Wall clock time and date at job start Fri Apr 10 2020 18:31:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.87115 * 2 1 4 4 C 1.54330 * 109.87917 * 238.83057 * 2 1 3 5 5 C 1.55150 * 102.94284 * 262.77626 * 4 2 1 6 6 H 1.09003 * 111.00983 * 82.57196 * 5 4 2 7 7 N 1.46498 * 111.00598 * 206.38836 * 5 4 2 8 8 C 1.36938 * 120.00244 * 204.99794 * 7 5 4 9 9 H 1.08003 * 120.00068 * 0.02562 * 8 7 5 10 10 C 1.38811 * 120.00193 * 179.97438 * 8 7 5 11 11 N 1.31617 * 119.99843 * 0.02562 * 10 8 7 12 12 Si 1.86805 * 120.00033 * 180.02562 * 10 8 7 13 13 H 1.48504 * 109.46969 * 359.97438 * 12 10 8 14 14 H 1.48500 * 109.47158 * 119.99800 * 12 10 8 15 15 H 1.48500 * 109.46686 * 239.99989 * 12 10 8 16 16 C 1.55135 * 101.48545 * 324.33254 * 5 4 2 17 17 N 1.47018 * 109.88438 * 121.02213 * 2 1 3 18 18 C 1.34770 * 125.65135 * 300.43698 * 17 2 1 19 19 O 1.21287 * 119.99582 * 0.02562 * 18 17 2 20 20 C 1.50695 * 120.00638 * 179.97438 * 18 17 2 21 21 N 1.46495 * 109.47644 * 180.02562 * 20 18 17 22 22 C 1.46412 * 119.53259 * 90.00007 * 21 20 18 23 23 C 1.53042 * 109.51684 * 144.16841 * 22 21 20 24 24 C 1.50806 * 109.18523 * 46.69669 * 23 22 21 25 25 O 1.21232 * 120.02199 * 145.48833 * 24 23 22 26 26 N 1.34564 * 119.96283 * 325.76353 * 24 23 22 27 27 C 1.34289 * 119.53581 * 270.02494 * 21 20 18 28 28 O 1.21532 * 119.20957 * 5.68645 * 27 21 20 29 29 H 1.08996 * 109.46478 * 300.42842 * 1 2 3 30 30 H 1.08999 * 109.47131 * 60.42920 * 1 2 3 31 31 H 1.09002 * 109.46750 * 180.43416 * 1 2 3 32 32 H 1.08999 * 110.71921 * 21.13810 * 4 2 1 33 33 H 1.08998 * 110.71826 * 144.23196 * 4 2 1 34 34 H 0.97005 * 120.00087 * 24.99804 * 7 5 4 35 35 H 0.97006 * 120.00008 * 180.02562 * 11 10 8 36 36 H 1.09002 * 110.49392 * 278.45193 * 16 5 4 37 37 H 1.09000 * 110.34102 * 156.06242 * 16 5 4 38 38 H 1.09007 * 109.47020 * 59.99808 * 20 18 17 39 39 H 1.09002 * 109.46947 * 300.00682 * 20 18 17 40 40 H 1.08999 * 109.46607 * 24.16132 * 22 21 20 41 41 H 1.08994 * 109.46511 * 264.17912 * 22 21 20 42 42 H 1.09005 * 109.52128 * 286.78376 * 23 22 21 43 43 H 1.09003 * 109.52261 * 166.60697 * 23 22 21 44 44 H 0.97006 * 119.50069 * 184.43008 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0549 -0.7512 -1.2418 5 6 2.3518 -2.1704 -0.6897 6 1 1.4451 -2.7746 -0.6569 7 7 3.3930 -2.8335 -1.4787 8 6 3.4558 -4.2009 -1.5179 9 1 2.7375 -4.7905 -0.9676 10 6 4.4420 -4.8292 -2.2659 11 7 5.3171 -4.1107 -2.9369 12 14 4.5272 -6.6945 -2.3200 13 1 3.4384 -7.2642 -1.4861 14 1 4.3706 -7.1567 -3.7225 15 1 5.8406 -7.1454 -1.7938 16 6 2.8614 -1.8456 0.7391 17 7 2.0301 -0.7125 1.1848 18 6 1.7756 -0.3813 2.4661 19 8 1.0787 0.5791 2.7172 20 6 2.3558 -1.2048 3.5869 21 7 1.9350 -0.6443 4.8733 22 6 0.6949 -1.1136 5.4940 23 6 0.8676 -1.1545 7.0141 24 6 1.5028 0.1330 7.4756 25 8 1.1958 0.6111 8.5465 26 7 2.4066 0.7538 6.6955 27 6 2.6920 0.2931 5.4663 28 8 3.6583 0.7355 4.8767 29 1 -0.3632 0.5205 0.8861 30 1 -0.3633 0.5071 -0.8938 31 1 -0.3633 -1.0277 0.0078 32 1 1.2917 -0.7916 -2.0191 33 1 2.9639 -0.2834 -1.6198 34 1 4.0379 -2.3040 -1.9732 35 1 6.0060 -4.5498 -3.4600 36 1 3.9124 -1.5580 0.7133 37 1 2.7179 -2.7031 1.3966 38 1 3.4439 -1.1908 3.5224 39 1 2.0003 -2.2319 3.5047 40 1 0.4612 -2.1134 5.1281 41 1 -0.1185 -0.4343 5.2392 42 1 1.5076 -1.9942 7.2855 43 1 -0.1070 -1.2702 7.4885 44 1 2.8587 1.5460 7.0258 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989650516.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:36 Heat of formation + Delta-G solvation = -96.771013 kcal Electronic energy + Delta-G solvation = -28067.500686 eV Core-core repulsion = 24019.650875 eV Total energy + Delta-G solvation = -4047.849811 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.76099 -41.19007 -40.04972 -38.75180 -37.25110 -35.94883 -35.72698 -33.36726 -33.01675 -32.22519 -29.95956 -28.67633 -26.68245 -26.02244 -25.74261 -24.33152 -23.13769 -21.64869 -20.46391 -19.75108 -19.35146 -19.24994 -18.80851 -18.29642 -17.59499 -17.02545 -16.73020 -16.45429 -16.16734 -15.86219 -15.68702 -15.50079 -15.34601 -15.05772 -14.67611 -14.45728 -14.29383 -14.08596 -13.86749 -13.61112 -13.21642 -13.09428 -12.97160 -12.93836 -12.78058 -12.55294 -12.21980 -12.08764 -11.98394 -11.90449 -11.66746 -11.41037 -11.40904 -11.39808 -11.17954 -10.91079 -9.95718 -9.64539 -9.00377 -7.89951 -5.19739 0.63340 1.15573 1.54352 1.55472 1.59970 1.64502 1.86417 2.12147 2.20777 2.61639 3.36798 3.41052 3.42647 3.62202 3.84622 3.89413 3.96393 4.02909 4.13357 4.16057 4.33919 4.39964 4.43198 4.52122 4.55425 4.57190 4.75642 4.82362 4.84291 4.92680 4.96380 5.02870 5.08348 5.18814 5.29521 5.36005 5.42567 5.50162 5.61074 6.25858 6.30812 6.40725 6.56933 6.98435 7.15276 7.38577 8.10836 8.33589 9.33365 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.016542 B = 0.002888 C = 0.002651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.263714 B = 9691.630544 C =10558.586461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.138 3.862 3 H 0.059 0.941 4 C -0.129 4.129 5 C 0.170 3.830 6 H 0.076 0.924 7 N -0.725 5.725 8 C -0.236 4.236 9 H 0.087 0.913 10 C -0.074 4.074 11 N -0.970 5.970 12 Si 0.968 3.032 13 H -0.259 1.259 14 H -0.301 1.301 15 H -0.299 1.299 16 C 0.082 3.918 17 N -0.606 5.606 18 C 0.509 3.491 19 O -0.573 6.573 20 C 0.116 3.884 21 N -0.594 5.594 22 C 0.104 3.896 23 C -0.145 4.145 24 C 0.523 3.477 25 O -0.540 6.540 26 N -0.674 5.674 27 C 0.712 3.288 28 O -0.597 6.597 29 H 0.051 0.949 30 H 0.077 0.923 31 H 0.062 0.938 32 H 0.092 0.908 33 H 0.066 0.934 34 H 0.375 0.625 35 H 0.249 0.751 36 H 0.055 0.945 37 H 0.093 0.907 38 H 0.111 0.889 39 H 0.160 0.840 40 H 0.144 0.856 41 H 0.073 0.927 42 H 0.142 0.858 43 H 0.152 0.848 44 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.223 2.984 16.911 21.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.034 3.966 3 H 0.077 0.923 4 C -0.168 4.168 5 C 0.059 3.941 6 H 0.094 0.906 7 N -0.364 5.364 8 C -0.367 4.367 9 H 0.105 0.895 10 C -0.266 4.266 11 N -0.620 5.620 12 Si 0.798 3.202 13 H -0.183 1.183 14 H -0.228 1.228 15 H -0.226 1.226 16 C -0.044 4.044 17 N -0.340 5.340 18 C 0.297 3.703 19 O -0.453 6.453 20 C -0.011 4.011 21 N -0.329 5.329 22 C -0.016 4.016 23 C -0.184 4.184 24 C 0.313 3.687 25 O -0.415 6.415 26 N -0.342 5.342 27 C 0.413 3.587 28 O -0.474 6.474 29 H 0.070 0.930 30 H 0.096 0.904 31 H 0.081 0.919 32 H 0.110 0.890 33 H 0.084 0.916 34 H 0.207 0.793 35 H 0.058 0.942 36 H 0.073 0.927 37 H 0.111 0.889 38 H 0.129 0.871 39 H 0.178 0.822 40 H 0.162 0.838 41 H 0.091 0.909 42 H 0.159 0.841 43 H 0.170 0.830 44 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -12.436 3.603 17.350 21.649 hybrid contribution 1.199 0.164 -0.491 1.306 sum -11.237 3.767 16.859 20.608 Atomic orbital electron populations 1.22018 0.93567 1.02527 1.02518 1.21499 0.95415 0.95343 0.84321 0.92332 1.22930 1.01780 0.95653 0.96393 1.21482 0.91582 0.92029 0.88971 0.90637 1.42511 1.34293 1.03441 1.56115 1.19708 1.10158 0.83803 1.23074 0.89527 1.25532 0.98537 1.01850 1.00691 1.69821 1.20104 1.35511 1.36592 0.85147 0.77347 0.80875 0.76811 1.18299 1.22839 1.22615 1.23300 0.94146 0.87843 0.99086 1.48633 1.49849 1.30771 1.04745 1.21254 0.80495 0.85291 0.83269 1.90649 1.40789 1.30136 1.83738 1.21479 1.02392 0.98265 0.78945 1.46700 1.24876 1.40542 1.20803 1.22022 0.84360 1.04266 0.90997 1.22385 1.06201 0.93735 0.96119 1.21797 0.76687 0.87083 0.83088 1.90782 1.60412 1.66862 1.23407 1.44283 1.42524 1.32152 1.15196 1.15733 0.82534 0.79600 0.80820 1.90994 1.31157 1.60569 1.64693 0.92960 0.90412 0.91864 0.88967 0.91567 0.79308 0.94200 0.92653 0.88870 0.87121 0.82241 0.83824 0.90861 0.84058 0.82990 0.73441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.48 9.06 71.98 0.65 -2.83 16 2 C 0.14 3.71 3.49 45.35 0.16 3.87 16 3 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 4 C -0.13 -3.65 6.13 31.78 0.19 -3.46 16 5 C 0.17 5.52 3.73 46.46 0.17 5.69 16 6 H 0.08 2.39 8.09 -2.39 -0.02 2.37 16 7 N -0.73 -31.82 5.24 -316.01 -1.66 -33.47 16 8 C -0.24 -11.49 9.96 84.03 0.84 -10.66 16 9 H 0.09 3.92 7.83 -2.91 -0.02 3.90 16 10 C -0.07 -3.89 5.50 84.86 0.47 -3.42 16 11 N -0.97 -55.87 13.06 21.65 0.28 -55.58 16 12 Si 0.97 42.51 29.55 68.60 2.03 44.53 16 13 H -0.26 -10.34 7.11 99.48 0.71 -9.64 16 14 H -0.30 -13.55 7.11 99.48 0.71 -12.84 16 15 H -0.30 -13.36 7.11 99.48 0.71 -12.65 16 16 C 0.08 2.30 6.40 86.93 0.56 2.86 16 17 N -0.61 -16.31 3.08 -787.59 -2.42 -18.73 16 18 C 0.51 13.61 7.70 87.66 0.67 14.29 16 19 O -0.57 -18.93 15.33 -3.05 -0.05 -18.98 16 20 C 0.12 2.18 4.82 85.63 0.41 2.59 16 21 N -0.59 -10.67 2.28 -845.63 -1.93 -12.60 16 22 C 0.10 0.93 6.64 86.41 0.57 1.50 16 23 C -0.14 -0.98 6.28 29.90 0.19 -0.79 16 24 C 0.52 8.78 7.76 87.72 0.68 9.46 16 25 O -0.54 -12.64 17.93 -2.88 -0.05 -12.70 16 26 N -0.67 -13.26 5.18 -441.66 -2.29 -15.55 16 27 C 0.71 17.08 8.21 179.34 1.47 18.55 16 28 O -0.60 -19.61 16.66 -3.82 -0.06 -19.68 16 29 H 0.05 1.39 6.74 -2.39 -0.02 1.37 16 30 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.06 1.40 8.14 -2.39 -0.02 1.39 16 32 H 0.09 2.39 7.83 -2.39 -0.02 2.37 16 33 H 0.07 2.02 8.01 -2.39 -0.02 2.00 16 34 H 0.37 18.27 7.77 -92.70 -0.72 17.55 16 35 H 0.25 14.08 8.31 -92.70 -0.77 13.31 16 36 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.09 2.19 7.48 -2.39 -0.02 2.17 16 38 H 0.11 2.37 7.44 -2.38 -0.02 2.35 16 39 H 0.16 1.57 7.53 -2.39 -0.02 1.55 16 40 H 0.14 0.23 7.79 -2.39 -0.02 0.21 16 41 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.14 0.34 8.14 -2.38 -0.02 0.32 16 43 H 0.15 0.37 8.14 -2.39 -0.02 0.35 16 44 H 0.42 8.07 8.86 -92.70 -0.82 7.25 16 Total: -1.00 -76.35 365.98 0.39 -75.95 By element: Atomic # 1 Polarization: 29.64 SS G_CDS: -0.50 Total: 29.15 kcal Atomic # 6 Polarization: 30.62 SS G_CDS: 7.04 Total: 37.66 kcal Atomic # 7 Polarization: -127.92 SS G_CDS: -8.02 Total: -135.93 kcal Atomic # 8 Polarization: -51.19 SS G_CDS: -0.16 Total: -51.35 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.53 kcal Total: -76.35 0.39 -75.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989650516.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.819 kcal (2) G-P(sol) polarization free energy of solvation -76.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds