Wall clock time and date at job start Fri Apr 10 2020 18:33:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.33230 * 126.01710 * 2 1 4 4 C 1.31536 * 109.75999 * 179.97438 * 3 2 1 5 5 O 1.35208 * 125.49255 * 179.97438 * 4 3 2 6 6 N 1.34946 * 109.01625 * 359.73478 * 4 3 2 7 7 H 0.96999 * 126.55066 * 180.27193 * 6 4 3 8 8 C 1.36721 * 126.02026 * 180.02562 * 2 1 3 9 9 C 1.46375 * 126.82570 * 359.97438 * 8 2 1 10 10 O 1.21740 * 119.99815 * 21.69995 * 9 8 2 11 11 N 1.34770 * 120.00358 * 201.70292 * 9 8 2 12 12 C 1.47509 * 118.76001 * 173.59912 * 11 9 8 13 13 C 1.53577 * 111.02976 * 138.37349 * 12 11 9 14 14 C 1.51534 * 109.58046 * 320.02163 * 13 12 11 15 15 O 1.42156 * 108.75031 * 91.40068 * 14 13 12 16 16 C 1.38017 * 119.44067 * 272.76367 * 15 14 13 17 17 H 1.09003 * 109.47345 * 303.43303 * 16 15 14 18 18 C 1.53004 * 109.47117 * 183.43616 * 16 15 14 19 19 N 1.46496 * 109.46786 * 64.99780 * 18 16 15 20 20 C 1.36947 * 119.99875 * 179.97438 * 19 18 16 21 21 H 1.08000 * 119.99500 * 0.02562 * 20 19 18 22 22 C 1.38805 * 119.99790 * 180.02562 * 20 19 18 23 23 N 1.31619 * 120.00618 * 0.02562 * 22 20 19 24 24 Si 1.86808 * 119.99488 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47049 * 90.00440 * 24 22 20 26 26 H 1.48500 * 109.46790 * 210.00177 * 24 22 20 27 27 H 1.48498 * 109.47353 * 330.00067 * 24 22 20 28 28 C 1.45125 * 118.75470 * 353.60356 * 11 9 8 29 29 H 1.09003 * 109.47607 * 270.00128 * 1 2 3 30 30 H 1.09005 * 109.47389 * 29.99661 * 1 2 3 31 31 H 1.09002 * 109.47629 * 149.99707 * 1 2 3 32 32 H 0.96705 * 113.99281 * 89.98461 * 5 4 3 33 33 H 1.09000 * 109.16710 * 17.97570 * 12 11 9 34 34 H 1.09006 * 109.16825 * 258.77037 * 12 11 9 35 35 H 1.08992 * 109.45155 * 199.99148 * 13 12 11 36 36 H 1.08991 * 109.45348 * 80.05596 * 13 12 11 37 37 H 1.08999 * 109.59311 * 211.18171 * 14 13 12 38 38 H 1.09001 * 109.59229 * 331.47845 * 14 13 12 39 39 H 1.08994 * 109.47140 * 185.00222 * 18 16 15 40 40 H 1.09009 * 109.46929 * 305.00475 * 18 16 15 41 41 H 0.96997 * 120.00684 * 0.02562 * 19 18 16 42 42 H 0.96996 * 120.00027 * 180.02562 * 23 22 20 43 43 H 1.08997 * 109.46195 * 149.26178 * 28 11 9 44 44 H 1.08999 * 109.46190 * 29.29787 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2904 1.0776 0.0000 4 6 3.5531 0.7094 0.0006 5 8 4.6149 1.5465 0.0002 6 7 3.6181 -0.6385 0.0068 7 1 4.4242 -1.1780 0.0123 8 6 2.3109 -1.1058 -0.0005 9 6 1.8792 -2.5044 -0.0006 10 8 0.7635 -2.7970 -0.3901 11 7 2.7167 -3.4683 0.4305 12 6 2.2081 -4.8474 0.5540 13 6 3.2402 -5.8633 0.0430 14 6 3.9082 -5.3242 -1.2058 15 8 5.0756 -4.6073 -0.8264 16 6 4.9747 -3.2699 -0.5010 17 1 4.5284 -2.7260 -1.3336 18 6 6.3686 -2.7083 -0.2137 19 7 7.1735 -2.7499 -1.4371 20 6 8.4652 -2.2952 -1.4227 21 1 8.8905 -1.9064 -0.5093 22 6 9.2275 -2.3342 -2.5820 23 7 8.7090 -2.8076 -3.6952 24 14 10.9898 -1.7146 -2.5621 25 1 11.9040 -2.8335 -2.2196 26 1 11.3417 -1.1803 -3.9022 27 1 11.1244 -0.6375 -1.5488 28 6 4.0850 -3.1101 0.7558 29 1 -0.3634 0.0000 1.0277 30 1 -0.3634 0.8900 -0.5138 31 1 -0.3634 -0.8899 -0.5139 32 1 4.9234 1.7907 0.8836 33 1 1.2918 -4.9444 -0.0283 34 1 1.9892 -5.0557 1.6014 35 1 2.7399 -6.8031 -0.1900 36 1 3.9931 -6.0342 0.8123 37 1 4.1838 -6.1519 -1.8593 38 1 3.2218 -4.6584 -1.7290 39 1 6.2814 -1.6773 0.1290 40 1 6.8501 -3.3084 0.5585 41 1 6.7913 -3.0988 -2.2575 42 1 9.2419 -2.8352 -4.5052 43 1 4.4532 -3.7634 1.5467 44 1 4.1185 -2.0748 1.0951 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001200747865.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:02 Heat of formation + Delta-G solvation = -12.459811 kcal Electronic energy + Delta-G solvation = -29240.249560 eV Core-core repulsion = 25196.055758 eV Total energy + Delta-G solvation = -4044.193803 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.64049 -40.45501 -38.71848 -37.48298 -35.69101 -35.27841 -33.76928 -32.74144 -31.28333 -30.74947 -29.20447 -27.42490 -26.66401 -25.24062 -23.33329 -22.72650 -21.92339 -21.35520 -20.84752 -19.96415 -18.78463 -17.60511 -17.43064 -17.00620 -16.76584 -16.61616 -15.83924 -15.65737 -15.15082 -14.91081 -14.48662 -14.29925 -13.86402 -13.58554 -13.40656 -13.23858 -13.16514 -12.89341 -12.78950 -12.56669 -12.46341 -12.32595 -12.10834 -11.99443 -11.46335 -11.12274 -10.91831 -10.88425 -10.58207 -10.45824 -10.16029 -10.14749 -9.98444 -9.84147 -9.64741 -9.00168 -8.89254 -8.47473 -7.05457 -5.83856 -3.15011 1.01719 2.29720 2.42746 2.65157 3.05031 3.39142 3.43695 3.46145 3.65434 3.71581 4.22086 4.40768 4.53825 4.58831 4.66392 4.75457 4.88410 4.91862 4.98459 5.07604 5.28260 5.38669 5.46084 5.48893 5.51502 5.54426 5.60674 5.64418 5.80289 5.84435 5.89270 5.95337 6.01705 6.13935 6.19008 6.34854 6.42958 6.53353 6.96026 7.42441 7.59575 7.65290 7.69896 7.84233 8.32529 9.45039 9.97866 10.33406 11.38308 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.011830 B = 0.004534 C = 0.003483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2366.318448 B = 6174.084205 C = 8036.138641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.114 3.886 3 N -0.491 5.491 4 C 0.416 3.584 5 O -0.435 6.435 6 N -0.559 5.559 7 H 0.432 0.568 8 C -0.092 4.092 9 C 0.597 3.403 10 O -0.523 6.523 11 N -0.606 5.606 12 C 0.112 3.888 13 C -0.166 4.166 14 C 0.070 3.930 15 O -0.359 6.359 16 C 0.074 3.926 17 H 0.050 0.950 18 C 0.161 3.839 19 N -0.722 5.722 20 C -0.249 4.249 21 H 0.071 0.929 22 C -0.007 4.007 23 N -0.928 5.928 24 Si 0.909 3.091 25 H -0.289 1.289 26 H -0.290 1.290 27 H -0.281 1.281 28 C 0.047 3.953 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.093 0.907 32 H 0.407 0.593 33 H 0.096 0.904 34 H 0.069 0.931 35 H 0.088 0.912 36 H 0.081 0.919 37 H 0.094 0.906 38 H 0.051 0.949 39 H 0.021 0.979 40 H 0.038 0.962 41 H 0.389 0.611 42 H 0.257 0.743 43 H 0.101 0.899 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.945 -0.926 12.396 19.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.022 4.022 3 N -0.222 5.222 4 C 0.115 3.885 5 O -0.236 6.236 6 N -0.186 5.186 7 H 0.282 0.718 8 C -0.207 4.207 9 C 0.386 3.614 10 O -0.399 6.399 11 N -0.338 5.338 12 C -0.010 4.010 13 C -0.204 4.204 14 C -0.007 4.007 15 O -0.276 6.276 16 C 0.013 3.987 17 H 0.068 0.932 18 C 0.032 3.968 19 N -0.366 5.366 20 C -0.380 4.380 21 H 0.089 0.911 22 C -0.204 4.204 23 N -0.575 5.575 24 Si 0.740 3.260 25 H -0.216 1.216 26 H -0.217 1.217 27 H -0.207 1.207 28 C -0.078 4.078 29 H 0.093 0.907 30 H 0.095 0.905 31 H 0.112 0.888 32 H 0.265 0.735 33 H 0.115 0.885 34 H 0.087 0.913 35 H 0.107 0.893 36 H 0.100 0.900 37 H 0.112 0.888 38 H 0.069 0.931 39 H 0.039 0.961 40 H 0.056 0.944 41 H 0.223 0.777 42 H 0.067 0.933 43 H 0.119 0.881 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -15.411 -0.307 11.646 19.319 hybrid contribution 1.786 -0.571 0.221 1.888 sum -13.625 -0.878 11.867 18.090 Atomic orbital electron populations 1.20360 0.86088 1.04379 1.03033 1.20898 0.96731 0.85871 0.98650 1.70284 0.98642 1.30236 1.23059 1.20339 0.87454 0.79157 1.01589 1.84910 1.43084 1.61335 1.34260 1.45120 1.09377 1.08362 1.55748 0.71829 1.20620 0.83305 0.95063 1.21691 1.16866 0.84807 0.82725 0.77028 1.90800 1.20218 1.81675 1.47236 1.47763 1.10890 1.08897 1.66262 1.21900 0.98134 0.79125 1.01807 1.22505 0.99148 0.98793 0.99961 1.22220 0.87364 0.95880 0.95206 1.86463 1.33271 1.21483 1.86398 1.22543 0.97326 0.84719 0.94114 0.93209 1.20665 0.87632 0.95751 0.92702 1.42192 1.11644 1.76010 1.06801 1.19172 0.88589 1.34598 0.95618 0.91056 1.24763 0.98546 1.01456 0.95659 1.69669 1.36517 1.51179 1.00136 0.86175 0.84669 0.78338 0.76862 1.21590 1.21671 1.20663 1.23130 0.81822 1.02597 1.00271 0.90734 0.90542 0.88816 0.73479 0.88537 0.91284 0.89315 0.89998 0.88752 0.93069 0.96145 0.94429 0.77706 0.93343 0.88093 0.89408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.92 10.11 36.00 0.36 -0.56 16 2 C 0.11 1.62 7.13 -82.54 -0.59 1.03 16 3 N -0.49 -7.37 11.22 -10.83 -0.12 -7.49 16 4 C 0.42 5.89 9.43 -89.59 -0.84 5.05 16 5 O -0.43 -5.33 13.62 -17.32 -0.24 -5.56 16 6 N -0.56 -7.70 4.84 -10.90 -0.05 -7.75 16 7 H 0.43 5.85 2.93 -40.82 -0.12 5.73 16 8 C -0.09 -1.32 6.49 -81.98 -0.53 -1.85 16 9 C 0.60 8.42 7.52 -12.99 -0.10 8.32 16 10 O -0.52 -8.11 14.27 5.15 0.07 -8.04 16 11 N -0.61 -7.35 2.19 -174.11 -0.38 -7.73 16 12 C 0.11 1.12 6.19 -3.19 -0.02 1.10 16 13 C -0.17 -1.60 5.79 -27.17 -0.16 -1.76 16 14 C 0.07 0.90 6.37 36.42 0.23 1.14 16 15 O -0.36 -5.88 9.38 -26.54 -0.25 -6.13 16 16 C 0.07 1.15 1.75 -25.78 -0.04 1.11 16 17 H 0.05 0.87 7.73 -51.93 -0.40 0.47 16 18 C 0.16 2.97 5.76 -4.04 -0.02 2.95 16 19 N -0.72 -17.78 5.54 -59.91 -0.33 -18.11 16 20 C -0.25 -6.77 9.99 -15.06 -0.15 -6.92 16 21 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 22 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 23 N -0.93 -27.87 13.06 55.49 0.72 -27.15 16 24 Si 0.91 22.01 29.55 -169.99 -5.02 16.98 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 26 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 27 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 28 C 0.05 0.56 4.43 -3.83 -0.02 0.55 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.09 1.13 6.30 -51.93 -0.33 0.80 16 32 H 0.41 2.53 9.06 45.56 0.41 2.94 16 33 H 0.10 1.02 6.94 -51.93 -0.36 0.66 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.08 0.81 8.01 -51.93 -0.42 0.39 16 37 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 38 H 0.05 0.71 7.41 -51.93 -0.38 0.32 16 39 H 0.02 0.36 6.91 -51.93 -0.36 0.00 16 40 H 0.04 0.69 8.14 -51.92 -0.42 0.27 16 41 H 0.39 10.41 7.65 -40.82 -0.31 10.10 16 42 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 43 H 0.10 1.07 8.11 -51.93 -0.42 0.64 16 44 H 0.09 1.00 4.40 -51.93 -0.23 0.77 16 LS Contribution 351.92 15.07 5.30 5.30 Total: -1.00 -34.57 351.92 -7.27 -41.84 By element: Atomic # 1 Polarization: 19.01 SS G_CDS: -5.00 Total: 14.00 kcal Atomic # 6 Polarization: 11.82 SS G_CDS: -1.98 Total: 9.85 kcal Atomic # 7 Polarization: -68.08 SS G_CDS: -0.16 Total: -68.24 kcal Atomic # 8 Polarization: -19.32 SS G_CDS: -0.41 Total: -19.74 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -34.57 -7.27 -41.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200747865.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.380 kcal (2) G-P(sol) polarization free energy of solvation -34.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds