Wall clock time and date at job start Fri Apr 10 2020 18:33:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08991 * 109.47592 * 2 1 4 4 C 1.50703 * 109.46856 * 120.00725 * 2 1 3 5 5 O 1.21284 * 120.00096 * 107.22195 * 4 2 1 6 6 N 1.34780 * 119.99788 * 287.22136 * 4 2 1 7 7 C 1.47510 * 118.75654 * 353.70395 * 6 4 2 8 8 C 1.53568 * 111.02501 * 138.34796 * 7 6 4 9 9 C 1.51532 * 109.58377 * 320.02044 * 8 7 6 10 10 O 1.42159 * 108.75296 * 91.40296 * 9 8 7 11 11 C 1.38018 * 119.44093 * 272.77480 * 10 9 8 12 12 H 1.09012 * 109.46778 * 303.42103 * 11 10 9 13 13 C 1.52998 * 109.47026 * 183.43121 * 11 10 9 14 14 N 1.46498 * 109.47260 * 64.98577 * 13 11 10 15 15 C 1.36939 * 120.00051 * 180.02562 * 14 13 11 16 16 H 1.08001 * 119.99700 * 0.02562 * 15 14 13 17 17 C 1.38808 * 120.00068 * 179.97438 * 15 14 13 18 18 N 1.31621 * 119.99995 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00286 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.46850 * 59.99843 * 19 17 15 21 21 H 1.48498 * 109.47324 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.47130 * 300.00355 * 19 17 15 23 23 C 1.45121 * 118.75775 * 173.68775 * 6 4 2 24 24 C 1.53002 * 109.46956 * 239.99965 * 2 1 3 25 25 F 1.39904 * 109.47421 * 300.00888 * 24 2 1 26 26 F 1.39909 * 109.46808 * 60.00198 * 24 2 1 27 27 F 1.39895 * 109.47422 * 180.02562 * 24 2 1 28 28 H 1.09001 * 109.46958 * 57.50225 * 1 2 3 29 29 H 1.08990 * 109.47642 * 177.50982 * 1 2 3 30 30 H 1.09002 * 109.46904 * 297.51307 * 1 2 3 31 31 H 1.08998 * 109.16543 * 258.74824 * 7 6 4 32 32 H 1.09004 * 109.16410 * 18.00276 * 7 6 4 33 33 H 1.08994 * 109.45390 * 80.06099 * 8 7 6 34 34 H 1.09004 * 109.45055 * 200.01184 * 8 7 6 35 35 H 1.09000 * 109.59719 * 211.18458 * 9 8 7 36 36 H 1.09004 * 109.59398 * 331.62521 * 9 8 7 37 37 H 1.09000 * 109.46674 * 304.98894 * 13 11 10 38 38 H 1.08996 * 109.46846 * 184.98918 * 13 11 10 39 39 H 0.96998 * 120.00327 * 0.02562 * 14 13 11 40 40 H 0.97004 * 120.00210 * 180.02562 * 18 17 15 41 41 H 1.08994 * 109.46103 * 149.28196 * 23 6 4 42 42 H 1.09003 * 109.44676 * 29.31616 * 23 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 6 2.0323 -0.7106 1.2304 5 8 2.5276 -1.8135 1.1340 6 7 1.9310 -0.1204 2.4379 7 6 1.4550 1.2740 2.5086 8 6 0.4777 1.4639 3.6778 9 6 -0.4365 0.2594 3.7764 10 8 0.1486 -0.6871 4.6612 11 6 1.0452 -1.6131 4.1678 12 1 0.5756 -2.1816 3.3650 13 6 1.4640 -2.5655 5.2896 14 7 0.3032 -3.3447 5.7274 15 6 0.4371 -4.2685 6.7293 16 1 1.3984 -4.4223 7.1970 17 6 -0.6628 -5.0064 7.1445 18 7 -1.8344 -4.8186 6.5748 19 14 -0.4804 -6.2661 8.5117 20 1 -0.0144 -5.5897 9.7489 21 1 -1.7922 -6.9138 8.7663 22 1 0.5104 -7.2956 8.1073 23 6 2.2941 -0.8810 3.6193 24 6 2.0400 -0.7213 -1.2493 25 9 1.5735 -2.0402 -1.2494 26 9 1.5736 -0.0617 -2.3916 27 9 3.4389 -0.7218 -1.2491 28 1 -0.3633 0.5521 -0.8668 29 1 -0.3634 -1.0266 -0.0446 30 1 -0.3633 0.4747 0.9115 31 1 2.3092 1.9372 2.6448 32 1 0.9503 1.5275 1.5764 33 1 1.0386 1.5709 4.6062 34 1 -0.1199 2.3598 3.5095 35 1 -1.4080 0.5683 4.1621 36 1 -0.5582 -0.1889 2.7903 37 1 1.8524 -1.9892 6.1293 38 1 2.2375 -3.2404 4.9233 39 1 -0.5602 -3.2063 5.3076 40 1 -2.6031 -5.3340 6.8651 41 1 2.6825 -0.2051 4.3811 42 1 3.0589 -1.6127 3.3590 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001201162249.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:07 Heat of formation + Delta-G solvation = -209.834462 kcal Electronic energy + Delta-G solvation = -29562.134658 eV Core-core repulsion = 24935.232557 eV Total energy + Delta-G solvation = -4626.902101 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.145 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -50.28784 -47.82378 -47.66676 -40.94083 -38.70390 -35.94699 -34.67108 -34.36889 -32.87256 -30.95566 -28.94960 -26.87813 -26.84445 -25.43965 -23.68100 -22.38369 -21.75391 -21.03069 -19.67647 -18.96402 -18.56687 -17.70988 -17.34573 -17.08154 -16.61422 -16.20700 -15.83955 -15.38822 -14.83786 -14.63113 -14.52889 -14.29906 -14.24139 -14.12500 -13.88020 -13.83003 -13.72422 -13.40565 -13.21139 -13.11197 -12.90270 -12.61038 -12.43327 -12.31450 -12.09552 -11.86535 -11.68196 -11.41970 -11.01610 -10.82582 -10.75312 -10.32781 -10.13952 -9.98087 -9.67123 -9.49918 -8.82319 -8.71176 -6.84941 -5.69057 -2.97447 2.14755 2.23502 2.69581 3.39346 3.49316 3.52957 3.54366 3.60209 3.72620 3.88015 4.18579 4.40890 4.43567 4.52120 4.55396 4.65092 4.79526 4.96323 5.06630 5.13717 5.21184 5.24727 5.33653 5.37186 5.51959 5.57149 5.63810 5.75308 5.87723 5.92139 6.03085 6.31415 6.32554 6.64242 6.75703 6.92171 7.74440 7.75432 7.93429 8.49151 9.60682 10.18264 10.54093 11.53810 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.018070 B = 0.003266 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.162731 B = 8571.252490 C = 9216.990389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.164 4.164 3 H 0.135 0.865 4 C 0.515 3.485 5 O -0.509 6.509 6 N -0.601 5.601 7 C 0.096 3.904 8 C -0.167 4.167 9 C 0.070 3.930 10 O -0.367 6.367 11 C 0.089 3.911 12 H 0.052 0.948 13 C 0.166 3.834 14 N -0.726 5.726 15 C -0.239 4.239 16 H 0.070 0.930 17 C -0.013 4.013 18 N -0.933 5.933 19 Si 0.908 3.092 20 H -0.286 1.286 21 H -0.291 1.291 22 H -0.286 1.286 23 C 0.079 3.921 24 C 0.472 3.528 25 F -0.165 7.165 26 F -0.182 7.182 27 F -0.177 7.177 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.047 0.953 37 H 0.028 0.972 38 H 0.035 0.965 39 H 0.387 0.613 40 H 0.255 0.745 41 H 0.087 0.913 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.743 19.021 -15.704 25.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.187 4.187 3 H 0.153 0.847 4 C 0.300 3.700 5 O -0.383 6.383 6 N -0.334 5.334 7 C -0.026 4.026 8 C -0.206 4.206 9 C -0.006 4.006 10 O -0.285 6.285 11 C 0.029 3.971 12 H 0.070 0.930 13 C 0.038 3.962 14 N -0.370 5.370 15 C -0.370 4.370 16 H 0.088 0.912 17 C -0.209 4.209 18 N -0.581 5.581 19 Si 0.739 3.261 20 H -0.213 1.213 21 H -0.217 1.217 22 H -0.213 1.213 23 C -0.044 4.044 24 C 0.418 3.582 25 F -0.147 7.147 26 F -0.164 7.164 27 F -0.158 7.158 28 H 0.104 0.896 29 H 0.100 0.900 30 H 0.106 0.894 31 H 0.091 0.909 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.106 0.894 35 H 0.109 0.891 36 H 0.066 0.934 37 H 0.046 0.954 38 H 0.053 0.947 39 H 0.220 0.780 40 H 0.064 0.936 41 H 0.106 0.894 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 6.058 18.305 -15.447 24.706 hybrid contribution -0.056 -0.512 0.078 0.521 sum 6.002 17.793 -15.369 24.266 Atomic orbital electron populations 1.21986 0.88952 1.05476 1.04969 1.22674 1.01651 1.02755 0.91599 0.84721 1.19844 0.79515 0.86309 0.84297 1.90849 1.42588 1.19313 1.85538 1.47785 1.65729 1.13829 1.06080 1.22204 0.98391 0.81603 1.00449 1.22526 0.98660 1.00190 0.99193 1.22187 0.95860 0.88261 0.94336 1.86457 1.59565 1.44857 1.37579 1.22299 0.88221 0.89034 0.97580 0.93007 1.20607 0.91779 0.90909 0.92928 1.42208 1.07024 1.44321 1.43455 1.19187 0.94994 1.12354 1.10475 0.91214 1.24726 0.95568 1.00460 1.00173 1.69666 0.99567 1.44244 1.44670 0.86257 0.76526 0.81376 0.81964 1.21300 1.21723 1.21276 1.22527 0.99456 0.96438 0.85945 1.19764 0.75803 0.78232 0.84447 1.93248 1.88140 1.36692 1.96586 1.93184 1.88551 1.80886 1.53733 1.93208 1.29505 1.96413 1.96685 0.89610 0.90010 0.89373 0.90904 0.89673 0.89659 0.89448 0.89096 0.93430 0.95423 0.94701 0.77960 0.93553 0.89442 0.88405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.11 8.54 37.16 0.32 -0.79 16 2 C -0.16 -1.44 1.83 -91.77 -0.17 -1.61 16 3 H 0.14 0.71 7.06 -51.93 -0.37 0.35 16 4 C 0.52 6.42 6.61 -10.98 -0.07 6.35 16 5 O -0.51 -8.60 14.33 5.55 0.08 -8.52 16 6 N -0.60 -6.63 2.19 -172.47 -0.38 -7.00 16 7 C 0.10 0.67 5.43 -3.19 -0.02 0.66 16 8 C -0.17 -1.32 5.78 -27.18 -0.16 -1.48 16 9 C 0.07 0.82 6.38 36.42 0.23 1.05 16 10 O -0.37 -6.14 9.38 -26.54 -0.25 -6.39 16 11 C 0.09 1.52 2.68 -25.78 -0.07 1.45 16 12 H 0.05 1.00 8.14 -51.92 -0.42 0.58 16 13 C 0.17 3.48 5.92 -4.04 -0.02 3.46 16 14 N -0.73 -19.29 5.54 -59.91 -0.33 -19.62 16 15 C -0.24 -6.92 9.99 -15.06 -0.15 -7.07 16 16 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 17 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 18 N -0.93 -28.97 13.06 55.49 0.72 -28.25 16 19 Si 0.91 22.91 29.55 -169.99 -5.02 17.89 16 20 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 21 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 22 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 23 C 0.08 1.07 4.92 -3.83 -0.02 1.05 16 24 C 0.47 5.23 2.44 37.16 0.09 5.32 16 25 F -0.17 -2.28 15.56 2.25 0.04 -2.25 16 26 F -0.18 -1.77 16.84 2.25 0.04 -1.73 16 27 F -0.18 -2.22 16.71 2.25 0.04 -2.18 16 28 H 0.09 0.43 7.87 -51.93 -0.41 0.02 16 29 H 0.08 0.74 7.73 -51.93 -0.40 0.33 16 30 H 0.09 0.52 4.82 -51.93 -0.25 0.27 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.09 0.40 4.31 -51.93 -0.22 0.17 16 33 H 0.08 0.78 8.01 -51.93 -0.42 0.36 16 34 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.05 0.53 5.91 -51.93 -0.31 0.23 16 37 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.39 10.91 7.65 -40.82 -0.31 10.60 16 40 H 0.25 7.63 8.31 -40.82 -0.34 7.29 16 41 H 0.09 1.04 8.11 -51.93 -0.42 0.62 16 42 H 0.10 1.44 7.19 -51.93 -0.37 1.06 16 LS Contribution 344.18 15.07 5.19 5.19 Total: -1.00 -35.25 344.18 -5.58 -40.83 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -5.56 Total: 4.13 kcal Atomic # 6 Polarization: 8.04 SS G_CDS: -0.13 Total: 7.90 kcal Atomic # 7 Polarization: -54.89 SS G_CDS: 0.01 Total: -54.87 kcal Atomic # 8 Polarization: -14.74 SS G_CDS: -0.17 Total: -14.91 kcal Atomic # 9 Polarization: -6.27 SS G_CDS: 0.11 Total: -6.15 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -5.02 Total: 17.89 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -35.25 -5.58 -40.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201162249.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -169.008 kcal (2) G-P(sol) polarization free energy of solvation -35.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -209.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds