Wall clock time and date at job start Fri Apr 10 2020 18:32:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86798 * 119.99666 * 2 1 4 4 H 1.48490 * 109.47339 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47239 * 120.00326 * 3 2 1 6 6 H 1.48504 * 109.46636 * 239.99885 * 3 2 1 7 7 C 1.38951 * 119.99798 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99421 * 180.02562 * 7 2 1 9 9 N 1.37092 * 120.00419 * 0.02562 * 7 2 1 10 10 C 1.34777 * 120.00123 * 180.02562 * 9 7 2 11 11 O 1.21293 * 120.00229 * 359.97438 * 10 9 7 12 12 C 1.50699 * 119.99772 * 179.97438 * 10 9 7 13 13 N 1.46903 * 109.46994 * 179.97438 * 12 10 9 14 14 C 1.46902 * 111.00336 * 179.97438 * 13 12 10 15 15 H 1.09000 * 110.63451 * 36.68654 * 14 13 12 16 16 C 1.55158 * 110.72051 * 273.54846 * 14 13 12 17 17 C 1.54905 * 101.58070 * 206.13080 * 16 14 13 18 18 N 1.47429 * 104.83245 * 37.00954 * 17 16 14 19 19 C 1.34775 * 125.64453 * 155.90352 * 18 17 16 20 20 O 1.21280 * 119.99563 * 179.97438 * 19 18 17 21 21 C 1.50696 * 120.00457 * 359.97438 * 19 18 17 22 22 H 1.09001 * 110.21375 * 40.70484 * 21 19 18 23 23 C 1.54469 * 110.24835 * 278.77147 * 21 19 18 24 24 C 1.54625 * 101.76865 * 215.58467 * 23 21 19 25 25 C 1.51285 * 104.19305 * 24.79548 * 24 23 21 26 26 O 1.21278 * 124.94281 * 163.77666 * 25 24 23 27 27 N 1.34564 * 110.14132 * 343.67546 * 25 24 23 28 28 C 1.47021 * 108.70060 * 335.87353 * 18 17 16 29 29 H 0.96996 * 120.00340 * 359.97438 * 1 2 3 30 30 H 0.97000 * 120.00144 * 0.02562 * 9 7 2 31 31 H 1.08997 * 109.47517 * 299.99470 * 12 10 9 32 32 H 1.09007 * 109.47528 * 60.00096 * 12 10 9 33 33 H 1.00897 * 111.00085 * 303.95661 * 13 12 10 34 34 H 1.08994 * 111.00274 * 324.21072 * 16 14 13 35 35 H 1.09008 * 110.99901 * 88.05633 * 16 14 13 36 36 H 1.09001 * 110.36280 * 155.84813 * 17 16 14 37 37 H 1.09001 * 110.36706 * 278.16960 * 17 16 14 38 38 H 1.09001 * 110.97272 * 333.70169 * 23 21 19 39 39 H 1.09000 * 110.97230 * 97.45924 * 23 21 19 40 40 H 1.08999 * 110.49040 * 143.47722 * 24 23 21 41 41 H 1.09004 * 110.48451 * 266.12061 * 24 23 21 42 42 H 0.96993 * 124.43250 * 179.64222 * 27 25 24 43 43 H 1.09003 * 109.87864 * 241.64136 * 28 18 17 44 44 H 1.08995 * 109.88308 * 120.47644 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 1.2831 2.7464 -0.0006 5 1 3.1018 1.6965 1.2124 6 1 3.1018 1.6964 -1.2126 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9973 -3.5578 0.0016 11 8 3.2103 -3.5579 0.0021 12 6 1.2438 -4.8629 0.0022 13 7 2.1984 -5.9795 0.0027 14 6 1.4982 -7.2709 0.0039 15 1 0.5958 -7.2191 -0.6053 16 6 1.1581 -7.7096 1.4527 17 6 1.0950 -9.2502 1.3044 18 7 2.1618 -9.5808 0.3420 19 6 2.7868 -10.7705 0.2403 20 8 3.6536 -10.9307 -0.5927 21 6 2.4086 -11.9016 1.1614 22 1 1.3272 -11.9337 1.2942 23 6 3.1103 -11.7359 2.5276 24 6 3.4028 -13.2047 2.9121 25 6 3.4523 -13.9323 1.5866 26 8 3.9261 -15.0358 1.4172 27 7 2.8922 -13.1784 0.6230 28 6 2.4303 -8.3978 -0.4887 29 1 -0.4850 0.8400 0.0004 30 1 0.3534 -2.3907 -0.0002 31 1 0.6169 -4.9202 0.8919 32 1 0.6174 -4.9213 -0.8881 33 1 2.8333 -5.9128 -0.7787 34 1 1.9467 -7.4156 2.1452 35 1 0.1947 -7.3075 1.7667 36 1 1.2866 -9.7317 2.2634 37 1 0.1239 -9.5543 0.9136 38 1 4.0350 -11.1680 2.4249 39 1 2.4454 -11.2676 3.2533 40 1 4.3614 -13.2811 3.4253 41 1 2.6022 -13.6024 3.5359 42 1 2.8184 -13.4433 -0.3072 43 1 2.2190 -8.6233 -1.5340 44 1 3.4709 -8.0941 -0.3758 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001187221181.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:42 Heat of formation + Delta-G solvation = -94.317316 kcal Electronic energy + Delta-G solvation = -26731.799582 eV Core-core repulsion = 22684.056172 eV Total energy + Delta-G solvation = -4047.743410 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.29010 -39.86462 -38.51771 -37.79810 -36.50463 -34.90220 -33.86232 -31.84778 -31.33114 -30.94254 -29.71112 -28.27245 -26.07880 -24.21285 -23.76312 -22.73490 -21.02168 -20.73639 -20.00837 -19.29812 -18.06021 -17.95081 -17.71102 -16.73540 -16.35685 -16.13157 -15.76820 -15.33955 -15.02227 -14.75951 -14.56254 -14.20413 -14.09332 -13.86084 -13.76397 -13.66297 -13.28669 -13.21363 -13.06277 -12.87896 -12.41819 -12.26284 -11.87715 -11.76689 -11.68924 -11.51495 -11.31960 -11.12847 -10.99950 -10.49237 -10.47913 -10.29555 -10.26049 -9.55219 -9.54957 -9.05161 -8.56522 -8.23312 -8.01968 -6.46765 -3.87759 2.08349 2.09927 2.40258 2.96818 3.16758 3.22986 3.27277 3.72093 3.78894 3.83949 3.96043 3.99870 4.21439 4.29620 4.32140 4.38677 4.47390 4.78469 4.86530 4.90464 5.01256 5.06713 5.15239 5.18531 5.23974 5.25645 5.35980 5.49273 5.55884 5.64693 5.71056 5.83856 5.87049 5.98875 6.19812 6.25693 6.55416 7.03225 7.06790 7.46757 7.50431 7.65879 7.81732 8.00451 8.55270 9.12597 9.48151 9.99313 10.70724 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.040848 B = 0.001834 C = 0.001825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.295334 B =15266.154062 C =15335.666917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.023 3.977 3 Si 0.931 3.069 4 H -0.284 1.284 5 H -0.273 1.273 6 H -0.274 1.274 7 C -0.301 4.301 8 H 0.103 0.897 9 N -0.562 5.562 10 C 0.439 3.561 11 O -0.583 6.583 12 C 0.052 3.948 13 N -0.657 5.657 14 C 0.074 3.926 15 H 0.061 0.939 16 C -0.124 4.124 17 C 0.094 3.906 18 N -0.609 5.609 19 C 0.519 3.481 20 O -0.527 6.527 21 C 0.118 3.882 22 H 0.106 0.894 23 C -0.122 4.122 24 C -0.154 4.154 25 C 0.523 3.477 26 O -0.530 6.530 27 N -0.711 5.711 28 C 0.108 3.892 29 H 0.272 0.728 30 H 0.392 0.608 31 H 0.087 0.913 32 H 0.045 0.955 33 H 0.354 0.646 34 H 0.092 0.908 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.073 0.927 38 H 0.091 0.909 39 H 0.103 0.897 40 H 0.108 0.892 41 H 0.110 0.890 42 H 0.416 0.584 43 H 0.070 0.930 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.459 -21.824 5.638 22.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.758 3.242 4 H -0.210 1.210 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.430 4.430 8 H 0.121 0.879 9 N -0.199 5.199 10 C 0.224 3.776 11 O -0.467 6.467 12 C -0.081 4.081 13 N -0.291 5.291 14 C -0.037 4.037 15 H 0.078 0.922 16 C -0.163 4.163 17 C -0.029 4.029 18 N -0.344 5.344 19 C 0.306 3.694 20 O -0.403 6.403 21 C 0.009 3.991 22 H 0.124 0.876 23 C -0.160 4.160 24 C -0.194 4.194 25 C 0.310 3.690 26 O -0.406 6.406 27 N -0.367 5.367 28 C -0.015 4.015 29 H 0.082 0.918 30 H 0.225 0.775 31 H 0.105 0.895 32 H 0.063 0.937 33 H 0.174 0.826 34 H 0.110 0.890 35 H 0.103 0.897 36 H 0.099 0.901 37 H 0.092 0.908 38 H 0.109 0.891 39 H 0.121 0.879 40 H 0.127 0.873 41 H 0.129 0.871 42 H 0.256 0.744 43 H 0.088 0.912 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -2.908 -22.361 5.873 23.302 hybrid contribution -0.790 0.978 -1.386 1.871 sum -3.698 -21.383 4.487 22.160 Atomic orbital electron populations 1.69598 1.05936 1.28334 1.50395 1.25266 0.95647 0.99756 0.97210 0.85908 0.78768 0.80387 0.79116 1.20963 1.19850 1.19904 1.19657 0.93369 0.82212 1.47796 0.87942 1.41848 1.09191 1.04596 1.64217 1.19765 0.88389 0.84684 0.84751 1.90537 1.13729 1.87011 1.55438 1.21714 0.94251 0.90812 1.01309 1.60148 1.18497 0.99045 1.51388 1.22551 0.95459 0.89239 0.96458 0.92153 1.22894 1.03559 0.92316 0.97503 1.22533 0.90533 0.97117 0.92753 1.48354 1.38184 1.11366 1.36534 1.20321 0.81738 0.82554 0.84817 1.90774 1.31054 1.81721 1.36727 1.21547 1.00421 0.83313 0.93851 0.87616 1.22633 1.02432 0.97223 0.93750 1.22378 1.05911 0.94728 0.96402 1.20887 0.75974 0.84979 0.87195 1.90778 1.45678 1.19509 1.84617 1.45999 1.61171 1.17194 1.12355 1.22066 1.01037 0.84039 0.94376 0.91781 0.77457 0.89451 0.93658 0.82584 0.88965 0.89657 0.90109 0.90846 0.89063 0.87885 0.87346 0.87149 0.74422 0.91187 0.89836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.84 13.05 55.50 0.72 -23.12 16 2 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 20.60 29.55 -169.99 -5.02 15.58 16 4 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 6 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 7 C -0.30 -8.17 9.68 -14.94 -0.14 -8.31 16 8 H 0.10 2.93 7.16 -52.49 -0.38 2.55 16 9 N -0.56 -13.66 5.29 -10.96 -0.06 -13.72 16 10 C 0.44 9.81 7.82 -10.99 -0.09 9.72 16 11 O -0.58 -15.26 15.78 5.55 0.09 -15.17 16 12 C 0.05 0.81 6.02 -4.97 -0.03 0.78 16 13 N -0.66 -9.25 5.93 -106.05 -0.63 -9.87 16 14 C 0.07 0.73 3.24 -65.88 -0.21 0.52 16 15 H 0.06 0.55 7.89 -51.93 -0.41 0.14 16 16 C -0.12 -0.96 6.71 -24.58 -0.17 -1.12 16 17 C 0.09 0.51 6.43 -2.53 -0.02 0.49 16 18 N -0.61 -5.17 3.33 -170.53 -0.57 -5.73 16 19 C 0.52 5.00 7.04 -10.99 -0.08 4.93 16 20 O -0.53 -7.43 16.89 5.56 0.09 -7.34 16 21 C 0.12 0.73 3.13 -68.17 -0.21 0.52 16 22 H 0.11 0.36 7.74 -51.93 -0.40 -0.04 16 23 C -0.12 -0.55 6.28 -25.11 -0.16 -0.70 16 24 C -0.15 -0.80 6.86 -26.74 -0.18 -0.98 16 25 C 0.52 5.00 8.43 -10.79 -0.09 4.90 16 26 O -0.53 -7.38 18.03 5.56 0.10 -7.28 16 27 N -0.71 -5.88 5.47 -53.85 -0.29 -6.18 16 28 C 0.11 1.09 6.39 -3.07 -0.02 1.07 16 29 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 30 H 0.39 9.04 7.90 -40.82 -0.32 8.72 16 31 H 0.09 1.23 8.13 -51.93 -0.42 0.81 16 32 H 0.05 0.64 8.09 -51.93 -0.42 0.22 16 33 H 0.35 5.31 8.15 -39.29 -0.32 4.99 16 34 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.08 0.56 8.14 -51.92 -0.42 0.14 16 36 H 0.08 0.25 6.61 -51.93 -0.34 -0.09 16 37 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 38 H 0.09 0.54 7.91 -51.93 -0.41 0.13 16 39 H 0.10 0.17 7.42 -51.93 -0.39 -0.22 16 40 H 0.11 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.11 0.34 8.14 -51.93 -0.42 -0.09 16 42 H 0.42 3.53 8.95 -40.82 -0.37 3.16 16 43 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 44 H 0.08 1.01 7.97 -51.93 -0.41 0.59 16 LS Contribution 369.25 15.07 5.56 5.56 Total: -1.00 -35.99 369.25 -7.76 -43.75 By element: Atomic # 1 Polarization: 17.48 SS G_CDS: -6.26 Total: 11.22 kcal Atomic # 6 Polarization: 13.80 SS G_CDS: -1.49 Total: 12.30 kcal Atomic # 7 Polarization: -57.79 SS G_CDS: -0.82 Total: -58.62 kcal Atomic # 8 Polarization: -30.07 SS G_CDS: 0.28 Total: -29.79 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -35.99 -7.76 -43.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001187221181.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.571 kcal (2) G-P(sol) polarization free energy of solvation -35.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds