Wall clock time and date at job start Fri Apr 10 2020 18:31:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.87413 * 2 1 4 4 C 1.54321 * 109.88514 * 121.16953 * 2 1 3 5 5 C 1.55157 * 102.94331 * 97.22220 * 4 2 1 6 6 H 1.09000 * 111.00863 * 277.43010 * 5 4 2 7 7 N 1.46503 * 111.03871 * 153.59291 * 5 4 2 8 8 C 1.36932 * 120.00121 * 161.33157 * 7 5 4 9 9 H 1.07999 * 120.00029 * 0.02562 * 8 7 5 10 10 C 1.38811 * 120.00306 * 179.97438 * 8 7 5 11 11 N 1.31616 * 120.00486 * 180.02562 * 10 8 7 12 12 Si 1.86803 * 119.99763 * 0.02562 * 10 8 7 13 13 H 1.48495 * 109.47346 * 89.99444 * 12 10 8 14 14 H 1.48499 * 109.47040 * 209.99841 * 12 10 8 15 15 H 1.48501 * 109.47023 * 329.99519 * 12 10 8 16 16 C 1.54915 * 101.57970 * 35.50676 * 5 4 2 17 17 N 1.47014 * 109.88588 * 238.98085 * 2 1 3 18 18 C 1.34778 * 125.65105 * 59.55700 * 17 2 1 19 19 O 1.21280 * 119.99826 * 0.02562 * 18 17 2 20 20 C 1.50698 * 120.00118 * 180.02562 * 18 17 2 21 21 N 1.46500 * 109.46857 * 179.97438 * 20 18 17 22 22 C 1.46411 * 119.53752 * 90.00004 * 21 20 18 23 23 C 1.53038 * 109.52299 * 144.12017 * 22 21 20 24 24 C 1.50804 * 109.18275 * 46.69694 * 23 22 21 25 25 O 1.21239 * 120.01614 * 145.79233 * 24 23 22 26 26 N 1.34563 * 119.96708 * 325.76684 * 24 23 22 27 27 C 1.34287 * 119.53838 * 269.72137 * 21 20 18 28 28 O 1.21537 * 119.20753 * 5.71971 * 27 21 20 29 29 H 1.09002 * 109.47153 * 179.56545 * 1 2 3 30 30 H 1.09001 * 109.46832 * 59.56735 * 1 2 3 31 31 H 1.09004 * 109.47261 * 299.56717 * 1 2 3 32 32 H 1.08998 * 110.73022 * 215.59048 * 4 2 1 33 33 H 1.09008 * 110.71652 * 338.86563 * 4 2 1 34 34 H 0.97000 * 119.99808 * 341.33823 * 7 5 4 35 35 H 0.96998 * 120.00013 * 180.02562 * 11 10 8 36 36 H 1.08998 * 110.36803 * 204.15086 * 16 5 4 37 37 H 1.09004 * 110.45685 * 81.87310 * 16 5 4 38 38 H 1.08998 * 109.47243 * 299.99822 * 20 18 17 39 39 H 1.08994 * 109.47245 * 60.00184 * 20 18 17 40 40 H 1.08997 * 109.46288 * 264.13908 * 22 21 20 41 41 H 1.09006 * 109.46304 * 24.11774 * 22 21 20 42 42 H 1.08996 * 109.52392 * 166.60762 * 23 22 21 43 43 H 1.09002 * 109.51971 * 286.78562 * 23 22 21 44 44 H 0.96996 * 119.50369 * 184.41447 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0549 -0.7511 1.2417 5 6 2.3519 -2.1704 0.6896 6 1 1.4452 -2.7745 0.6568 7 7 3.3934 -2.8340 1.4777 8 6 3.5377 -4.1942 1.4144 9 1 2.8839 -4.7778 0.7832 10 6 4.5249 -4.8230 2.1607 11 7 4.6639 -6.1303 2.0995 12 14 5.6561 -3.8135 3.2519 13 1 5.0585 -3.6911 4.6058 14 1 6.9764 -4.4858 3.3525 15 1 5.8329 -2.4610 2.6648 16 6 2.8569 -1.8488 -0.7392 17 7 2.0300 -0.7124 -1.1848 18 6 1.7754 -0.3812 -2.4662 19 8 1.0793 0.5796 -2.7173 20 6 2.3557 -1.2047 -3.5869 21 7 1.9349 -0.6441 -4.8733 22 6 2.7603 0.3776 -5.5201 23 6 2.7205 0.1820 -7.0374 24 6 1.2913 -0.0215 -7.4735 25 8 0.9183 0.4024 -8.5464 26 7 0.4303 -0.6743 -6.6714 27 6 0.8003 -1.0786 -5.4454 28 8 0.0881 -1.8530 -4.8370 29 1 -0.3633 -1.0276 -0.0078 30 1 -0.3633 0.5206 -0.8861 31 1 -0.3634 0.5071 0.8939 32 1 2.9657 -0.2853 1.6179 33 1 1.2917 -0.7917 2.0190 34 1 3.9808 -2.3098 2.0444 35 1 5.3535 -6.5697 2.6213 36 1 2.7089 -2.7062 -1.3958 37 1 3.9094 -1.5663 -0.7167 38 1 3.4437 -1.1905 -3.5225 39 1 2.0003 -2.2318 -3.5049 40 1 2.3755 1.3665 -5.2712 41 1 3.7886 0.2892 -5.1696 42 1 3.1291 1.0647 -7.5293 43 1 3.3118 -0.6929 -7.3075 44 1 -0.4690 -0.8579 -6.9849 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989650517.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:42 Heat of formation + Delta-G solvation = -66.345488 kcal Electronic energy + Delta-G solvation = -28152.793902 eV Core-core repulsion = 24106.263441 eV Total energy + Delta-G solvation = -4046.530461 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.95138 -40.13442 -39.14302 -37.63355 -36.39350 -34.91050 -34.37459 -32.32625 -31.64256 -31.39756 -28.91145 -27.80205 -25.61181 -25.41674 -23.88604 -23.33638 -21.90443 -20.44335 -19.60964 -18.83569 -18.58144 -18.02415 -17.78570 -17.29582 -16.64943 -16.02538 -15.69946 -15.31219 -15.11108 -14.83351 -14.77821 -14.47741 -14.14149 -13.80074 -13.68818 -13.35146 -13.12871 -12.99904 -12.80155 -12.64844 -12.46468 -12.13871 -11.95433 -11.79089 -11.59558 -11.15368 -10.99118 -10.91157 -10.71203 -10.57419 -10.50081 -10.43295 -10.15020 -10.09757 -9.71758 -9.18831 -9.03234 -8.50040 -7.46667 -5.90282 -3.29080 1.41474 1.95392 2.61821 2.70227 2.91360 3.15613 3.26956 3.30439 3.37061 3.94877 4.10629 4.41388 4.46458 4.49457 4.59306 4.87819 4.93864 4.95893 4.97226 5.09025 5.18723 5.25317 5.28701 5.45846 5.49228 5.62090 5.70381 5.72458 5.76246 5.82589 5.97113 6.04593 6.10440 6.14930 6.28358 6.39164 6.51628 6.68003 7.03628 7.17839 7.63973 7.83654 7.86495 8.21662 8.28199 9.04556 9.76468 9.94208 11.27199 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.018458 B = 0.002925 C = 0.002736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.603313 B = 9569.571106 C =10230.364278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.141 3.859 3 H 0.070 0.930 4 C -0.140 4.140 5 C 0.179 3.821 6 H 0.074 0.926 7 N -0.736 5.736 8 C -0.255 4.255 9 H 0.093 0.907 10 C 0.010 3.990 11 N -0.928 5.928 12 Si 0.884 3.116 13 H -0.283 1.283 14 H -0.290 1.290 15 H -0.276 1.276 16 C 0.070 3.930 17 N -0.608 5.608 18 C 0.514 3.486 19 O -0.541 6.541 20 C 0.114 3.886 21 N -0.599 5.599 22 C 0.110 3.890 23 C -0.158 4.158 24 C 0.525 3.475 25 O -0.506 6.506 26 N -0.674 5.674 27 C 0.714 3.286 28 O -0.547 6.547 29 H 0.059 0.941 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.364 0.636 35 H 0.261 0.739 36 H 0.075 0.925 37 H 0.072 0.928 38 H 0.116 0.884 39 H 0.121 0.879 40 H 0.081 0.919 41 H 0.104 0.896 42 H 0.127 0.873 43 H 0.116 0.884 44 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.895 14.670 -13.845 20.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.038 3.962 3 H 0.088 0.912 4 C -0.179 4.179 5 C 0.067 3.933 6 H 0.092 0.908 7 N -0.378 5.378 8 C -0.384 4.384 9 H 0.111 0.889 10 C -0.186 4.186 11 N -0.574 5.574 12 Si 0.714 3.286 13 H -0.210 1.210 14 H -0.217 1.217 15 H -0.203 1.203 16 C -0.056 4.056 17 N -0.343 5.343 18 C 0.300 3.700 19 O -0.419 6.419 20 C -0.013 4.013 21 N -0.335 5.335 22 C -0.013 4.013 23 C -0.198 4.198 24 C 0.313 3.687 25 O -0.379 6.379 26 N -0.343 5.343 27 C 0.415 3.585 28 O -0.421 6.421 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.093 0.907 33 H 0.102 0.898 34 H 0.198 0.802 35 H 0.072 0.928 36 H 0.093 0.907 37 H 0.090 0.910 38 H 0.134 0.866 39 H 0.139 0.861 40 H 0.100 0.900 41 H 0.122 0.878 42 H 0.145 0.855 43 H 0.134 0.866 44 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -2.672 14.763 -14.270 20.706 hybrid contribution 0.635 0.475 0.707 1.063 sum -2.038 15.238 -13.562 20.501 Atomic orbital electron populations 1.22133 0.94856 1.02561 1.02405 1.21464 0.94569 0.95769 0.84414 0.91200 1.23025 1.01732 0.96863 0.96267 1.21240 0.92593 0.91110 0.88317 0.90803 1.42668 1.37699 1.05265 1.52185 1.19062 1.14619 0.81146 1.23596 0.88939 1.24689 0.98900 0.95350 0.99694 1.69696 1.35882 1.07339 1.44532 0.86573 0.81055 0.79609 0.81354 1.20953 1.21660 1.20256 1.23489 0.94807 0.87266 1.00009 1.48614 1.50375 1.30823 1.04456 1.20606 0.81183 0.85335 0.82826 1.90660 1.38785 1.29090 1.83363 1.21356 1.00963 0.98950 0.80015 1.46537 1.23414 1.42386 1.21176 1.21691 0.97107 0.92299 0.90221 1.22278 0.93124 1.07251 0.97131 1.20982 0.88506 0.75454 0.83804 1.90794 1.78830 1.46282 1.21995 1.44237 1.18317 1.56301 1.15415 1.15499 0.81616 0.80718 0.80652 1.91036 1.51800 1.36961 1.62262 0.92230 0.91486 0.92003 0.90749 0.89822 0.80220 0.92848 0.90668 0.91022 0.86623 0.86104 0.90027 0.87787 0.85491 0.86588 0.73236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.13 9.06 37.16 0.34 -1.79 16 2 C 0.14 1.87 3.49 -66.96 -0.23 1.64 16 3 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 4 C -0.14 -1.90 6.12 -24.90 -0.15 -2.05 16 5 C 0.18 2.99 3.68 -65.78 -0.24 2.75 16 6 H 0.07 1.32 8.13 -51.93 -0.42 0.90 16 7 N -0.74 -15.38 5.08 -51.35 -0.26 -15.64 16 8 C -0.25 -6.54 10.47 -15.06 -0.16 -6.70 16 9 H 0.09 2.56 8.06 -52.49 -0.42 2.14 16 10 C 0.01 0.28 5.50 -17.43 -0.10 0.19 16 11 N -0.93 -27.54 13.97 55.49 0.78 -26.76 16 12 Si 0.88 20.47 27.74 -169.99 -4.71 15.76 16 13 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 14 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 15 H -0.28 -5.90 6.52 56.52 0.37 -5.54 16 16 C 0.07 1.01 6.39 -2.52 -0.02 1.00 16 17 N -0.61 -8.34 3.08 -163.02 -0.50 -8.84 16 18 C 0.51 7.10 7.70 -10.99 -0.08 7.02 16 19 O -0.54 -8.96 15.33 5.56 0.09 -8.88 16 20 C 0.11 1.20 4.83 -5.19 -0.03 1.17 16 21 N -0.60 -5.98 2.28 -181.17 -0.41 -6.40 16 22 C 0.11 0.68 6.64 -4.07 -0.03 0.65 16 23 C -0.16 -0.81 6.28 -27.81 -0.17 -0.98 16 24 C 0.52 4.77 7.76 -11.03 -0.09 4.68 16 25 O -0.51 -6.13 17.93 5.59 0.10 -6.03 16 26 N -0.67 -6.72 5.18 -16.03 -0.08 -6.80 16 27 C 0.71 8.72 8.21 -87.78 -0.72 8.00 16 28 O -0.55 -8.78 16.65 5.33 0.09 -8.69 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.07 1.00 6.75 -51.93 -0.35 0.65 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.97 8.00 -51.93 -0.42 0.56 16 33 H 0.08 1.06 7.83 -51.92 -0.41 0.65 16 34 H 0.36 7.47 5.57 -40.82 -0.23 7.24 16 35 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 36 H 0.07 1.08 7.48 -51.93 -0.39 0.69 16 37 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.12 0.83 7.82 -51.93 -0.41 0.43 16 39 H 0.12 1.38 7.13 -51.93 -0.37 1.01 16 40 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.10 0.36 7.79 -51.93 -0.40 -0.04 16 42 H 0.13 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.12 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.43 3.90 8.86 -40.82 -0.36 3.53 16 LS Contribution 362.82 15.07 5.47 5.47 Total: -1.00 -35.30 362.82 -7.44 -42.74 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: -6.30 Total: 8.51 kcal Atomic # 6 Polarization: 17.25 SS G_CDS: -1.68 Total: 15.57 kcal Atomic # 7 Polarization: -63.96 SS G_CDS: -0.48 Total: -64.44 kcal Atomic # 8 Polarization: -23.87 SS G_CDS: 0.27 Total: -23.60 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -4.71 Total: 15.76 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -35.30 -7.44 -42.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989650517.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.608 kcal (2) G-P(sol) polarization free energy of solvation -35.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds