Wall clock time and date at job start Fri Apr 10 2020 18:33:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.33230 * 126.01710 * 2 1 4 4 C 1.31536 * 109.75999 * 179.97438 * 3 2 1 5 5 O 1.35208 * 125.49255 * 179.97438 * 4 3 2 6 6 N 1.34946 * 109.01625 * 359.73478 * 4 3 2 7 7 H 0.96999 * 126.55066 * 180.27193 * 6 4 3 8 8 C 1.36721 * 126.02026 * 180.02562 * 2 1 3 9 9 C 1.46375 * 126.82570 * 359.97438 * 8 2 1 10 10 O 1.21740 * 119.99815 * 21.69995 * 9 8 2 11 11 N 1.34770 * 120.00358 * 201.70292 * 9 8 2 12 12 C 1.47509 * 118.76001 * 173.59912 * 11 9 8 13 13 C 1.53577 * 111.02976 * 138.37349 * 12 11 9 14 14 C 1.51534 * 109.58046 * 320.02163 * 13 12 11 15 15 O 1.42156 * 108.75031 * 91.40068 * 14 13 12 16 16 C 1.38017 * 119.44067 * 272.76367 * 15 14 13 17 17 H 1.09003 * 109.47345 * 303.43303 * 16 15 14 18 18 C 1.53004 * 109.47117 * 183.43616 * 16 15 14 19 19 N 1.46496 * 109.46786 * 64.99780 * 18 16 15 20 20 C 1.36947 * 119.99875 * 179.97438 * 19 18 16 21 21 H 1.08000 * 119.99500 * 0.02562 * 20 19 18 22 22 C 1.38805 * 119.99790 * 180.02562 * 20 19 18 23 23 N 1.31619 * 120.00618 * 0.02562 * 22 20 19 24 24 Si 1.86808 * 119.99488 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47049 * 90.00440 * 24 22 20 26 26 H 1.48500 * 109.46790 * 210.00177 * 24 22 20 27 27 H 1.48498 * 109.47353 * 330.00067 * 24 22 20 28 28 C 1.45125 * 118.75470 * 353.60356 * 11 9 8 29 29 H 1.09003 * 109.47607 * 270.00128 * 1 2 3 30 30 H 1.09005 * 109.47389 * 29.99661 * 1 2 3 31 31 H 1.09002 * 109.47629 * 149.99707 * 1 2 3 32 32 H 0.96705 * 113.99281 * 89.98461 * 5 4 3 33 33 H 1.09000 * 109.16710 * 17.97570 * 12 11 9 34 34 H 1.09006 * 109.16825 * 258.77037 * 12 11 9 35 35 H 1.08992 * 109.45155 * 199.99148 * 13 12 11 36 36 H 1.08991 * 109.45348 * 80.05596 * 13 12 11 37 37 H 1.08999 * 109.59311 * 211.18171 * 14 13 12 38 38 H 1.09001 * 109.59229 * 331.47845 * 14 13 12 39 39 H 1.08994 * 109.47140 * 185.00222 * 18 16 15 40 40 H 1.09009 * 109.46929 * 305.00475 * 18 16 15 41 41 H 0.96997 * 120.00684 * 0.02562 * 19 18 16 42 42 H 0.96996 * 120.00027 * 180.02562 * 23 22 20 43 43 H 1.08997 * 109.46195 * 149.26178 * 28 11 9 44 44 H 1.08999 * 109.46190 * 29.29787 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2904 1.0776 0.0000 4 6 3.5531 0.7094 0.0006 5 8 4.6149 1.5465 0.0002 6 7 3.6181 -0.6385 0.0068 7 1 4.4242 -1.1780 0.0123 8 6 2.3109 -1.1058 -0.0005 9 6 1.8792 -2.5044 -0.0006 10 8 0.7635 -2.7970 -0.3901 11 7 2.7167 -3.4683 0.4305 12 6 2.2081 -4.8474 0.5540 13 6 3.2402 -5.8633 0.0430 14 6 3.9082 -5.3242 -1.2058 15 8 5.0756 -4.6073 -0.8264 16 6 4.9747 -3.2699 -0.5010 17 1 4.5284 -2.7260 -1.3336 18 6 6.3686 -2.7083 -0.2137 19 7 7.1735 -2.7499 -1.4371 20 6 8.4652 -2.2952 -1.4227 21 1 8.8905 -1.9064 -0.5093 22 6 9.2275 -2.3342 -2.5820 23 7 8.7090 -2.8076 -3.6952 24 14 10.9898 -1.7146 -2.5621 25 1 11.9040 -2.8335 -2.2196 26 1 11.3417 -1.1803 -3.9022 27 1 11.1244 -0.6375 -1.5488 28 6 4.0850 -3.1101 0.7558 29 1 -0.3634 0.0000 1.0277 30 1 -0.3634 0.8900 -0.5138 31 1 -0.3634 -0.8899 -0.5139 32 1 4.9234 1.7907 0.8836 33 1 1.2918 -4.9444 -0.0283 34 1 1.9892 -5.0557 1.6014 35 1 2.7399 -6.8031 -0.1900 36 1 3.9931 -6.0342 0.8123 37 1 4.1838 -6.1519 -1.8593 38 1 3.2218 -4.6584 -1.7290 39 1 6.2814 -1.6773 0.1290 40 1 6.8501 -3.3084 0.5585 41 1 6.7913 -3.0988 -2.2575 42 1 9.2419 -2.8352 -4.5052 43 1 4.4532 -3.7634 1.5467 44 1 4.1185 -2.0748 1.0951 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001200747865.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:01 Heat of formation + Delta-G solvation = -40.965833 kcal Electronic energy + Delta-G solvation = -29241.485674 eV Core-core repulsion = 25196.055758 eV Total energy + Delta-G solvation = -4045.429916 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.70014 -41.52230 -39.86794 -38.46673 -36.84889 -36.72217 -35.11932 -33.90933 -32.91283 -31.79675 -30.58861 -28.40105 -27.87531 -26.62721 -24.81922 -23.98950 -23.03342 -22.65802 -21.79520 -21.00312 -19.81782 -19.30440 -18.64415 -18.15885 -17.90326 -17.67646 -16.97215 -16.72019 -16.66111 -16.06751 -16.01191 -15.30920 -15.17986 -14.88890 -14.82047 -14.53340 -14.25950 -14.08084 -13.86872 -13.67234 -13.43936 -13.40729 -13.21933 -13.05394 -12.81570 -12.79392 -12.45718 -12.16312 -12.02382 -11.85162 -11.69540 -11.53773 -11.22221 -11.06851 -11.00952 -10.72869 -9.95293 -9.51345 -9.06358 -7.96409 -5.27038 -0.03914 1.26922 1.36515 1.47691 1.49537 1.57649 1.68340 1.97525 2.51337 2.54066 2.72985 3.19517 3.35834 3.38608 3.57577 3.69547 3.73638 3.85233 3.92437 4.00103 4.11958 4.22076 4.28104 4.38980 4.39382 4.48058 4.63648 4.68821 4.77756 4.80295 4.89061 4.93523 4.94976 4.99914 5.13549 5.28429 5.42226 5.47292 5.61742 5.94300 6.22946 6.51269 6.55367 6.60965 6.79423 7.30544 8.01956 8.25135 9.27091 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.011830 B = 0.004534 C = 0.003483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2366.318448 B = 6174.084205 C = 8036.138641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.106 3.894 3 N -0.510 5.510 4 C 0.415 3.585 5 O -0.444 6.444 6 N -0.557 5.557 7 H 0.431 0.569 8 C -0.107 4.107 9 C 0.594 3.406 10 O -0.542 6.542 11 N -0.601 5.601 12 C 0.108 3.892 13 C -0.153 4.153 14 C 0.064 3.936 15 O -0.385 6.385 16 C 0.085 3.915 17 H 0.024 0.976 18 C 0.157 3.843 19 N -0.739 5.739 20 C -0.247 4.247 21 H 0.085 0.915 22 C -0.074 4.074 23 N -0.970 5.970 24 Si 0.974 3.026 25 H -0.287 1.287 26 H -0.299 1.299 27 H -0.264 1.264 28 C 0.059 3.941 29 H 0.093 0.907 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.432 0.568 33 H 0.091 0.909 34 H 0.095 0.905 35 H 0.116 0.884 36 H 0.087 0.913 37 H 0.099 0.901 38 H 0.036 0.964 39 H 0.043 0.957 40 H 0.046 0.954 41 H 0.373 0.627 42 H 0.250 0.750 43 H 0.125 0.875 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.148 -1.103 14.675 21.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.029 4.029 3 N -0.242 5.242 4 C 0.114 3.886 5 O -0.249 6.249 6 N -0.185 5.185 7 H 0.281 0.719 8 C -0.221 4.221 9 C 0.383 3.617 10 O -0.420 6.420 11 N -0.332 5.332 12 C -0.012 4.012 13 C -0.191 4.191 14 C -0.012 4.012 15 O -0.303 6.303 16 C 0.024 3.976 17 H 0.042 0.958 18 C 0.030 3.970 19 N -0.381 5.381 20 C -0.378 4.378 21 H 0.102 0.898 22 C -0.266 4.266 23 N -0.620 5.620 24 Si 0.803 3.197 25 H -0.214 1.214 26 H -0.226 1.226 27 H -0.189 1.189 28 C -0.066 4.066 29 H 0.111 0.889 30 H 0.103 0.897 31 H 0.104 0.896 32 H 0.294 0.706 33 H 0.109 0.891 34 H 0.114 0.886 35 H 0.135 0.865 36 H 0.105 0.895 37 H 0.117 0.883 38 H 0.054 0.946 39 H 0.060 0.940 40 H 0.064 0.936 41 H 0.204 0.796 42 H 0.059 0.941 43 H 0.143 0.857 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -15.620 -0.480 14.010 20.988 hybrid contribution 1.810 -0.513 -0.454 1.935 sum -13.809 -0.993 13.557 19.377 Atomic orbital electron populations 1.20405 0.84485 1.04336 1.04236 1.21370 0.97880 0.85697 0.98001 1.70295 0.99132 1.30745 1.24033 1.20496 0.87755 0.79455 1.00915 1.84861 1.42482 1.60923 1.36667 1.45073 1.09225 1.08260 1.55903 0.71895 1.20758 0.83501 0.95407 1.22407 1.16917 0.84820 0.82974 0.76964 1.90786 1.21038 1.81968 1.48192 1.47817 1.10495 1.09488 1.65412 1.22110 0.97844 0.77883 1.03370 1.22424 0.98975 0.99565 0.98117 1.22412 0.86340 0.95372 0.97064 1.86401 1.35402 1.21690 1.86854 1.22283 0.96073 0.84205 0.94989 0.95804 1.20881 0.88520 0.97173 0.90449 1.42398 1.11629 1.75887 1.08224 1.19663 0.89580 1.32784 0.95779 0.89756 1.25602 1.02644 1.02808 0.95563 1.69840 1.37905 1.53614 1.00674 0.85133 0.79905 0.78067 0.76597 1.21395 1.22617 1.18852 1.22980 0.81110 1.03819 0.98699 0.88853 0.89723 0.89584 0.70573 0.89112 0.88639 0.86531 0.89487 0.88287 0.94590 0.93970 0.93579 0.79552 0.94093 0.85704 0.88534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.68 10.11 71.23 0.72 -0.96 16 2 C 0.11 2.93 7.13 41.99 0.30 3.23 16 3 N -0.51 -14.95 11.22 -301.67 -3.39 -18.34 16 4 C 0.42 11.42 9.43 179.99 1.70 13.12 16 5 O -0.44 -10.35 13.62 -84.89 -1.16 -11.50 16 6 N -0.56 -14.92 4.84 -300.13 -1.45 -16.37 16 7 H 0.43 11.29 2.93 -92.71 -0.27 11.02 16 8 C -0.11 -2.97 6.49 39.80 0.26 -2.71 16 9 C 0.59 16.23 7.52 86.36 0.65 16.88 16 10 O -0.54 -16.49 14.27 -4.48 -0.06 -16.55 16 11 N -0.60 -13.56 2.19 -822.97 -1.81 -15.36 16 12 C 0.11 1.90 6.19 86.38 0.53 2.44 16 13 C -0.15 -2.56 5.79 30.31 0.18 -2.38 16 14 C 0.06 1.61 6.37 71.50 0.46 2.06 16 15 O -0.38 -12.44 9.38 -117.89 -1.11 -13.54 16 16 C 0.09 2.61 1.75 31.21 0.05 2.66 16 17 H 0.02 0.86 7.73 -2.39 -0.02 0.84 16 18 C 0.16 5.62 5.76 86.38 0.50 6.12 16 19 N -0.74 -36.53 5.54 -343.45 -1.90 -38.43 16 20 C -0.25 -13.31 9.99 84.03 0.84 -12.47 16 21 H 0.08 4.23 7.83 -2.91 -0.02 4.21 16 22 C -0.07 -4.19 5.50 84.86 0.47 -3.72 16 23 N -0.97 -59.66 13.06 21.65 0.28 -59.37 16 24 Si 0.97 45.34 29.55 68.60 2.03 47.36 16 25 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 26 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 27 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 28 C 0.06 1.30 4.43 87.25 0.39 1.69 16 29 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 31 H 0.09 2.02 6.30 -2.39 -0.02 2.01 16 32 H 0.43 4.63 9.06 -74.05 -0.67 3.96 16 33 H 0.09 1.75 6.94 -2.39 -0.02 1.74 16 34 H 0.10 1.24 8.14 -2.38 -0.02 1.22 16 35 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.09 1.43 8.01 -2.39 -0.02 1.41 16 37 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 38 H 0.04 1.00 7.41 -2.39 -0.02 0.98 16 39 H 0.04 1.36 6.91 -2.39 -0.02 1.35 16 40 H 0.05 1.61 8.14 -2.38 -0.02 1.59 16 41 H 0.37 20.52 7.65 -92.71 -0.71 19.81 16 42 H 0.25 14.98 8.31 -92.71 -0.77 14.21 16 43 H 0.12 2.21 8.11 -2.39 -0.02 2.19 16 44 H 0.10 2.00 4.40 -2.39 -0.01 1.99 16 Total: -1.00 -75.24 351.92 -2.10 -77.34 By element: Atomic # 1 Polarization: 39.40 SS G_CDS: -0.57 Total: 38.83 kcal Atomic # 6 Polarization: 18.91 SS G_CDS: 7.04 Total: 25.95 kcal Atomic # 7 Polarization: -139.62 SS G_CDS: -8.26 Total: -147.88 kcal Atomic # 8 Polarization: -39.27 SS G_CDS: -2.33 Total: -41.60 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.36 kcal Total: -75.24 -2.10 -77.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200747865.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.372 kcal (2) G-P(sol) polarization free energy of solvation -75.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds