Wall clock time and date at job start Fri Apr 10 2020 18:32:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00259 * 2 1 4 4 H 1.48508 * 109.46685 * 89.99762 * 3 2 1 5 5 H 1.48494 * 109.47357 * 209.99841 * 3 2 1 6 6 H 1.48502 * 109.47120 * 330.00560 * 3 2 1 7 7 C 1.38816 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99460 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00401 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00121 * 180.02562 * 9 7 2 11 11 H 1.08999 * 110.64490 * 34.29657 * 10 9 7 12 12 C 1.55165 * 110.72000 * 271.15446 * 10 9 7 13 13 C 1.54912 * 101.58248 * 206.13624 * 12 10 9 14 14 N 1.47425 * 104.83031 * 37.00710 * 13 12 10 15 15 C 1.34782 * 125.64662 * 155.91189 * 14 13 12 16 16 O 1.21281 * 120.00062 * 179.97438 * 15 14 13 17 17 C 1.50698 * 119.99936 * 359.96741 * 15 14 13 18 18 C 1.52996 * 109.47066 * 180.02562 * 17 15 14 19 19 C 1.53001 * 109.47227 * 179.97438 * 18 17 15 20 20 N 1.46495 * 109.47496 * 180.02562 * 19 18 17 21 21 C 1.34770 * 124.17941 * 89.99951 * 20 19 18 22 22 O 1.21230 * 127.15434 * 359.97438 * 21 20 19 23 23 C 1.51588 * 105.68461 * 179.97438 * 21 20 19 24 24 N 1.47320 * 103.59161 * 359.97438 * 23 21 20 25 25 C 1.33798 * 124.17350 * 269.70576 * 20 19 18 26 26 O 1.21533 * 123.77407 * 0.03225 * 25 20 19 27 27 C 1.47316 * 108.74055 * 335.71317 * 14 13 12 28 28 H 0.97001 * 119.99885 * 179.97438 * 1 2 3 29 29 H 0.97000 * 119.99302 * 359.97438 * 9 7 2 30 30 H 1.08997 * 110.99809 * 324.20743 * 12 10 9 31 31 H 1.08998 * 111.00542 * 88.05892 * 12 10 9 32 32 H 1.08990 * 110.36712 * 155.84555 * 13 12 10 33 33 H 1.09000 * 110.36204 * 278.06271 * 13 12 10 34 34 H 1.09004 * 109.47484 * 300.00904 * 17 15 14 35 35 H 1.08997 * 109.47282 * 60.00349 * 17 15 14 36 36 H 1.08997 * 109.47438 * 299.99922 * 18 17 15 37 37 H 1.08998 * 109.46865 * 60.00434 * 18 17 15 38 38 H 1.09004 * 109.47425 * 300.00683 * 19 18 17 39 39 H 1.09010 * 109.46986 * 59.99751 * 19 18 17 40 40 H 1.08990 * 110.59802 * 118.52402 * 23 21 20 41 41 H 1.08997 * 110.59549 * 241.47386 * 23 21 20 42 42 H 0.96995 * 126.68419 * 179.97438 * 24 23 21 43 43 H 1.08997 * 110.06928 * 241.87297 * 27 14 13 44 44 H 1.09000 * 109.84708 * 120.60976 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0463 1.4002 5 1 3.5478 1.4401 -0.7000 6 1 1.4477 2.6527 -0.6999 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 1 2.9794 -3.5686 0.5739 12 6 2.3589 -4.1169 -1.4526 13 6 2.4687 -5.6520 -1.2756 14 7 1.4457 -5.9900 -0.2693 15 6 0.8570 -7.1934 -0.1212 16 8 0.0245 -7.3587 0.7451 17 6 1.2330 -8.3334 -1.0322 18 6 0.4245 -9.5761 -0.6545 19 6 0.8059 -10.7334 -1.5798 20 7 0.0313 -11.9232 -1.2186 21 6 -1.1705 -12.2326 -1.7442 22 8 -1.7911 -11.6026 -2.5734 23 6 -1.5846 -13.5323 -1.0829 24 7 -0.4625 -13.8327 -0.1769 25 6 0.4322 -12.8398 -0.3301 26 8 1.4855 -12.7805 0.2732 27 6 1.1762 -4.7964 0.5510 28 1 -0.4850 -0.8401 -0.0004 29 1 0.3556 -2.3880 -0.0016 30 1 1.5387 -3.8586 -2.1223 31 1 3.2993 -3.6964 -1.8087 32 1 2.2567 -6.1585 -2.2170 33 1 3.4614 -5.9222 -0.9153 34 1 1.0170 -8.0597 -2.0650 35 1 2.2969 -8.5461 -0.9279 36 1 0.6403 -9.8499 0.3782 37 1 -0.6393 -9.3631 -0.7593 38 1 0.5898 -10.4593 -2.6125 39 1 1.8698 -10.9465 -1.4756 40 1 -2.5078 -13.3985 -0.5193 41 1 -1.6987 -14.3213 -1.8262 42 1 -0.3831 -14.5984 0.4131 43 1 1.4330 -4.9923 1.5921 44 1 0.1241 -4.5227 0.4718 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001187720080.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:46 Heat of formation + Delta-G solvation = -62.200017 kcal Electronic energy + Delta-G solvation = -26793.411926 eV Core-core repulsion = 22747.061227 eV Total energy + Delta-G solvation = -4046.350700 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.74570 -39.90492 -38.99850 -37.54324 -36.52973 -36.01534 -34.42935 -33.14367 -31.55426 -29.49674 -28.74415 -28.06336 -26.87695 -23.89214 -23.33678 -23.07805 -22.34453 -20.77469 -20.22979 -19.10004 -18.47983 -17.59315 -17.53565 -17.27623 -16.87356 -16.19542 -16.03676 -15.73304 -15.33606 -14.95413 -14.70811 -14.62946 -14.46970 -14.09920 -13.95691 -13.67057 -13.34666 -12.93892 -12.85506 -12.47093 -12.39258 -12.03921 -11.86792 -11.74759 -11.34993 -11.14710 -11.07620 -10.76057 -10.69782 -10.63440 -10.33770 -10.25125 -10.04874 -10.00850 -9.74504 -9.25164 -8.99186 -8.47836 -7.13561 -6.16663 -3.18678 1.16988 1.72331 2.54357 2.64441 2.72235 3.08646 3.48932 3.50328 3.53596 3.67556 4.26148 4.36837 4.44734 4.57504 4.61708 4.62384 4.88265 4.88767 4.96765 5.02677 5.13119 5.21582 5.26084 5.29637 5.38604 5.49424 5.56335 5.69482 5.75976 5.86866 5.96233 5.97851 6.15210 6.23716 6.27850 6.47472 6.51152 6.57136 6.79916 6.90183 7.64794 7.66403 7.74358 8.25902 8.68497 9.12965 9.99534 10.13036 11.31238 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.034227 B = 0.001917 C = 0.001891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.879308 B =14599.300544 C =14800.813501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.043 4.043 3 Si 1.084 2.916 4 H -0.295 1.295 5 H -0.294 1.294 6 H -0.287 1.287 7 C -0.336 4.336 8 H 0.067 0.933 9 N -0.727 5.727 10 C 0.176 3.824 11 H 0.066 0.934 12 C -0.154 4.154 13 C 0.098 3.902 14 N -0.614 5.614 15 C 0.525 3.475 16 O -0.546 6.546 17 C -0.131 4.131 18 C -0.120 4.120 19 C 0.119 3.881 20 N -0.575 5.575 21 C 0.519 3.481 22 O -0.465 6.465 23 C 0.062 3.938 24 N -0.730 5.730 25 C 0.701 3.299 26 O -0.539 6.539 27 C 0.100 3.900 28 H 0.256 0.744 29 H 0.369 0.631 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.097 0.903 39 H 0.099 0.901 40 H 0.125 0.875 41 H 0.124 0.876 42 H 0.442 0.558 43 H 0.066 0.934 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.223 -30.270 -5.440 30.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.241 4.241 3 Si 0.915 3.085 4 H -0.222 1.222 5 H -0.221 1.221 6 H -0.213 1.213 7 C -0.467 4.467 8 H 0.085 0.915 9 N -0.369 5.369 10 C 0.065 3.935 11 H 0.084 0.916 12 C -0.195 4.195 13 C -0.025 4.025 14 N -0.348 5.348 15 C 0.313 3.687 16 O -0.424 6.424 17 C -0.172 4.172 18 C -0.159 4.159 19 C -0.002 4.002 20 N -0.322 5.322 21 C 0.306 3.694 22 O -0.334 6.334 23 C -0.065 4.065 24 N -0.396 5.396 25 C 0.401 3.599 26 O -0.412 6.412 27 C -0.023 4.023 28 H 0.068 0.932 29 H 0.203 0.797 30 H 0.092 0.908 31 H 0.096 0.904 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.114 0.886 35 H 0.115 0.885 36 H 0.097 0.903 37 H 0.095 0.905 38 H 0.115 0.885 39 H 0.117 0.883 40 H 0.142 0.858 41 H 0.142 0.858 42 H 0.286 0.714 43 H 0.084 0.916 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.075 -28.239 -5.134 28.722 hybrid contribution -0.065 -2.023 0.188 2.032 sum 1.010 -30.262 -4.945 30.680 Atomic orbital electron populations 1.70852 1.06092 1.28596 1.52974 1.25836 0.97038 1.01131 1.00080 0.83178 0.73850 0.75191 0.76300 1.22230 1.22072 1.21349 1.20046 0.92077 0.85459 1.49136 0.91471 1.42381 1.04840 1.00402 1.89300 1.21126 0.94278 0.85188 0.92933 0.91581 1.23540 1.02759 0.91755 1.01469 1.22406 0.91141 0.97744 0.91213 1.48579 1.41039 1.10391 1.34817 1.20191 0.81026 0.82521 0.84920 1.90705 1.33399 1.82674 1.35656 1.21498 1.02139 0.93227 1.00296 1.21663 1.01375 0.92403 1.00457 1.21767 0.96416 0.81937 1.00099 1.46376 1.21317 1.24262 1.40210 1.20926 0.80534 0.86801 0.81137 1.90856 1.56598 1.56164 1.29771 1.22482 0.92632 0.96508 0.94919 1.45433 1.20313 1.27281 1.46539 1.15890 0.83996 0.80113 0.79895 1.91041 1.22882 1.77307 1.49953 1.22360 1.00894 0.84538 0.94546 0.93250 0.79707 0.90799 0.90424 0.91153 0.91472 0.88552 0.88501 0.90250 0.90487 0.88455 0.88262 0.85757 0.85847 0.71407 0.91587 0.91408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.90 13.70 55.49 0.76 -28.14 16 2 C -0.04 -1.23 5.50 -17.43 -0.10 -1.32 16 3 Si 1.08 25.56 29.92 -169.99 -5.09 20.48 16 4 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.34 -9.21 9.97 -15.06 -0.15 -9.36 16 8 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 9 N -0.73 -17.82 5.23 -51.65 -0.27 -18.09 16 10 C 0.18 3.41 3.59 -66.09 -0.24 3.17 16 11 H 0.07 1.28 8.11 -51.93 -0.42 0.86 16 12 C -0.15 -2.48 6.77 -24.58 -0.17 -2.64 16 13 C 0.10 1.23 6.69 -2.53 -0.02 1.21 16 14 N -0.61 -9.40 3.33 -170.28 -0.57 -9.97 16 15 C 0.52 7.99 7.85 -10.98 -0.09 7.90 16 16 O -0.55 -10.50 16.31 5.56 0.09 -10.40 16 17 C -0.13 -1.32 4.71 -27.89 -0.13 -1.45 16 18 C -0.12 -1.25 4.83 -26.73 -0.13 -1.38 16 19 C 0.12 0.95 5.70 -4.04 -0.02 0.93 16 20 N -0.58 -4.76 2.60 -120.72 -0.31 -5.07 16 21 C 0.52 3.87 8.32 -10.55 -0.09 3.78 16 22 O -0.46 -4.95 17.76 5.60 0.10 -4.85 16 23 C 0.06 0.18 7.97 -4.31 -0.03 0.15 16 24 N -0.73 -3.22 6.58 -65.73 -0.43 -3.65 16 25 C 0.70 6.11 8.62 -88.01 -0.76 5.35 16 26 O -0.54 -6.74 17.48 5.34 0.09 -6.64 16 27 C 0.10 1.80 6.64 -2.90 -0.02 1.78 16 28 H 0.26 7.78 6.77 -40.82 -0.28 7.51 16 29 H 0.37 9.47 6.37 -40.82 -0.26 9.21 16 30 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 31 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.07 0.70 7.48 -51.93 -0.39 0.32 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.10 0.79 7.85 -51.93 -0.41 0.38 16 35 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.08 0.98 8.10 -51.93 -0.42 0.56 16 37 H 0.08 0.93 8.10 -51.93 -0.42 0.51 16 38 H 0.10 0.66 8.00 -51.93 -0.42 0.25 16 39 H 0.10 0.72 7.86 -51.92 -0.41 0.31 16 40 H 0.12 0.15 8.14 -51.93 -0.42 -0.28 16 41 H 0.12 0.05 8.14 -51.93 -0.42 -0.38 16 42 H 0.44 0.91 8.96 -40.82 -0.37 0.55 16 43 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 44 H 0.07 1.34 7.70 -51.93 -0.40 0.94 16 LS Contribution 371.51 15.07 5.60 5.60 Total: -1.00 -38.04 371.51 -8.31 -46.35 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: -6.35 Total: 6.27 kcal Atomic # 6 Polarization: 10.07 SS G_CDS: -1.94 Total: 8.13 kcal Atomic # 7 Polarization: -64.10 SS G_CDS: -0.82 Total: -64.93 kcal Atomic # 8 Polarization: -22.19 SS G_CDS: 0.28 Total: -21.90 kcal Atomic # 14 Polarization: 25.56 SS G_CDS: -5.09 Total: 20.48 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -38.04 -8.31 -46.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001187720080.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.846 kcal (2) G-P(sol) polarization free energy of solvation -38.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds