Wall clock time and date at job start Fri Apr 10 2020 18:32:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86798 * 119.99666 * 2 1 4 4 H 1.48490 * 109.47339 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47239 * 120.00326 * 3 2 1 6 6 H 1.48504 * 109.46636 * 239.99885 * 3 2 1 7 7 C 1.38951 * 119.99798 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99421 * 180.02562 * 7 2 1 9 9 N 1.37092 * 120.00419 * 0.02562 * 7 2 1 10 10 C 1.34777 * 120.00123 * 180.02562 * 9 7 2 11 11 O 1.21293 * 120.00229 * 359.97438 * 10 9 7 12 12 C 1.50699 * 119.99772 * 179.97438 * 10 9 7 13 13 N 1.46903 * 109.46994 * 179.97438 * 12 10 9 14 14 C 1.46902 * 111.00336 * 179.97438 * 13 12 10 15 15 H 1.09000 * 110.63451 * 36.68654 * 14 13 12 16 16 C 1.55158 * 110.72051 * 273.54846 * 14 13 12 17 17 C 1.54905 * 101.58070 * 206.13080 * 16 14 13 18 18 N 1.47429 * 104.83245 * 37.00954 * 17 16 14 19 19 C 1.34775 * 125.64453 * 155.90352 * 18 17 16 20 20 O 1.21280 * 119.99563 * 179.97438 * 19 18 17 21 21 C 1.50696 * 120.00457 * 359.97438 * 19 18 17 22 22 H 1.09001 * 110.21375 * 40.70484 * 21 19 18 23 23 C 1.54469 * 110.24835 * 278.77147 * 21 19 18 24 24 C 1.54625 * 101.76865 * 215.58467 * 23 21 19 25 25 C 1.51285 * 104.19305 * 24.79548 * 24 23 21 26 26 O 1.21278 * 124.94281 * 163.77666 * 25 24 23 27 27 N 1.34564 * 110.14132 * 343.67546 * 25 24 23 28 28 C 1.47021 * 108.70060 * 335.87353 * 18 17 16 29 29 H 0.96996 * 120.00340 * 359.97438 * 1 2 3 30 30 H 0.97000 * 120.00144 * 0.02562 * 9 7 2 31 31 H 1.08997 * 109.47517 * 299.99470 * 12 10 9 32 32 H 1.09007 * 109.47528 * 60.00096 * 12 10 9 33 33 H 1.00897 * 111.00085 * 303.95661 * 13 12 10 34 34 H 1.08994 * 111.00274 * 324.21072 * 16 14 13 35 35 H 1.09008 * 110.99901 * 88.05633 * 16 14 13 36 36 H 1.09001 * 110.36280 * 155.84813 * 17 16 14 37 37 H 1.09001 * 110.36706 * 278.16960 * 17 16 14 38 38 H 1.09001 * 110.97272 * 333.70169 * 23 21 19 39 39 H 1.09000 * 110.97230 * 97.45924 * 23 21 19 40 40 H 1.08999 * 110.49040 * 143.47722 * 24 23 21 41 41 H 1.09004 * 110.48451 * 266.12061 * 24 23 21 42 42 H 0.96993 * 124.43250 * 179.64222 * 27 25 24 43 43 H 1.09003 * 109.87864 * 241.64136 * 28 18 17 44 44 H 1.08995 * 109.88308 * 120.47644 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 1.2831 2.7464 -0.0006 5 1 3.1018 1.6965 1.2124 6 1 3.1018 1.6964 -1.2126 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9973 -3.5578 0.0016 11 8 3.2103 -3.5579 0.0021 12 6 1.2438 -4.8629 0.0022 13 7 2.1984 -5.9795 0.0027 14 6 1.4982 -7.2709 0.0039 15 1 0.5958 -7.2191 -0.6053 16 6 1.1581 -7.7096 1.4527 17 6 1.0950 -9.2502 1.3044 18 7 2.1618 -9.5808 0.3420 19 6 2.7868 -10.7705 0.2403 20 8 3.6536 -10.9307 -0.5927 21 6 2.4086 -11.9016 1.1614 22 1 1.3272 -11.9337 1.2942 23 6 3.1103 -11.7359 2.5276 24 6 3.4028 -13.2047 2.9121 25 6 3.4523 -13.9323 1.5866 26 8 3.9261 -15.0358 1.4172 27 7 2.8922 -13.1784 0.6230 28 6 2.4303 -8.3978 -0.4887 29 1 -0.4850 0.8400 0.0004 30 1 0.3534 -2.3907 -0.0002 31 1 0.6169 -4.9202 0.8919 32 1 0.6174 -4.9213 -0.8881 33 1 2.8333 -5.9128 -0.7787 34 1 1.9467 -7.4156 2.1452 35 1 0.1947 -7.3075 1.7667 36 1 1.2866 -9.7317 2.2634 37 1 0.1239 -9.5543 0.9136 38 1 4.0350 -11.1680 2.4249 39 1 2.4454 -11.2676 3.2533 40 1 4.3614 -13.2811 3.4253 41 1 2.6022 -13.6024 3.5359 42 1 2.8184 -13.4433 -0.3072 43 1 2.2190 -8.6233 -1.5340 44 1 3.4709 -8.0941 -0.3758 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001187221181.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:42 Heat of formation + Delta-G solvation = -125.686060 kcal Electronic energy + Delta-G solvation = -26733.159833 eV Core-core repulsion = 22684.056172 eV Total energy + Delta-G solvation = -4049.103661 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.93933 -40.62976 -40.07739 -38.81655 -37.25141 -36.20561 -35.55764 -33.25967 -32.36843 -31.79196 -30.38397 -29.12658 -27.51512 -25.60971 -24.57210 -23.22442 -21.64810 -21.49491 -21.13004 -20.57023 -19.88840 -18.69187 -18.35886 -17.81285 -17.43868 -16.89957 -16.81656 -16.54795 -16.35679 -15.98537 -15.54781 -15.48118 -15.20404 -14.75394 -14.68814 -14.43955 -14.23153 -13.95434 -13.86008 -13.65260 -13.48436 -13.45791 -13.15165 -12.87941 -12.82065 -12.48010 -12.41177 -12.13651 -12.11396 -12.05689 -11.76669 -11.49220 -11.25826 -11.03172 -10.33806 -10.22258 -10.00195 -9.75345 -9.36859 -8.45727 -5.94016 1.38190 1.40447 1.41039 1.42982 1.53157 1.74470 2.07440 2.29843 2.37268 2.93218 3.17213 3.21989 3.29884 3.48711 3.54421 3.71109 3.73939 3.98415 4.03897 4.16775 4.30863 4.37392 4.41246 4.47466 4.53871 4.63455 4.68840 4.78289 4.81030 4.84654 4.98154 5.01327 5.06478 5.23318 5.36188 5.42244 5.64306 5.89649 5.90374 6.11495 6.30386 6.41590 6.61764 6.95249 7.12234 7.14248 7.58268 8.14043 8.71163 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.040848 B = 0.001834 C = 0.001825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.295334 B =15266.154062 C =15335.666917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.011 4.011 3 Si 0.990 3.010 4 H -0.270 1.270 5 H -0.273 1.273 6 H -0.274 1.274 7 C -0.335 4.335 8 H 0.077 0.923 9 N -0.572 5.572 10 C 0.435 3.565 11 O -0.627 6.627 12 C 0.069 3.931 13 N -0.674 5.674 14 C 0.076 3.924 15 H 0.079 0.921 16 C -0.122 4.122 17 C 0.094 3.906 18 N -0.606 5.606 19 C 0.514 3.486 20 O -0.585 6.585 21 C 0.123 3.877 22 H 0.150 0.850 23 C -0.116 4.116 24 C -0.143 4.143 25 C 0.510 3.490 26 O -0.587 6.587 27 N -0.714 5.714 28 C 0.109 3.891 29 H 0.278 0.722 30 H 0.398 0.602 31 H 0.113 0.887 32 H 0.070 0.930 33 H 0.343 0.657 34 H 0.073 0.927 35 H 0.105 0.895 36 H 0.115 0.885 37 H 0.102 0.898 38 H 0.072 0.928 39 H 0.147 0.853 40 H 0.111 0.889 41 H 0.143 0.857 42 H 0.410 0.590 43 H 0.065 0.935 44 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.091 -22.069 7.495 24.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.211 4.211 3 Si 0.814 3.186 4 H -0.195 1.195 5 H -0.198 1.198 6 H -0.199 1.199 7 C -0.464 4.464 8 H 0.095 0.905 9 N -0.209 5.209 10 C 0.223 3.777 11 O -0.513 6.513 12 C -0.063 4.063 13 N -0.307 5.307 14 C -0.034 4.034 15 H 0.097 0.903 16 C -0.161 4.161 17 C -0.027 4.027 18 N -0.339 5.339 19 C 0.303 3.697 20 O -0.465 6.465 21 C 0.014 3.986 22 H 0.167 0.833 23 C -0.153 4.153 24 C -0.183 4.183 25 C 0.299 3.701 26 O -0.467 6.467 27 N -0.368 5.368 28 C -0.015 4.015 29 H 0.087 0.913 30 H 0.232 0.768 31 H 0.131 0.869 32 H 0.087 0.913 33 H 0.162 0.838 34 H 0.092 0.908 35 H 0.124 0.876 36 H 0.133 0.867 37 H 0.120 0.880 38 H 0.091 0.909 39 H 0.165 0.835 40 H 0.129 0.871 41 H 0.160 0.840 42 H 0.248 0.752 43 H 0.083 0.917 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.616 -22.580 7.764 24.529 hybrid contribution 0.046 1.046 -2.010 2.267 sum -5.570 -21.534 5.754 22.975 Atomic orbital electron populations 1.69649 1.06680 1.29334 1.50217 1.25987 0.96546 1.02262 0.96324 0.85028 0.77802 0.76897 0.78860 1.19464 1.19780 1.19933 1.19602 0.92659 0.84147 1.50027 0.90507 1.41910 1.09365 1.04645 1.65020 1.20969 0.88256 0.86320 0.82147 1.90508 1.16093 1.88007 1.56713 1.21562 0.93761 0.87443 1.03547 1.60174 1.18813 1.00421 1.51252 1.22647 0.95280 0.86754 0.98701 0.90287 1.22911 1.03884 0.94126 0.95131 1.22833 0.90615 0.95544 0.93729 1.48434 1.38513 1.10413 1.36553 1.21020 0.80782 0.83404 0.84522 1.90752 1.33654 1.82752 1.39328 1.21854 1.02776 0.80607 0.93334 0.83317 1.22753 1.02498 0.96670 0.93419 1.22428 1.07344 0.94468 0.94039 1.21734 0.74842 0.84495 0.89033 1.90739 1.48109 1.22093 1.85760 1.46201 1.60515 1.17918 1.12180 1.21900 0.99630 0.85208 0.94756 0.91291 0.76831 0.86924 0.91263 0.83797 0.90776 0.87628 0.86684 0.88004 0.90891 0.83508 0.87085 0.83960 0.75159 0.91663 0.92721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -47.99 13.05 21.66 0.28 -47.71 16 2 C -0.01 -0.58 5.50 84.93 0.47 -0.11 16 3 Si 0.99 42.05 29.55 68.60 2.03 44.08 16 4 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 5 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 6 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 7 C -0.33 -18.54 9.68 84.04 0.81 -17.73 16 8 H 0.08 4.57 7.16 -2.91 -0.02 4.55 16 9 N -0.57 -28.04 5.29 -306.99 -1.62 -29.67 16 10 C 0.44 19.57 7.82 87.66 0.69 20.25 16 11 O -0.63 -33.74 15.78 -3.07 -0.05 -33.79 16 12 C 0.07 2.05 6.02 85.56 0.52 2.56 16 13 N -0.67 -18.38 5.93 -489.44 -2.90 -21.28 16 14 C 0.08 1.34 3.24 46.10 0.15 1.49 16 15 H 0.08 1.15 7.89 -2.39 -0.02 1.13 16 16 C -0.12 -1.43 6.71 31.99 0.21 -1.21 16 17 C 0.09 0.56 6.43 86.85 0.56 1.12 16 18 N -0.61 -8.90 3.33 -811.82 -2.70 -11.60 16 19 C 0.51 9.22 7.04 87.66 0.62 9.84 16 20 O -0.59 -17.02 16.89 -3.03 -0.05 -17.07 16 21 C 0.12 1.14 3.13 44.69 0.14 1.28 16 22 H 0.15 0.19 7.74 -2.39 -0.02 0.17 16 23 C -0.12 -0.60 6.28 31.65 0.20 -0.41 16 24 C -0.14 -1.08 6.86 30.59 0.21 -0.87 16 25 C 0.51 9.44 8.43 87.88 0.74 10.18 16 26 O -0.59 -16.89 18.03 -3.02 -0.05 -16.95 16 27 N -0.71 -11.22 5.47 -442.79 -2.42 -13.65 16 28 C 0.11 2.14 6.39 86.73 0.55 2.70 16 29 H 0.28 13.64 8.31 -92.71 -0.77 12.87 16 30 H 0.40 18.25 7.90 -92.71 -0.73 17.52 16 31 H 0.11 2.82 8.13 -2.39 -0.02 2.80 16 32 H 0.07 1.76 8.09 -2.38 -0.02 1.74 16 33 H 0.34 10.51 8.15 -89.70 -0.73 9.78 16 34 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.11 0.86 8.14 -2.38 -0.02 0.84 16 36 H 0.12 -0.04 6.61 -2.39 -0.02 -0.06 16 37 H 0.10 0.16 8.14 -2.39 -0.02 0.14 16 38 H 0.07 0.70 7.91 -2.39 -0.02 0.69 16 39 H 0.15 -0.46 7.42 -2.39 -0.02 -0.48 16 40 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.14 0.22 8.14 -2.39 -0.02 0.20 16 42 H 0.41 7.11 8.95 -92.71 -0.83 6.28 16 43 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 44 H 0.05 1.39 7.97 -2.39 -0.02 1.37 16 Total: -1.00 -84.57 369.25 -2.85 -87.42 By element: Atomic # 1 Polarization: 32.35 SS G_CDS: -1.23 Total: 31.12 kcal Atomic # 6 Polarization: 23.22 SS G_CDS: 5.87 Total: 29.08 kcal Atomic # 7 Polarization: -114.54 SS G_CDS: -9.36 Total: -123.90 kcal Atomic # 8 Polarization: -67.65 SS G_CDS: -0.15 Total: -67.80 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.08 kcal Total: -84.57 -2.85 -87.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001187221181.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.263 kcal (2) G-P(sol) polarization free energy of solvation -84.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds