1.404 sum 29.209 -7.871 -2.019 30.318 Atomic orbital electron populations 1.69816 1.08230 1.29259 1.50314 1.26161 0.96498 1.02872 0.96059 0.85339 0.79548 0.76502 0.79955 1.18155 1.20207 1.15100 1.18991 0.81597 0.94853 1.50357 0.92847 1.42021 1.05753 1.07677 1.67765 1.21020 0.91104 0.83246 0.81072 1.90556 1.71483 1.32888 1.55160 1.21678 0.89298 0.91371 1.04446 1.60102 1.06681 1.12595 1.51638 1.22591 0.86796 0.95814 0.97584 0.89328 1.22883 0.94462 1.02521 0.96078 1.22599 0.98482 0.88368 0.92820 1.48356 1.30367 1.18659 1.36458 1.18999 0.80895 0.79668 0.84686 1.90724 1.68735 1.49529 1.35157 1.21353 0.91879 1.15160 0.93502 1.19105 0.78378 0.79567 0.88087 1.43739 1.45266 1.33946 1.16807 1.90755 1.58728 1.50579 1.43957 1.23224 0.92277 0.95773 1.03995 1.23224 0.91108 0.95926 1.05095 1.21999 0.87724 0.96657 0.95051 0.91171 0.77353 0.89879 0.86366 0.83332 0.91549 0.87431 0.90442 0.88284 0.75756 0.75412 0.86680 0.85843 0.86119 0.86228 0.90475 0.92045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.23 13.96 21.66 0.30 -55.93 16 2 C -0.02 -0.96 5.50 84.92 0.47 -0.49 16 3 Si 0.97 37.94 27.74 68.60 1.90 39.84 16 4 H -0.26 -9.57 7.11 99.48 0.71 -8.86 16 5 H -0.28 -10.87 7.11 99.48 0.71 -10.16 16 6 H -0.23 -7.34 6.52 99.48 0.65 -6.69 16 7 C -0.33 -19.07 10.16 84.04 0.85 -18.22 16 8 H 0.05 3.72 7.39 -2.91 -0.02 3.70 16 9 N -0.59 -27.05 5.09 -306.99 -1.56 -28.61 16 10 C 0.45 19.47 7.82 87.66 0.69 20.16 16 11 O -0.62 -33.66 15.78 -3.06 -0.05 -33.71 16 12 C 0.06 1.76 6.02 85.56 0.52 2.28 16 13 N -0.68 -18.13 5.93 -489.43 -2.90 -21.03 16 14 C 0.08 1.51 3.24 46.11 0.15 1.66 16 15 H 0.09 1.24 7.90 -2.38 -0.02 1.22 16 16 C -0.12 -2.02 6.71 31.99 0.21 -1.81 16 17 C 0.10 1.51 6.74 86.86 0.59 2.10 16 18 N -0.61 -11.62 3.33 -811.78 -2.70 -14.32 16 19 C 0.57 11.90 7.05 87.66 0.62 12.52 16 20 O -0.56 -15.30 17.08 -3.04 -0.05 -15.36 16 21 C -0.21 -3.38 1.48 -53.68 -0.08 -3.46 16 22 C 0.57 10.17 6.40 87.66 0.56 10.73 16 23 N -0.83 -11.21 8.85 -173.53 -1.54 -12.75 16 24 O -0.56 -13.26 16.67 -3.04 -0.05 -13.31 16 25 C -0.12 -1.29 9.76 30.62 0.30 -0.99 16 26 C -0.12 -1.29 9.75 30.62 0.30 -1.00 16 27 C 0.11 2.22 6.40 86.73 0.56 2.78 16 28 H 0.28 15.30 8.31 -92.70 -0.77 14.53 16 29 H 0.39 14.54 5.76 -92.71 -0.53 14.00 16 30 H 0.08 1.77 8.09 -2.39 -0.02 1.75 16 31 H 0.12 2.64 8.13 -2.39 -0.02 2.62 16 32 H 0.35 10.20 8.15 -89.69 -0.73 9.47 16 33 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.08 1.35 6.01 -2.38 -0.01 1.34 16 36 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.41 4.66 8.83 -92.71 -0.82 3.84 16 38 H 0.41 4.55 8.93 -92.71 -0.83 3.72 16 39 H 0.11 1.34 8.02 -2.38 -0.02 1.32 16 40 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.12 1.31 7.86 -2.39 -0.02 1.29 16 42 H 0.12 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 44 H 0.06 1.52 7.97 -2.39 -0.02 1.51 16 Total: -1.00 -84.24 372.38 -2.81 -87.05 By element: Atomic # 1 Polarization: 43.76 SS G_CDS: -1.89 Total: 41.87 kcal Atomic # 6 Polarization: 20.53 SS G_CDS: 5.72 Total: 26.26 kcal Atomic # 7 Polarization: -124.24 SS G_CDS: -8.40 Total: -132.64 kcal Atomic # 8 Polarization: -62.23 SS G_CDS: -0.15 Total: -62.38 kcal Atomic # 14 Polarization: 37.94 SS G_CDS: 1.90 Total: 39.84 kcal Total: -84.24 -2.81 -87.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185289779.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.130 kcal (2) G-P(sol) polarization free energy of solvation -84.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds