Wall clock time and date at job start Fri Apr 10 2020 18:32:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47306 * 2 1 4 4 C 1.52991 * 109.47101 * 239.99460 * 2 1 3 5 5 C 1.52997 * 109.47092 * 54.11509 * 4 2 1 6 6 F 1.39899 * 109.47673 * 55.57210 * 5 4 2 7 7 F 1.39903 * 109.47279 * 175.57435 * 5 4 2 8 8 F 1.39898 * 109.47034 * 295.57075 * 5 4 2 9 9 C 1.50702 * 109.46668 * 119.99879 * 2 1 3 10 10 O 1.21278 * 120.00111 * 120.00515 * 9 2 1 11 11 N 1.34781 * 120.00153 * 299.99361 * 9 2 1 12 12 C 1.46496 * 120.00107 * 179.72473 * 11 9 2 13 13 H 1.08997 * 110.88765 * 34.58556 * 12 11 9 14 14 C 1.54907 * 111.00714 * 270.69726 * 12 11 9 15 15 N 1.47465 * 104.81358 * 204.95123 * 14 12 11 16 16 C 1.36940 * 125.63059 * 204.05384 * 15 14 12 17 17 H 1.08001 * 119.99908 * 359.97438 * 16 15 14 18 18 C 1.38808 * 119.99918 * 180.02562 * 16 15 14 19 19 N 1.31620 * 120.00121 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 119.99934 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46806 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47338 * 119.99693 * 20 18 16 23 23 H 1.48501 * 109.46787 * 239.99661 * 20 18 16 24 24 C 1.47023 * 108.72214 * 24.07236 * 15 14 12 25 25 C 1.54327 * 107.27102 * 358.97405 * 24 15 14 26 26 H 1.08995 * 110.71675 * 96.17454 * 25 24 15 27 27 O 1.42896 * 110.87195 * 219.37288 * 25 24 15 28 28 H 1.09000 * 109.46864 * 290.73663 * 1 2 3 29 29 H 1.08998 * 109.46732 * 50.73203 * 1 2 3 30 30 H 1.08995 * 109.46977 * 170.73092 * 1 2 3 31 31 H 1.09000 * 109.47319 * 191.67362 * 3 2 1 32 32 H 1.09001 * 109.46992 * 311.67281 * 3 2 1 33 33 H 1.09000 * 109.47165 * 71.67334 * 3 2 1 34 34 H 1.09006 * 109.46972 * 174.11020 * 4 2 1 35 35 H 1.08995 * 109.47458 * 294.10975 * 4 2 1 36 36 H 0.97002 * 119.99800 * 0.02562 * 11 9 2 37 37 H 1.09000 * 110.36605 * 323.75682 * 14 12 11 38 38 H 1.08995 * 110.36539 * 86.07922 * 14 12 11 39 39 H 0.97002 * 119.99959 * 180.02562 * 19 18 16 40 40 H 1.09006 * 109.88250 * 239.56291 * 24 15 14 41 41 H 1.08999 * 109.88513 * 118.39451 * 24 15 14 42 42 H 0.96696 * 114.00486 * 293.61547 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.4128 -0.0907 -2.4940 6 9 1.6809 1.2823 -2.5068 7 9 1.9549 -0.6823 -3.6400 8 9 0.0291 -0.2954 -2.4737 9 6 2.0323 -0.7104 1.2305 10 8 2.7296 -1.6964 1.1193 11 7 1.7067 -0.2498 2.4547 12 6 2.1900 -0.9439 3.6508 13 1 3.1851 -1.3566 3.4853 14 6 1.1970 -2.0483 4.0912 15 7 1.4420 -2.2217 5.5350 16 6 1.1678 -3.3501 6.2608 17 1 0.7339 -4.2120 5.7758 18 6 1.4466 -3.3857 7.6202 19 7 1.9748 -2.3351 8.2114 20 14 1.0719 -4.9247 8.6105 21 1 0.4853 -5.9567 7.7182 22 1 2.3265 -5.4444 9.2113 23 1 0.1055 -4.5962 9.6891 24 6 2.0287 -0.9827 6.0662 25 6 2.1766 -0.0021 4.8838 26 1 1.3271 0.6793 4.8394 27 8 3.4024 0.7265 4.9768 28 1 -0.3633 0.3639 0.9611 29 1 -0.3633 0.6505 -0.7956 30 1 -0.3633 -1.0142 -0.1655 31 1 3.1100 1.4495 -0.2079 32 1 1.5170 2.0128 -0.7676 33 1 1.8566 1.8927 0.9755 34 1 3.1250 -0.6309 -1.3034 35 1 1.7654 -1.7749 -1.1979 36 1 1.1488 0.5387 2.5436 37 1 0.1702 -1.7267 3.9169 38 1 1.4006 -2.9764 3.5571 39 1 2.1700 -2.3601 9.1612 40 1 3.0071 -1.1917 6.4990 41 1 1.3703 -0.5551 6.8223 42 1 3.4450 1.3299 5.7312 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001197493669.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:48 Heat of formation + Delta-G solvation = -235.939725 kcal Electronic energy + Delta-G solvation = -29044.450897 eV Core-core repulsion = 24416.416786 eV Total energy + Delta-G solvation = -4628.034110 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.145 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -51.17546 -48.63454 -48.60008 -41.47528 -39.64075 -36.95030 -36.66949 -35.64202 -33.61663 -30.80523 -29.95526 -28.71577 -28.33082 -26.47006 -25.20790 -23.72806 -22.33365 -21.89544 -20.75611 -19.65877 -19.56414 -19.04526 -18.32443 -17.90627 -17.51815 -17.34293 -16.61083 -16.22480 -15.83089 -15.78004 -15.73190 -15.47737 -15.09988 -15.03215 -14.83507 -14.74732 -14.69858 -14.48576 -14.45808 -14.14959 -13.76812 -13.26136 -13.17110 -13.12233 -12.86735 -12.77610 -12.74005 -12.66120 -12.59355 -12.14259 -12.06962 -12.05199 -11.89675 -11.53753 -11.07142 -10.78874 -10.71511 -10.19007 -8.97607 -7.89791 -5.26854 1.45443 1.46813 1.53575 1.56966 1.64972 2.06737 2.46791 2.85438 2.94104 3.09889 3.11988 3.31276 3.48277 3.53501 3.72467 3.75775 3.88173 3.99726 4.05189 4.19751 4.41761 4.44610 4.55243 4.60838 4.69009 4.79851 4.82714 4.86154 4.89752 4.99270 5.24560 5.29065 5.36185 5.41783 5.44677 5.65983 6.12806 6.47237 6.86547 7.04106 7.16921 7.68590 8.30495 9.19958 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.024830 B = 0.002857 C = 0.002685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.375822 B = 9799.357717 C =10426.624870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.072 4.072 3 C -0.157 4.157 4 C -0.146 4.146 5 C 0.463 3.537 6 F -0.176 7.176 7 F -0.189 7.189 8 F -0.179 7.179 9 C 0.527 3.473 10 O -0.579 6.579 11 N -0.695 5.695 12 C 0.154 3.846 13 H 0.071 0.929 14 C 0.131 3.869 15 N -0.622 5.622 16 C -0.247 4.247 17 H 0.081 0.919 18 C -0.061 4.061 19 N -0.947 5.947 20 Si 0.980 3.020 21 H -0.268 1.268 22 H -0.293 1.293 23 H -0.287 1.287 24 C 0.160 3.840 25 C 0.092 3.908 26 H 0.096 0.904 27 O -0.568 6.568 28 H 0.079 0.921 29 H 0.092 0.908 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.099 0.901 33 H 0.076 0.924 34 H 0.118 0.882 35 H 0.113 0.887 36 H 0.416 0.584 37 H 0.044 0.956 38 H 0.033 0.967 39 H 0.249 0.751 40 H 0.020 0.980 41 H 0.026 0.974 42 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.510 12.144 -19.652 23.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.075 4.075 3 C -0.214 4.214 4 C -0.185 4.185 5 C 0.409 3.591 6 F -0.157 7.157 7 F -0.171 7.171 8 F -0.161 7.161 9 C 0.314 3.686 10 O -0.458 6.458 11 N -0.347 5.347 12 C 0.047 3.953 13 H 0.090 0.910 14 C 0.004 3.996 15 N -0.350 5.350 16 C -0.376 4.376 17 H 0.099 0.901 18 C -0.254 4.254 19 N -0.596 5.596 20 Si 0.808 3.192 21 H -0.192 1.192 22 H -0.220 1.220 23 H -0.214 1.214 24 C 0.035 3.965 25 C 0.032 3.968 26 H 0.113 0.887 27 O -0.376 6.376 28 H 0.098 0.902 29 H 0.111 0.889 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.118 0.882 33 H 0.095 0.905 34 H 0.136 0.864 35 H 0.131 0.869 36 H 0.254 0.746 37 H 0.062 0.938 38 H 0.051 0.949 39 H 0.058 0.942 40 H 0.038 0.962 41 H 0.045 0.955 42 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -2.879 11.071 -20.093 23.121 hybrid contribution -0.313 -0.417 1.368 1.464 sum -3.192 10.654 -18.726 21.780 Atomic orbital electron populations 1.22327 0.90004 1.04024 1.05016 1.20683 0.99097 0.97543 0.90196 1.22349 1.02418 0.91587 1.05077 1.22748 1.04000 1.02485 0.89232 1.20379 0.76548 0.76645 0.85494 1.93128 1.93624 1.32492 1.96466 1.93188 1.85887 1.83951 1.54052 1.93170 1.31695 1.94675 1.96543 1.20759 0.79061 0.83659 0.85081 1.90722 1.39677 1.28176 1.87224 1.45620 1.53231 1.31677 1.04155 1.21731 0.97561 0.92301 0.83701 0.91047 1.21944 0.96629 0.96416 0.84562 1.44530 1.73744 1.12754 1.03983 1.19475 1.35082 0.92041 0.90987 0.90109 1.25635 1.01223 1.00920 0.97637 1.70130 1.49530 1.29937 1.09992 0.84997 0.76993 0.78831 0.78408 1.19231 1.21967 1.21402 1.21632 0.96761 0.85384 0.92769 1.23133 0.87408 0.92493 0.93784 0.88674 1.86429 1.37856 1.60026 1.53288 0.90223 0.88886 0.91800 0.91762 0.88203 0.90495 0.86412 0.86875 0.74569 0.93835 0.94862 0.94157 0.96203 0.95541 0.75343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.24 7.07 71.98 0.51 -1.73 16 2 C -0.07 -1.26 0.65 -52.93 -0.03 -1.29 16 3 C -0.16 -2.14 7.59 71.98 0.55 -1.59 16 4 C -0.15 -2.54 3.88 30.59 0.12 -2.42 16 5 C 0.46 7.39 2.95 71.98 0.21 7.61 16 6 F -0.18 -2.64 13.81 44.97 0.62 -2.01 16 7 F -0.19 -3.44 17.32 44.97 0.78 -2.67 16 8 F -0.18 -2.91 13.92 44.97 0.63 -2.29 16 9 C 0.53 13.94 6.48 87.66 0.57 14.51 16 10 O -0.58 -20.69 15.60 -3.02 -0.05 -20.74 16 11 N -0.70 -17.75 4.84 -435.97 -2.11 -19.86 16 12 C 0.15 5.45 3.09 46.38 0.14 5.60 16 13 H 0.07 3.05 7.64 -2.39 -0.02 3.04 16 14 C 0.13 5.43 6.93 86.85 0.60 6.04 16 15 N -0.62 -31.82 3.40 -691.88 -2.35 -34.17 16 16 C -0.25 -13.90 10.28 84.03 0.86 -13.04 16 17 H 0.08 4.41 7.83 -2.91 -0.02 4.38 16 18 C -0.06 -3.43 5.49 84.86 0.47 -2.96 16 19 N -0.95 -55.61 10.31 21.65 0.22 -55.39 16 20 Si 0.98 45.52 29.55 68.60 2.03 47.54 16 21 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 22 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 23 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 24 C 0.16 7.56 5.15 86.73 0.45 8.01 16 25 C 0.09 3.13 3.96 31.79 0.13 3.25 16 26 H 0.10 2.58 8.00 -2.39 -0.02 2.56 16 27 O -0.57 -17.89 13.40 -148.98 -2.00 -19.89 16 28 H 0.08 0.97 7.32 -2.39 -0.02 0.95 16 29 H 0.09 1.11 6.04 -2.39 -0.01 1.10 16 30 H 0.06 1.03 8.00 -2.39 -0.02 1.01 16 31 H 0.06 0.94 8.05 -2.39 -0.02 0.92 16 32 H 0.10 1.12 5.66 -2.39 -0.01 1.10 16 33 H 0.08 0.91 7.27 -2.39 -0.02 0.89 16 34 H 0.12 2.02 8.08 -2.38 -0.02 2.00 16 35 H 0.11 2.14 7.92 -2.39 -0.02 2.12 16 36 H 0.42 7.60 7.20 -92.71 -0.67 6.93 16 37 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.25 14.16 8.31 -92.71 -0.77 13.39 16 40 H 0.02 1.08 7.30 -2.38 -0.02 1.07 16 41 H 0.03 1.35 7.50 -2.39 -0.02 1.33 16 42 H 0.40 9.10 9.12 -74.06 -0.68 8.43 16 Total: -1.00 -71.77 344.52 2.07 -69.70 By element: Atomic # 1 Polarization: 18.08 SS G_CDS: -0.27 Total: 17.81 kcal Atomic # 6 Polarization: 17.40 SS G_CDS: 4.57 Total: 21.96 kcal Atomic # 7 Polarization: -105.18 SS G_CDS: -4.24 Total: -109.42 kcal Atomic # 8 Polarization: -38.58 SS G_CDS: -2.04 Total: -40.63 kcal Atomic # 9 Polarization: -8.99 SS G_CDS: 2.03 Total: -6.97 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.54 kcal Total: -71.77 2.07 -69.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197493669.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -166.244 kcal (2) G-P(sol) polarization free energy of solvation -71.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -238.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -235.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds