Wall clock time and date at job start Fri Apr 10 2020 18:31:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.87115 * 2 1 4 4 C 1.54330 * 109.87917 * 238.83057 * 2 1 3 5 5 C 1.55150 * 102.94284 * 262.77626 * 4 2 1 6 6 H 1.09003 * 111.00983 * 82.57196 * 5 4 2 7 7 N 1.46498 * 111.00598 * 206.38836 * 5 4 2 8 8 C 1.36938 * 120.00244 * 204.99794 * 7 5 4 9 9 H 1.08003 * 120.00068 * 0.02562 * 8 7 5 10 10 C 1.38811 * 120.00193 * 179.97438 * 8 7 5 11 11 N 1.31617 * 119.99843 * 0.02562 * 10 8 7 12 12 Si 1.86805 * 120.00033 * 180.02562 * 10 8 7 13 13 H 1.48504 * 109.46969 * 359.97438 * 12 10 8 14 14 H 1.48500 * 109.47158 * 119.99800 * 12 10 8 15 15 H 1.48500 * 109.46686 * 239.99989 * 12 10 8 16 16 C 1.55135 * 101.48545 * 324.33254 * 5 4 2 17 17 N 1.47018 * 109.88438 * 121.02213 * 2 1 3 18 18 C 1.34770 * 125.65135 * 300.43698 * 17 2 1 19 19 O 1.21287 * 119.99582 * 0.02562 * 18 17 2 20 20 C 1.50695 * 120.00638 * 179.97438 * 18 17 2 21 21 N 1.46495 * 109.47644 * 180.02562 * 20 18 17 22 22 C 1.46412 * 119.53259 * 90.00007 * 21 20 18 23 23 C 1.53042 * 109.51684 * 144.16841 * 22 21 20 24 24 C 1.50806 * 109.18523 * 46.69669 * 23 22 21 25 25 O 1.21232 * 120.02199 * 145.48833 * 24 23 22 26 26 N 1.34564 * 119.96283 * 325.76353 * 24 23 22 27 27 C 1.34289 * 119.53581 * 270.02494 * 21 20 18 28 28 O 1.21532 * 119.20957 * 5.68645 * 27 21 20 29 29 H 1.08996 * 109.46478 * 300.42842 * 1 2 3 30 30 H 1.08999 * 109.47131 * 60.42920 * 1 2 3 31 31 H 1.09002 * 109.46750 * 180.43416 * 1 2 3 32 32 H 1.08999 * 110.71921 * 21.13810 * 4 2 1 33 33 H 1.08998 * 110.71826 * 144.23196 * 4 2 1 34 34 H 0.97005 * 120.00087 * 24.99804 * 7 5 4 35 35 H 0.97006 * 120.00008 * 180.02562 * 11 10 8 36 36 H 1.09002 * 110.49392 * 278.45193 * 16 5 4 37 37 H 1.09000 * 110.34102 * 156.06242 * 16 5 4 38 38 H 1.09007 * 109.47020 * 59.99808 * 20 18 17 39 39 H 1.09002 * 109.46947 * 300.00682 * 20 18 17 40 40 H 1.08999 * 109.46607 * 24.16132 * 22 21 20 41 41 H 1.08994 * 109.46511 * 264.17912 * 22 21 20 42 42 H 1.09005 * 109.52128 * 286.78376 * 23 22 21 43 43 H 1.09003 * 109.52261 * 166.60697 * 23 22 21 44 44 H 0.97006 * 119.50069 * 184.43008 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0549 -0.7512 -1.2418 5 6 2.3518 -2.1704 -0.6897 6 1 1.4451 -2.7746 -0.6569 7 7 3.3930 -2.8335 -1.4787 8 6 3.4558 -4.2009 -1.5179 9 1 2.7375 -4.7905 -0.9676 10 6 4.4420 -4.8292 -2.2659 11 7 5.3171 -4.1107 -2.9369 12 14 4.5272 -6.6945 -2.3200 13 1 3.4384 -7.2642 -1.4861 14 1 4.3706 -7.1567 -3.7225 15 1 5.8406 -7.1454 -1.7938 16 6 2.8614 -1.8456 0.7391 17 7 2.0301 -0.7125 1.1848 18 6 1.7756 -0.3813 2.4661 19 8 1.0787 0.5791 2.7172 20 6 2.3558 -1.2048 3.5869 21 7 1.9350 -0.6443 4.8733 22 6 0.6949 -1.1136 5.4940 23 6 0.8676 -1.1545 7.0141 24 6 1.5028 0.1330 7.4756 25 8 1.1958 0.6111 8.5465 26 7 2.4066 0.7538 6.6955 27 6 2.6920 0.2931 5.4663 28 8 3.6583 0.7355 4.8767 29 1 -0.3632 0.5205 0.8861 30 1 -0.3633 0.5071 -0.8938 31 1 -0.3633 -1.0277 0.0078 32 1 1.2917 -0.7916 -2.0191 33 1 2.9639 -0.2834 -1.6198 34 1 4.0379 -2.3040 -1.9732 35 1 6.0060 -4.5498 -3.4600 36 1 3.9124 -1.5580 0.7133 37 1 2.7179 -2.7031 1.3966 38 1 3.4439 -1.1908 3.5224 39 1 2.0003 -2.2319 3.5047 40 1 0.4612 -2.1134 5.1281 41 1 -0.1185 -0.4343 5.2392 42 1 1.5076 -1.9942 7.2855 43 1 -0.1070 -1.2702 7.4885 44 1 2.8587 1.5460 7.0258 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989650516.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:37 Heat of formation + Delta-G solvation = -71.251326 kcal Electronic energy + Delta-G solvation = -28066.394069 eV Core-core repulsion = 24019.650875 eV Total energy + Delta-G solvation = -4046.743194 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.94157 -40.06808 -39.12465 -37.53772 -36.37449 -34.89707 -34.23866 -32.28565 -31.53479 -31.29958 -28.46657 -27.73178 -25.51163 -25.40543 -24.00453 -23.40307 -21.98376 -20.36349 -19.52237 -18.82434 -18.52545 -17.99385 -17.43406 -17.26906 -16.65710 -15.89431 -15.64694 -15.33738 -15.04254 -14.81425 -14.68629 -14.56262 -14.19047 -13.67863 -13.45129 -13.28331 -13.09392 -12.99562 -12.91777 -12.52630 -12.37106 -12.10807 -11.89547 -11.71390 -11.25806 -11.05626 -10.98691 -10.84079 -10.70082 -10.57229 -10.49987 -10.30244 -10.09946 -10.05887 -9.83511 -9.16252 -9.01110 -8.42784 -7.16573 -5.91995 -3.23405 1.41632 1.96568 2.65228 2.73112 2.91640 3.21257 3.34108 3.39744 3.42444 3.95747 4.11691 4.41510 4.47947 4.55214 4.62705 4.89545 4.96384 5.04414 5.08099 5.18981 5.23527 5.30095 5.42210 5.53715 5.56224 5.63244 5.76639 5.78425 5.80174 6.01642 6.06185 6.13728 6.15755 6.23506 6.38291 6.47008 6.57926 6.77487 7.04245 7.18040 7.56036 7.71538 7.86914 8.24359 8.27880 9.37303 9.90865 10.25324 11.29860 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.016542 B = 0.002888 C = 0.002651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.263714 B = 9691.630544 C =10558.586461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.139 3.861 3 H 0.069 0.931 4 C -0.139 4.139 5 C 0.176 3.824 6 H 0.069 0.931 7 N -0.712 5.712 8 C -0.250 4.250 9 H 0.073 0.927 10 C -0.008 4.008 11 N -0.928 5.928 12 Si 0.908 3.092 13 H -0.279 1.279 14 H -0.291 1.291 15 H -0.290 1.290 16 C 0.068 3.932 17 N -0.606 5.606 18 C 0.512 3.488 19 O -0.543 6.543 20 C 0.114 3.886 21 N -0.598 5.598 22 C 0.109 3.891 23 C -0.157 4.157 24 C 0.525 3.475 25 O -0.506 6.506 26 N -0.674 5.674 27 C 0.714 3.286 28 O -0.548 6.548 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.056 0.944 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.387 0.613 35 H 0.257 0.743 36 H 0.072 0.928 37 H 0.069 0.931 38 H 0.119 0.881 39 H 0.116 0.884 40 H 0.104 0.896 41 H 0.082 0.918 42 H 0.116 0.884 43 H 0.127 0.873 44 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.102 4.873 15.585 19.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.036 3.964 3 H 0.087 0.913 4 C -0.178 4.178 5 C 0.063 3.937 6 H 0.087 0.913 7 N -0.351 5.351 8 C -0.381 4.381 9 H 0.091 0.909 10 C -0.205 4.205 11 N -0.575 5.575 12 Si 0.739 3.261 13 H -0.204 1.204 14 H -0.218 1.218 15 H -0.217 1.217 16 C -0.058 4.058 17 N -0.341 5.341 18 C 0.299 3.701 19 O -0.421 6.421 20 C -0.013 4.013 21 N -0.335 5.335 22 C -0.013 4.013 23 C -0.198 4.198 24 C 0.313 3.687 25 O -0.379 6.379 26 N -0.343 5.343 27 C 0.415 3.585 28 O -0.422 6.422 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.098 0.902 33 H 0.094 0.906 34 H 0.222 0.778 35 H 0.067 0.933 36 H 0.091 0.909 37 H 0.088 0.912 38 H 0.137 0.863 39 H 0.134 0.866 40 H 0.123 0.877 41 H 0.100 0.900 42 H 0.134 0.866 43 H 0.145 0.855 44 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -10.231 5.505 15.967 19.747 hybrid contribution 0.623 -0.544 -0.122 0.836 sum -9.608 4.961 15.845 19.183 Atomic orbital electron populations 1.22119 0.95052 1.02172 1.02383 1.21496 0.94316 0.95986 0.84621 0.91313 1.23032 1.01788 0.97144 0.95794 1.21301 0.92770 0.91233 0.88409 0.91345 1.42351 1.33397 1.04078 1.55315 1.19277 1.11296 0.82448 1.25109 0.90880 1.24786 0.97933 0.98032 0.99703 1.69668 1.18938 1.34159 1.34708 0.86121 0.77390 0.85251 0.77372 1.20447 1.21762 1.21743 1.23636 0.95171 0.86884 1.00100 1.48611 1.50032 1.31036 1.04401 1.20588 0.81163 0.85466 0.82883 1.90658 1.39299 1.28747 1.83388 1.21353 1.02924 0.96934 0.80039 1.46545 1.24189 1.41520 1.21230 1.21695 0.86557 1.02553 0.90524 1.22281 1.04829 0.95680 0.96979 1.20983 0.77600 0.86257 0.83883 1.90792 1.59422 1.65712 1.21976 1.44250 1.42346 1.32095 1.15613 1.15507 0.82799 0.79574 0.80570 1.91028 1.28948 1.58771 1.63447 0.91621 0.91999 0.92459 0.90153 0.90567 0.77808 0.93306 0.90936 0.91237 0.86278 0.86616 0.87735 0.90003 0.86618 0.85481 0.73276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.03 9.06 37.16 0.34 -1.69 16 2 C 0.14 1.97 3.49 -66.95 -0.23 1.73 16 3 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 4 C -0.14 -2.05 6.13 -24.90 -0.15 -2.20 16 5 C 0.18 3.01 3.73 -65.66 -0.24 2.76 16 6 H 0.07 1.18 8.09 -51.93 -0.42 0.76 16 7 N -0.71 -15.89 5.24 -51.24 -0.27 -16.15 16 8 C -0.25 -6.28 9.96 -15.06 -0.15 -6.43 16 9 H 0.07 1.76 7.83 -52.48 -0.41 1.35 16 10 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 11 N -0.93 -26.29 13.06 55.49 0.72 -25.57 16 12 Si 0.91 20.85 29.55 -169.99 -5.02 15.83 16 13 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 14 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 15 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 16 C 0.07 1.02 6.40 -2.40 -0.02 1.01 16 17 N -0.61 -8.67 3.08 -162.87 -0.50 -9.17 16 18 C 0.51 7.30 7.70 -10.99 -0.08 7.22 16 19 O -0.54 -9.24 15.33 5.55 0.09 -9.15 16 20 C 0.11 1.22 4.82 -5.20 -0.03 1.20 16 21 N -0.60 -6.07 2.28 -181.16 -0.41 -6.48 16 22 C 0.11 0.69 6.64 -4.07 -0.03 0.66 16 23 C -0.16 -0.82 6.28 -27.81 -0.17 -0.99 16 24 C 0.52 4.80 7.76 -11.03 -0.09 4.71 16 25 O -0.51 -6.15 17.93 5.60 0.10 -6.05 16 26 N -0.67 -6.76 5.18 -16.02 -0.08 -6.84 16 27 C 0.71 8.79 8.21 -87.75 -0.72 8.07 16 28 O -0.55 -8.86 16.66 5.34 0.09 -8.77 16 29 H 0.06 0.92 6.74 -51.93 -0.35 0.57 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.08 1.11 7.83 -51.93 -0.41 0.71 16 33 H 0.08 1.17 8.01 -51.93 -0.42 0.75 16 34 H 0.39 9.35 7.77 -40.82 -0.32 9.04 16 35 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 36 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.07 0.94 7.48 -51.93 -0.39 0.55 16 38 H 0.12 1.37 7.44 -51.92 -0.39 0.99 16 39 H 0.12 0.86 7.53 -51.93 -0.39 0.47 16 40 H 0.10 0.38 7.79 -51.93 -0.40 -0.02 16 41 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.12 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.13 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.43 3.91 8.86 -40.82 -0.36 3.55 16 LS Contribution 365.98 15.07 5.52 5.52 Total: -1.00 -34.26 365.98 -7.80 -42.05 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: -6.35 Total: 9.04 kcal Atomic # 6 Polarization: 17.42 SS G_CDS: -1.67 Total: 15.75 kcal Atomic # 7 Polarization: -63.68 SS G_CDS: -0.54 Total: -64.22 kcal Atomic # 8 Polarization: -24.24 SS G_CDS: 0.27 Total: -23.97 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -34.26 -7.80 -42.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989650516.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.199 kcal (2) G-P(sol) polarization free energy of solvation -34.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds