Wall clock time and date at job start Fri Apr 10 2020 18:32:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47306 * 2 1 4 4 C 1.52991 * 109.47101 * 239.99460 * 2 1 3 5 5 C 1.52997 * 109.47092 * 54.11509 * 4 2 1 6 6 F 1.39899 * 109.47673 * 55.57210 * 5 4 2 7 7 F 1.39903 * 109.47279 * 175.57435 * 5 4 2 8 8 F 1.39898 * 109.47034 * 295.57075 * 5 4 2 9 9 C 1.50702 * 109.46668 * 119.99879 * 2 1 3 10 10 O 1.21278 * 120.00111 * 120.00515 * 9 2 1 11 11 N 1.34781 * 120.00153 * 299.99361 * 9 2 1 12 12 C 1.46496 * 120.00107 * 179.72473 * 11 9 2 13 13 H 1.08997 * 110.88765 * 34.58556 * 12 11 9 14 14 C 1.54907 * 111.00714 * 270.69726 * 12 11 9 15 15 N 1.47465 * 104.81358 * 204.95123 * 14 12 11 16 16 C 1.36940 * 125.63059 * 204.05384 * 15 14 12 17 17 H 1.08001 * 119.99908 * 359.97438 * 16 15 14 18 18 C 1.38808 * 119.99918 * 180.02562 * 16 15 14 19 19 N 1.31620 * 120.00121 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 119.99934 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46806 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47338 * 119.99693 * 20 18 16 23 23 H 1.48501 * 109.46787 * 239.99661 * 20 18 16 24 24 C 1.47023 * 108.72214 * 24.07236 * 15 14 12 25 25 C 1.54327 * 107.27102 * 358.97405 * 24 15 14 26 26 H 1.08995 * 110.71675 * 96.17454 * 25 24 15 27 27 O 1.42896 * 110.87195 * 219.37288 * 25 24 15 28 28 H 1.09000 * 109.46864 * 290.73663 * 1 2 3 29 29 H 1.08998 * 109.46732 * 50.73203 * 1 2 3 30 30 H 1.08995 * 109.46977 * 170.73092 * 1 2 3 31 31 H 1.09000 * 109.47319 * 191.67362 * 3 2 1 32 32 H 1.09001 * 109.46992 * 311.67281 * 3 2 1 33 33 H 1.09000 * 109.47165 * 71.67334 * 3 2 1 34 34 H 1.09006 * 109.46972 * 174.11020 * 4 2 1 35 35 H 1.08995 * 109.47458 * 294.10975 * 4 2 1 36 36 H 0.97002 * 119.99800 * 0.02562 * 11 9 2 37 37 H 1.09000 * 110.36605 * 323.75682 * 14 12 11 38 38 H 1.08995 * 110.36539 * 86.07922 * 14 12 11 39 39 H 0.97002 * 119.99959 * 180.02562 * 19 18 16 40 40 H 1.09006 * 109.88250 * 239.56291 * 24 15 14 41 41 H 1.08999 * 109.88513 * 118.39451 * 24 15 14 42 42 H 0.96696 * 114.00486 * 293.61547 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.4128 -0.0907 -2.4940 6 9 1.6809 1.2823 -2.5068 7 9 1.9549 -0.6823 -3.6400 8 9 0.0291 -0.2954 -2.4737 9 6 2.0323 -0.7104 1.2305 10 8 2.7296 -1.6964 1.1193 11 7 1.7067 -0.2498 2.4547 12 6 2.1900 -0.9439 3.6508 13 1 3.1851 -1.3566 3.4853 14 6 1.1970 -2.0483 4.0912 15 7 1.4420 -2.2217 5.5350 16 6 1.1678 -3.3501 6.2608 17 1 0.7339 -4.2120 5.7758 18 6 1.4466 -3.3857 7.6202 19 7 1.9748 -2.3351 8.2114 20 14 1.0719 -4.9247 8.6105 21 1 0.4853 -5.9567 7.7182 22 1 2.3265 -5.4444 9.2113 23 1 0.1055 -4.5962 9.6891 24 6 2.0287 -0.9827 6.0662 25 6 2.1766 -0.0021 4.8838 26 1 1.3271 0.6793 4.8394 27 8 3.4024 0.7265 4.9768 28 1 -0.3633 0.3639 0.9611 29 1 -0.3633 0.6505 -0.7956 30 1 -0.3633 -1.0142 -0.1655 31 1 3.1100 1.4495 -0.2079 32 1 1.5170 2.0128 -0.7676 33 1 1.8566 1.8927 0.9755 34 1 3.1250 -0.6309 -1.3034 35 1 1.7654 -1.7749 -1.1979 36 1 1.1488 0.5387 2.5436 37 1 0.1702 -1.7267 3.9169 38 1 1.4006 -2.9764 3.5571 39 1 2.1700 -2.3601 9.1612 40 1 3.0071 -1.1917 6.4990 41 1 1.3703 -0.5551 6.8223 42 1 3.4450 1.3299 5.7312 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001197493669.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:48 Heat of formation + Delta-G solvation = -211.718773 kcal Electronic energy + Delta-G solvation = -29043.400597 eV Core-core repulsion = 24416.416786 eV Total energy + Delta-G solvation = -4626.983811 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.145 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -50.44918 -47.89870 -47.88209 -40.31439 -38.13997 -35.99210 -35.11896 -34.17355 -31.76028 -29.83122 -28.35107 -27.67360 -27.06848 -24.77218 -24.24286 -22.66238 -20.61196 -20.40550 -19.65713 -18.87435 -18.84034 -17.23053 -17.16607 -16.90686 -16.34941 -15.88963 -15.20893 -15.08109 -14.99761 -14.74362 -14.42945 -14.32147 -14.17215 -14.02161 -13.97027 -13.91110 -13.67525 -13.18742 -12.73107 -12.51579 -12.47717 -12.17265 -12.12179 -11.98635 -11.76740 -11.59035 -11.40893 -11.33449 -11.29007 -10.92055 -10.85419 -10.16286 -9.96089 -9.88596 -9.76019 -9.34751 -8.90445 -8.67406 -6.95240 -5.79726 -3.14396 2.46463 2.64918 3.11605 3.36810 3.42801 3.45102 3.62231 3.72301 3.82041 4.31988 4.40064 4.49483 4.53615 4.57357 4.82977 5.12118 5.15828 5.30825 5.32422 5.40149 5.49426 5.50526 5.53200 5.57220 5.61709 5.76364 5.89181 5.92644 6.02530 6.07845 6.44950 6.56156 6.81332 7.28154 7.42634 7.57502 7.70347 8.06330 8.13400 8.27140 9.11649 9.71687 10.34236 11.32077 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.024830 B = 0.002857 C = 0.002685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.375822 B = 9799.357717 C =10426.624870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.083 4.083 3 C -0.159 4.159 4 C -0.145 4.145 5 C 0.454 3.546 6 F -0.180 7.180 7 F -0.185 7.185 8 F -0.180 7.180 9 C 0.529 3.471 10 O -0.536 6.536 11 N -0.709 5.709 12 C 0.138 3.862 13 H 0.104 0.896 14 C 0.131 3.869 15 N -0.600 5.600 16 C -0.229 4.229 17 H 0.081 0.919 18 C -0.007 4.007 19 N -0.923 5.923 20 Si 0.915 3.085 21 H -0.279 1.279 22 H -0.289 1.289 23 H -0.290 1.290 24 C 0.154 3.846 25 C 0.069 3.931 26 H 0.057 0.943 27 O -0.563 6.563 28 H 0.067 0.933 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.085 0.915 33 H 0.066 0.934 34 H 0.116 0.884 35 H 0.120 0.880 36 H 0.397 0.603 37 H 0.024 0.976 38 H 0.050 0.950 39 H 0.253 0.747 40 H 0.061 0.939 41 H 0.049 0.951 42 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.394 10.728 -18.449 21.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.086 4.086 3 C -0.216 4.216 4 C -0.183 4.183 5 C 0.400 3.600 6 F -0.161 7.161 7 F -0.166 7.166 8 F -0.161 7.161 9 C 0.314 3.686 10 O -0.412 6.412 11 N -0.359 5.359 12 C 0.033 3.967 13 H 0.122 0.878 14 C 0.003 3.997 15 N -0.328 5.328 16 C -0.357 4.357 17 H 0.099 0.901 18 C -0.204 4.204 19 N -0.571 5.571 20 Si 0.745 3.255 21 H -0.204 1.204 22 H -0.216 1.216 23 H -0.217 1.217 24 C 0.028 3.972 25 C 0.009 3.991 26 H 0.075 0.925 27 O -0.368 6.368 28 H 0.086 0.914 29 H 0.097 0.903 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.104 0.896 33 H 0.085 0.915 34 H 0.135 0.865 35 H 0.138 0.862 36 H 0.232 0.768 37 H 0.041 0.959 38 H 0.069 0.931 39 H 0.063 0.937 40 H 0.079 0.921 41 H 0.067 0.933 42 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -1.739 9.605 -18.860 21.237 hybrid contribution -0.689 0.030 1.029 1.239 sum -2.428 9.635 -17.832 20.413 Atomic orbital electron populations 1.22282 0.91361 1.03957 1.03765 1.20723 0.98212 0.97148 0.92523 1.22311 1.02448 0.92878 1.03936 1.22765 1.03781 1.02750 0.89038 1.20593 0.76706 0.76646 0.86008 1.93121 1.93646 1.32839 1.96510 1.93194 1.85779 1.83797 1.53824 1.93167 1.31730 1.94656 1.96573 1.20015 0.80139 0.84261 0.84220 1.90732 1.37787 1.26109 1.86613 1.45860 1.53144 1.31438 1.05425 1.22290 0.99897 0.92652 0.81858 0.87777 1.21849 0.95003 0.95970 0.86876 1.44261 1.73685 1.12676 1.02155 1.19138 1.35251 0.90985 0.90306 0.90071 1.24818 1.00920 0.97996 0.96623 1.69930 1.48684 1.28334 1.10158 0.85992 0.77509 0.81979 0.79970 1.20398 1.21634 1.21705 1.21822 0.99757 0.84732 0.90895 1.23448 0.85607 0.93110 0.96959 0.92522 1.86461 1.38330 1.59838 1.52177 0.91367 0.90306 0.91111 0.91469 0.89629 0.91490 0.86537 0.86214 0.76802 0.95868 0.93139 0.93683 0.92076 0.93270 0.77624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.34 7.07 37.16 0.26 -1.08 16 2 C -0.08 -0.81 0.65 -155.66 -0.10 -0.91 16 3 C -0.16 -1.32 7.59 37.16 0.28 -1.04 16 4 C -0.14 -1.36 3.88 -26.74 -0.10 -1.46 16 5 C 0.45 4.07 2.95 37.16 0.11 4.18 16 6 F -0.18 -1.59 13.81 2.25 0.03 -1.55 16 7 F -0.18 -1.81 17.32 2.25 0.04 -1.78 16 8 F -0.18 -1.66 13.92 2.25 0.03 -1.63 16 9 C 0.53 7.34 6.48 -10.98 -0.07 7.27 16 10 O -0.54 -9.57 15.60 5.56 0.09 -9.48 16 11 N -0.71 -9.77 4.84 -51.73 -0.25 -10.02 16 12 C 0.14 2.50 3.09 -65.78 -0.20 2.29 16 13 H 0.10 2.19 7.64 -51.93 -0.40 1.79 16 14 C 0.13 2.71 6.93 -2.51 -0.02 2.69 16 15 N -0.60 -15.08 3.40 -170.04 -0.58 -15.66 16 16 C -0.23 -6.32 10.28 -15.06 -0.15 -6.48 16 17 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 18 C -0.01 -0.21 5.49 -17.43 -0.10 -0.30 16 19 N -0.92 -26.45 10.31 55.49 0.57 -25.88 16 20 Si 0.92 21.89 29.55 -169.99 -5.02 16.86 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 C 0.15 3.56 5.15 -3.06 -0.02 3.54 16 25 C 0.07 1.22 3.96 -24.89 -0.10 1.12 16 26 H 0.06 0.87 8.00 -51.93 -0.42 0.46 16 27 O -0.56 -9.34 13.40 -35.23 -0.47 -9.81 16 28 H 0.07 0.54 7.32 -51.93 -0.38 0.16 16 29 H 0.08 0.60 6.04 -51.93 -0.31 0.29 16 30 H 0.07 0.64 8.00 -51.93 -0.42 0.23 16 31 H 0.07 0.58 8.05 -51.93 -0.42 0.16 16 32 H 0.09 0.63 5.66 -51.93 -0.29 0.34 16 33 H 0.07 0.52 7.27 -51.93 -0.38 0.15 16 34 H 0.12 1.06 8.08 -51.93 -0.42 0.64 16 35 H 0.12 1.17 7.92 -51.93 -0.41 0.76 16 36 H 0.40 4.34 7.20 -40.82 -0.29 4.04 16 37 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 40 H 0.06 1.61 7.30 -51.93 -0.38 1.23 16 41 H 0.05 1.23 7.50 -51.93 -0.39 0.84 16 42 H 0.38 4.70 9.12 45.56 0.42 5.12 16 LS Contribution 344.52 15.07 5.19 5.19 Total: -1.00 -32.30 344.52 -5.46 -37.76 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -4.88 Total: 6.15 kcal Atomic # 6 Polarization: 10.04 SS G_CDS: -0.21 Total: 9.83 kcal Atomic # 7 Polarization: -51.30 SS G_CDS: -0.26 Total: -51.56 kcal Atomic # 8 Polarization: -18.90 SS G_CDS: -0.39 Total: -19.29 kcal Atomic # 9 Polarization: -5.06 SS G_CDS: 0.10 Total: -4.96 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.30 -5.46 -37.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197493669.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -173.955 kcal (2) G-P(sol) polarization free energy of solvation -32.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -206.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -211.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds