Wall clock time and date at job start Fri Apr 10 2020 18:32:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00259 * 2 1 4 4 H 1.48508 * 109.46685 * 89.99762 * 3 2 1 5 5 H 1.48494 * 109.47357 * 209.99841 * 3 2 1 6 6 H 1.48502 * 109.47120 * 330.00560 * 3 2 1 7 7 C 1.38816 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99460 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00401 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00121 * 180.02562 * 9 7 2 11 11 H 1.08999 * 110.64490 * 34.29657 * 10 9 7 12 12 C 1.55165 * 110.72000 * 271.15446 * 10 9 7 13 13 C 1.54912 * 101.58248 * 206.13624 * 12 10 9 14 14 N 1.47425 * 104.83031 * 37.00710 * 13 12 10 15 15 C 1.34782 * 125.64662 * 155.91189 * 14 13 12 16 16 O 1.21281 * 120.00062 * 179.97438 * 15 14 13 17 17 C 1.50698 * 119.99936 * 359.96741 * 15 14 13 18 18 C 1.52996 * 109.47066 * 180.02562 * 17 15 14 19 19 C 1.53001 * 109.47227 * 179.97438 * 18 17 15 20 20 N 1.46495 * 109.47496 * 180.02562 * 19 18 17 21 21 C 1.34770 * 124.17941 * 89.99951 * 20 19 18 22 22 O 1.21230 * 127.15434 * 359.97438 * 21 20 19 23 23 C 1.51588 * 105.68461 * 179.97438 * 21 20 19 24 24 N 1.47320 * 103.59161 * 359.97438 * 23 21 20 25 25 C 1.33798 * 124.17350 * 269.70576 * 20 19 18 26 26 O 1.21533 * 123.77407 * 0.03225 * 25 20 19 27 27 C 1.47316 * 108.74055 * 335.71317 * 14 13 12 28 28 H 0.97001 * 119.99885 * 179.97438 * 1 2 3 29 29 H 0.97000 * 119.99302 * 359.97438 * 9 7 2 30 30 H 1.08997 * 110.99809 * 324.20743 * 12 10 9 31 31 H 1.08998 * 111.00542 * 88.05892 * 12 10 9 32 32 H 1.08990 * 110.36712 * 155.84555 * 13 12 10 33 33 H 1.09000 * 110.36204 * 278.06271 * 13 12 10 34 34 H 1.09004 * 109.47484 * 300.00904 * 17 15 14 35 35 H 1.08997 * 109.47282 * 60.00349 * 17 15 14 36 36 H 1.08997 * 109.47438 * 299.99922 * 18 17 15 37 37 H 1.08998 * 109.46865 * 60.00434 * 18 17 15 38 38 H 1.09004 * 109.47425 * 300.00683 * 19 18 17 39 39 H 1.09010 * 109.46986 * 59.99751 * 19 18 17 40 40 H 1.08990 * 110.59802 * 118.52402 * 23 21 20 41 41 H 1.08997 * 110.59549 * 241.47386 * 23 21 20 42 42 H 0.96995 * 126.68419 * 179.97438 * 24 23 21 43 43 H 1.08997 * 110.06928 * 241.87297 * 27 14 13 44 44 H 1.09000 * 109.84708 * 120.60976 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0463 1.4002 5 1 3.5478 1.4401 -0.7000 6 1 1.4477 2.6527 -0.6999 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 1 2.9794 -3.5686 0.5739 12 6 2.3589 -4.1169 -1.4526 13 6 2.4687 -5.6520 -1.2756 14 7 1.4457 -5.9900 -0.2693 15 6 0.8570 -7.1934 -0.1212 16 8 0.0245 -7.3587 0.7451 17 6 1.2330 -8.3334 -1.0322 18 6 0.4245 -9.5761 -0.6545 19 6 0.8059 -10.7334 -1.5798 20 7 0.0313 -11.9232 -1.2186 21 6 -1.1705 -12.2326 -1.7442 22 8 -1.7911 -11.6026 -2.5734 23 6 -1.5846 -13.5323 -1.0829 24 7 -0.4625 -13.8327 -0.1769 25 6 0.4322 -12.8398 -0.3301 26 8 1.4855 -12.7805 0.2732 27 6 1.1762 -4.7964 0.5510 28 1 -0.4850 -0.8401 -0.0004 29 1 0.3556 -2.3880 -0.0016 30 1 1.5387 -3.8586 -2.1223 31 1 3.2993 -3.6964 -1.8087 32 1 2.2567 -6.1585 -2.2170 33 1 3.4614 -5.9222 -0.9153 34 1 1.0170 -8.0597 -2.0650 35 1 2.2969 -8.5461 -0.9279 36 1 0.6403 -9.8499 0.3782 37 1 -0.6393 -9.3631 -0.7593 38 1 0.5898 -10.4593 -2.6125 39 1 1.8698 -10.9465 -1.4756 40 1 -2.5078 -13.3985 -0.5193 41 1 -1.6987 -14.3213 -1.8262 42 1 -0.3831 -14.5984 0.4131 43 1 1.4330 -4.9923 1.5921 44 1 0.1241 -4.5227 0.4718 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001187720080.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:46 Heat of formation + Delta-G solvation = -92.412290 kcal Electronic energy + Delta-G solvation = -26794.722029 eV Core-core repulsion = 22747.061227 eV Total energy + Delta-G solvation = -4047.660802 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.31459 -41.16596 -39.66836 -38.92687 -37.19667 -36.71510 -36.26294 -33.98922 -33.22828 -30.97175 -29.83656 -28.77731 -27.90255 -25.59876 -24.53144 -23.89643 -23.30576 -21.75927 -21.36982 -20.25485 -19.55981 -19.07776 -18.28305 -18.05119 -17.70896 -17.38351 -16.91725 -16.67903 -16.39254 -16.24429 -15.95181 -15.61270 -15.30511 -15.15658 -14.99279 -14.78291 -14.48183 -14.31062 -13.85658 -13.52509 -13.47905 -13.33179 -13.01881 -12.86198 -12.79641 -12.45320 -12.41697 -12.06201 -11.93730 -11.86252 -11.80082 -11.33752 -11.32172 -11.08238 -10.95697 -10.88847 -10.42259 -9.77083 -9.17936 -8.41252 -5.37274 0.60761 1.18131 1.53877 1.59318 1.70064 1.83502 1.85145 1.95627 2.28186 2.71439 3.05270 3.32683 3.41691 3.61431 3.71433 3.73609 3.81696 3.90090 4.07876 4.15582 4.20646 4.31099 4.31341 4.39120 4.40466 4.41900 4.53771 4.57862 4.64558 4.68121 4.78642 4.90403 4.98719 5.08719 5.14625 5.19436 5.35393 5.59349 5.83243 6.02231 6.37312 6.44784 6.47924 7.02451 7.05727 7.09430 7.92046 8.05334 9.10020 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.034227 B = 0.001917 C = 0.001891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.879308 B =14599.300544 C =14800.813501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.977 5.977 2 C -0.108 4.108 3 Si 1.132 2.868 4 H -0.287 1.287 5 H -0.267 1.267 6 H -0.296 1.296 7 C -0.328 4.328 8 H 0.076 0.924 9 N -0.744 5.744 10 C 0.169 3.831 11 H 0.068 0.932 12 C -0.145 4.145 13 C 0.106 3.894 14 N -0.615 5.615 15 C 0.517 3.483 16 O -0.597 6.597 17 C -0.119 4.119 18 C -0.111 4.111 19 C 0.120 3.880 20 N -0.582 5.582 21 C 0.512 3.488 22 O -0.502 6.502 23 C 0.073 3.927 24 N -0.711 5.711 25 C 0.694 3.306 26 O -0.584 6.584 27 C 0.108 3.892 28 H 0.242 0.758 29 H 0.357 0.643 30 H 0.054 0.946 31 H 0.089 0.911 32 H 0.109 0.891 33 H 0.097 0.903 34 H 0.126 0.874 35 H 0.130 0.870 36 H 0.053 0.947 37 H 0.052 0.948 38 H 0.113 0.887 39 H 0.110 0.890 40 H 0.151 0.849 41 H 0.162 0.838 42 H 0.454 0.546 43 H 0.058 0.942 44 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.987 -32.569 -7.006 33.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.625 5.625 2 C -0.299 4.299 3 Si 0.957 3.043 4 H -0.214 1.214 5 H -0.192 1.192 6 H -0.223 1.223 7 C -0.459 4.459 8 H 0.094 0.906 9 N -0.386 5.386 10 C 0.059 3.941 11 H 0.086 0.914 12 C -0.186 4.186 13 C -0.016 4.016 14 N -0.349 5.349 15 C 0.308 3.692 16 O -0.478 6.478 17 C -0.159 4.159 18 C -0.150 4.150 19 C -0.001 4.001 20 N -0.327 5.327 21 C 0.302 3.698 22 O -0.374 6.374 23 C -0.053 4.053 24 N -0.376 5.376 25 C 0.394 3.606 26 O -0.461 6.461 27 C -0.017 4.017 28 H 0.053 0.947 29 H 0.190 0.810 30 H 0.073 0.927 31 H 0.108 0.892 32 H 0.127 0.873 33 H 0.115 0.885 34 H 0.144 0.856 35 H 0.148 0.852 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.131 0.869 39 H 0.128 0.872 40 H 0.169 0.831 41 H 0.179 0.821 42 H 0.301 0.699 43 H 0.077 0.923 44 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 2.873 -30.639 -6.719 31.498 hybrid contribution -0.638 -1.413 0.714 1.707 sum 2.235 -32.051 -6.004 32.686 Atomic orbital electron populations 1.70972 1.07402 1.27827 1.56321 1.27291 0.97069 1.04959 1.00552 0.82568 0.73694 0.71299 0.76750 1.21404 1.19161 1.22265 1.20411 0.92577 0.86421 1.46456 0.90632 1.42590 1.04537 1.01681 1.89779 1.21343 0.93781 0.83528 0.95438 0.91380 1.23344 1.02520 0.94685 0.98027 1.22594 0.91706 0.94990 0.92290 1.48689 1.41699 1.09579 1.34894 1.21215 0.79912 0.83238 0.84855 1.90684 1.35622 1.83489 1.38009 1.21560 1.03783 0.90398 1.00156 1.21526 1.00041 0.93758 0.99708 1.21760 0.97084 0.81187 1.00081 1.46495 1.21824 1.24210 1.40185 1.21641 0.79802 0.87860 0.80490 1.90838 1.57331 1.57692 1.31554 1.22723 0.92419 0.94889 0.95298 1.45418 1.19595 1.26399 1.46227 1.16090 0.84018 0.80818 0.79649 1.91007 1.24939 1.78450 1.51684 1.22021 0.98997 0.85787 0.94846 0.94741 0.81046 0.92691 0.89199 0.87259 0.88467 0.85556 0.85210 0.92824 0.92899 0.86888 0.87205 0.83122 0.82113 0.69913 0.92340 0.94163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -61.89 13.70 21.65 0.30 -61.60 16 2 C -0.11 -6.24 5.50 84.86 0.47 -5.77 16 3 Si 1.13 51.48 29.92 68.60 2.05 53.53 16 4 H -0.29 -12.57 7.11 99.48 0.71 -11.87 16 5 H -0.27 -10.80 7.11 99.48 0.71 -10.10 16 6 H -0.30 -13.77 7.11 99.48 0.71 -13.07 16 7 C -0.33 -18.00 9.97 84.03 0.84 -17.16 16 8 H 0.08 3.95 7.83 -2.91 -0.02 3.93 16 9 N -0.74 -37.33 5.23 -317.33 -1.66 -38.99 16 10 C 0.17 6.48 3.59 46.19 0.17 6.65 16 11 H 0.07 2.59 8.11 -2.39 -0.02 2.57 16 12 C -0.15 -4.39 6.77 31.99 0.22 -4.18 16 13 C 0.11 2.26 6.69 86.86 0.58 2.84 16 14 N -0.62 -18.04 3.33 -811.04 -2.70 -20.75 16 15 C 0.52 15.31 7.85 87.66 0.69 16.00 16 16 O -0.60 -23.66 16.31 -3.03 -0.05 -23.71 16 17 C -0.12 -2.09 4.71 29.85 0.14 -1.95 16 18 C -0.11 -2.25 4.83 30.59 0.15 -2.10 16 19 C 0.12 1.74 5.70 86.38 0.49 2.23 16 20 N -0.58 -8.94 2.60 -773.10 -2.01 -10.95 16 21 C 0.51 6.85 8.32 87.94 0.73 7.59 16 22 O -0.50 -10.25 17.76 -2.88 -0.05 -10.30 16 23 C 0.07 0.20 7.97 85.76 0.68 0.89 16 24 N -0.71 -4.63 6.58 -480.30 -3.16 -7.79 16 25 C 0.69 11.34 8.62 179.44 1.55 12.88 16 26 O -0.58 -14.42 17.48 -3.82 -0.07 -14.49 16 27 C 0.11 3.98 6.64 86.67 0.58 4.56 16 28 H 0.24 15.43 6.77 -92.71 -0.63 14.80 16 29 H 0.36 19.30 6.37 -92.71 -0.59 18.71 16 30 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 32 H 0.11 1.59 7.48 -2.39 -0.02 1.58 16 33 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.13 1.54 7.85 -2.39 -0.02 1.52 16 35 H 0.13 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.05 1.35 8.10 -2.39 -0.02 1.33 16 37 H 0.05 1.31 8.10 -2.39 -0.02 1.29 16 38 H 0.11 1.29 8.00 -2.39 -0.02 1.27 16 39 H 0.11 1.37 7.86 -2.38 -0.02 1.36 16 40 H 0.15 -0.20 8.14 -2.39 -0.02 -0.22 16 41 H 0.16 -0.59 8.14 -2.39 -0.02 -0.61 16 42 H 0.45 0.76 8.96 -92.71 -0.83 -0.07 16 43 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 44 H 0.04 1.69 7.70 -2.39 -0.02 1.67 16 Total: -1.00 -88.51 371.51 -0.32 -88.83 By element: Atomic # 1 Polarization: 23.96 SS G_CDS: -0.24 Total: 23.73 kcal Atomic # 6 Polarization: 15.21 SS G_CDS: 7.28 Total: 22.49 kcal Atomic # 7 Polarization: -130.84 SS G_CDS: -9.24 Total: -140.08 kcal Atomic # 8 Polarization: -48.33 SS G_CDS: -0.17 Total: -48.50 kcal Atomic # 14 Polarization: 51.48 SS G_CDS: 2.05 Total: 53.53 kcal Total: -88.51 -0.32 -88.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001187720080.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.580 kcal (2) G-P(sol) polarization free energy of solvation -88.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds