Wall clock time and date at job start Fri Apr 10 2020 18:31:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.87413 * 2 1 4 4 C 1.54321 * 109.88514 * 121.16953 * 2 1 3 5 5 C 1.55157 * 102.94331 * 97.22220 * 4 2 1 6 6 H 1.09000 * 111.00863 * 277.43010 * 5 4 2 7 7 N 1.46503 * 111.03871 * 153.59291 * 5 4 2 8 8 C 1.36932 * 120.00121 * 161.33157 * 7 5 4 9 9 H 1.07999 * 120.00029 * 0.02562 * 8 7 5 10 10 C 1.38811 * 120.00306 * 179.97438 * 8 7 5 11 11 N 1.31616 * 120.00486 * 180.02562 * 10 8 7 12 12 Si 1.86803 * 119.99763 * 0.02562 * 10 8 7 13 13 H 1.48495 * 109.47346 * 89.99444 * 12 10 8 14 14 H 1.48499 * 109.47040 * 209.99841 * 12 10 8 15 15 H 1.48501 * 109.47023 * 329.99519 * 12 10 8 16 16 C 1.54915 * 101.57970 * 35.50676 * 5 4 2 17 17 N 1.47014 * 109.88588 * 238.98085 * 2 1 3 18 18 C 1.34778 * 125.65105 * 59.55700 * 17 2 1 19 19 O 1.21280 * 119.99826 * 0.02562 * 18 17 2 20 20 C 1.50698 * 120.00118 * 180.02562 * 18 17 2 21 21 N 1.46500 * 109.46857 * 179.97438 * 20 18 17 22 22 C 1.46411 * 119.53752 * 90.00004 * 21 20 18 23 23 C 1.53038 * 109.52299 * 144.12017 * 22 21 20 24 24 C 1.50804 * 109.18275 * 46.69694 * 23 22 21 25 25 O 1.21239 * 120.01614 * 145.79233 * 24 23 22 26 26 N 1.34563 * 119.96708 * 325.76684 * 24 23 22 27 27 C 1.34287 * 119.53838 * 269.72137 * 21 20 18 28 28 O 1.21537 * 119.20753 * 5.71971 * 27 21 20 29 29 H 1.09002 * 109.47153 * 179.56545 * 1 2 3 30 30 H 1.09001 * 109.46832 * 59.56735 * 1 2 3 31 31 H 1.09004 * 109.47261 * 299.56717 * 1 2 3 32 32 H 1.08998 * 110.73022 * 215.59048 * 4 2 1 33 33 H 1.09008 * 110.71652 * 338.86563 * 4 2 1 34 34 H 0.97000 * 119.99808 * 341.33823 * 7 5 4 35 35 H 0.96998 * 120.00013 * 180.02562 * 11 10 8 36 36 H 1.08998 * 110.36803 * 204.15086 * 16 5 4 37 37 H 1.09004 * 110.45685 * 81.87310 * 16 5 4 38 38 H 1.08998 * 109.47243 * 299.99822 * 20 18 17 39 39 H 1.08994 * 109.47245 * 60.00184 * 20 18 17 40 40 H 1.08997 * 109.46288 * 264.13908 * 22 21 20 41 41 H 1.09006 * 109.46304 * 24.11774 * 22 21 20 42 42 H 1.08996 * 109.52392 * 166.60762 * 23 22 21 43 43 H 1.09002 * 109.51971 * 286.78562 * 23 22 21 44 44 H 0.96996 * 119.50369 * 184.41447 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0549 -0.7511 1.2417 5 6 2.3519 -2.1704 0.6896 6 1 1.4452 -2.7745 0.6568 7 7 3.3934 -2.8340 1.4777 8 6 3.5377 -4.1942 1.4144 9 1 2.8839 -4.7778 0.7832 10 6 4.5249 -4.8230 2.1607 11 7 4.6639 -6.1303 2.0995 12 14 5.6561 -3.8135 3.2519 13 1 5.0585 -3.6911 4.6058 14 1 6.9764 -4.4858 3.3525 15 1 5.8329 -2.4610 2.6648 16 6 2.8569 -1.8488 -0.7392 17 7 2.0300 -0.7124 -1.1848 18 6 1.7754 -0.3812 -2.4662 19 8 1.0793 0.5796 -2.7173 20 6 2.3557 -1.2047 -3.5869 21 7 1.9349 -0.6441 -4.8733 22 6 2.7603 0.3776 -5.5201 23 6 2.7205 0.1820 -7.0374 24 6 1.2913 -0.0215 -7.4735 25 8 0.9183 0.4024 -8.5464 26 7 0.4303 -0.6743 -6.6714 27 6 0.8003 -1.0786 -5.4454 28 8 0.0881 -1.8530 -4.8370 29 1 -0.3633 -1.0276 -0.0078 30 1 -0.3633 0.5206 -0.8861 31 1 -0.3634 0.5071 0.8939 32 1 2.9657 -0.2853 1.6179 33 1 1.2917 -0.7917 2.0190 34 1 3.9808 -2.3098 2.0444 35 1 5.3535 -6.5697 2.6213 36 1 2.7089 -2.7062 -1.3958 37 1 3.9094 -1.5663 -0.7167 38 1 3.4437 -1.1905 -3.5225 39 1 2.0003 -2.2318 -3.5049 40 1 2.3755 1.3665 -5.2712 41 1 3.7886 0.2892 -5.1696 42 1 3.1291 1.0647 -7.5293 43 1 3.3118 -0.6929 -7.3075 44 1 -0.4690 -0.8579 -6.9849 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989650517.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:39 Heat of formation + Delta-G solvation = -93.406677 kcal Electronic energy + Delta-G solvation = -28153.967363 eV Core-core repulsion = 24106.263441 eV Total energy + Delta-G solvation = -4047.703922 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -42.76991 -41.22156 -40.05977 -38.81718 -37.26294 -36.06379 -35.74168 -33.52979 -33.17254 -32.24393 -30.39213 -28.70439 -26.75184 -26.03086 -25.52923 -24.30850 -23.07696 -21.76883 -20.55389 -19.77615 -19.60771 -19.38801 -18.80521 -18.31598 -17.57741 -17.16717 -16.74603 -16.45372 -16.15176 -15.84747 -15.63418 -15.62058 -15.38785 -15.10066 -14.69718 -14.55409 -14.39730 -14.11753 -13.96447 -13.61028 -13.37975 -13.29294 -13.12067 -12.94231 -12.82695 -12.56758 -12.31398 -12.02496 -11.92046 -11.90270 -11.77111 -11.45063 -11.41278 -11.40304 -11.19091 -10.94841 -9.97247 -9.67369 -9.29919 -7.97282 -5.33298 0.62960 1.14830 1.44853 1.48620 1.55514 1.58096 1.85722 2.11344 2.19889 2.54065 3.29557 3.32853 3.37851 3.61168 3.73269 3.82232 3.89465 3.93820 4.08020 4.12816 4.33559 4.37550 4.41927 4.44722 4.48472 4.55545 4.69399 4.80707 4.83878 4.91666 4.92687 5.00470 5.05303 5.14185 5.24848 5.33995 5.40313 5.48410 5.82479 6.25320 6.25711 6.40334 6.53425 6.98004 7.11043 7.14696 7.84842 8.04887 9.23621 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.018458 B = 0.002925 C = 0.002736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.603313 B = 9569.571106 C =10230.364278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.140 3.860 3 H 0.082 0.918 4 C -0.126 4.126 5 C 0.167 3.833 6 H 0.055 0.945 7 N -0.736 5.736 8 C -0.231 4.231 9 H 0.059 0.941 10 C -0.061 4.061 11 N -0.983 5.983 12 Si 0.953 3.047 13 H -0.283 1.283 14 H -0.302 1.302 15 H -0.241 1.241 16 C 0.083 3.917 17 N -0.608 5.608 18 C 0.510 3.490 19 O -0.571 6.571 20 C 0.114 3.886 21 N -0.594 5.594 22 C 0.105 3.895 23 C -0.145 4.145 24 C 0.523 3.477 25 O -0.540 6.540 26 N -0.674 5.674 27 C 0.711 3.289 28 O -0.596 6.596 29 H 0.045 0.955 30 H 0.046 0.954 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.371 0.629 35 H 0.257 0.743 36 H 0.072 0.928 37 H 0.084 0.916 38 H 0.159 0.841 39 H 0.109 0.891 40 H 0.074 0.926 41 H 0.143 0.857 42 H 0.153 0.847 43 H 0.141 0.859 44 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.173 17.353 -13.848 22.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.037 3.963 3 H 0.100 0.900 4 C -0.165 4.165 5 C 0.057 3.943 6 H 0.073 0.927 7 N -0.379 5.379 8 C -0.362 4.362 9 H 0.077 0.923 10 C -0.252 4.252 11 N -0.633 5.633 12 Si 0.781 3.219 13 H -0.210 1.210 14 H -0.229 1.229 15 H -0.165 1.165 16 C -0.042 4.042 17 N -0.342 5.342 18 C 0.298 3.702 19 O -0.450 6.450 20 C -0.012 4.012 21 N -0.330 5.330 22 C -0.016 4.016 23 C -0.185 4.185 24 C 0.313 3.687 25 O -0.415 6.415 26 N -0.341 5.341 27 C 0.413 3.587 28 O -0.474 6.474 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.103 0.897 32 H 0.108 0.892 33 H 0.112 0.888 34 H 0.205 0.795 35 H 0.066 0.934 36 H 0.091 0.909 37 H 0.102 0.898 38 H 0.176 0.824 39 H 0.127 0.873 40 H 0.093 0.907 41 H 0.161 0.839 42 H 0.171 0.829 43 H 0.159 0.841 44 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -0.603 17.536 -14.309 22.641 hybrid contribution -0.159 -0.341 0.638 0.741 sum -0.762 17.196 -13.670 21.981 Atomic orbital electron populations 1.22074 0.95061 1.01657 1.02532 1.21538 0.94390 0.96295 0.84112 0.90003 1.22951 1.02770 0.94216 0.96521 1.21373 0.90865 0.92462 0.89573 0.92724 1.42549 1.38783 1.03481 1.53118 1.18982 1.12749 0.83152 1.21348 0.92342 1.25494 1.01294 0.96356 1.02076 1.69887 1.37248 1.09647 1.46553 0.85443 0.77916 0.79421 0.79145 1.20969 1.22872 1.16543 1.23182 0.95288 0.87590 0.98179 1.48633 1.50261 1.30438 1.04844 1.21190 0.80568 0.85135 0.83274 1.90651 1.40039 1.30634 1.83722 1.21479 1.03078 0.97540 0.79117 1.46693 1.22891 1.42546 1.20824 1.22020 0.98347 0.90680 0.90563 1.22384 0.90177 1.09515 0.96404 1.21796 0.89814 0.74090 0.82980 1.90784 1.79658 1.47626 1.23391 1.44271 1.18708 1.56131 1.15022 1.15725 0.81834 0.80304 0.80870 1.91000 1.53542 1.39265 1.63543 0.93567 0.93506 0.89744 0.89223 0.88807 0.79490 0.93411 0.90926 0.89804 0.82378 0.87278 0.90749 0.83889 0.82941 0.84147 0.73416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.90 9.06 71.98 0.65 -3.25 16 2 C 0.14 3.38 3.49 45.34 0.16 3.54 16 3 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 4 C -0.13 -3.05 6.12 31.78 0.19 -2.85 16 5 C 0.17 5.32 3.68 46.38 0.17 5.50 16 6 H 0.05 1.96 8.13 -2.39 -0.02 1.94 16 7 N -0.74 -29.41 5.08 -316.37 -1.61 -31.02 16 8 C -0.23 -11.90 10.47 84.03 0.88 -11.02 16 9 H 0.06 3.35 8.06 -2.91 -0.02 3.33 16 10 C -0.06 -3.30 5.50 84.86 0.47 -2.84 16 11 N -0.98 -59.83 13.97 21.65 0.30 -59.53 16 12 Si 0.95 41.49 27.74 68.60 1.90 43.39 16 13 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 14 H -0.30 -13.63 7.11 99.48 0.71 -12.92 16 15 H -0.24 -8.99 6.52 99.48 0.65 -8.34 16 16 C 0.08 2.24 6.39 86.86 0.55 2.79 16 17 N -0.61 -15.48 3.08 -788.06 -2.43 -17.91 16 18 C 0.51 13.29 7.70 87.66 0.67 13.97 16 19 O -0.57 -18.33 15.33 -3.03 -0.05 -18.38 16 20 C 0.11 2.17 4.83 85.63 0.41 2.59 16 21 N -0.59 -10.77 2.28 -845.67 -1.93 -12.70 16 22 C 0.10 0.93 6.64 86.41 0.57 1.51 16 23 C -0.15 -1.01 6.28 29.89 0.19 -0.82 16 24 C 0.52 8.88 7.76 87.72 0.68 9.56 16 25 O -0.54 -12.73 17.93 -2.90 -0.05 -12.78 16 26 N -0.67 -13.41 5.18 -441.70 -2.29 -15.70 16 27 C 0.71 17.23 8.21 179.36 1.47 18.70 16 28 O -0.60 -19.78 16.65 -3.83 -0.06 -19.84 16 29 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.05 1.37 6.75 -2.39 -0.02 1.36 16 31 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 32 H 0.09 1.96 8.00 -2.39 -0.02 1.94 16 33 H 0.09 2.10 7.83 -2.38 -0.02 2.08 16 34 H 0.37 13.95 5.57 -92.71 -0.52 13.44 16 35 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 36 H 0.07 2.00 7.48 -2.39 -0.02 1.99 16 37 H 0.08 2.11 8.14 -2.38 -0.02 2.09 16 38 H 0.16 1.62 7.82 -2.39 -0.02 1.60 16 39 H 0.11 2.41 7.13 -2.39 -0.02 2.40 16 40 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.14 0.23 7.79 -2.38 -0.02 0.21 16 42 H 0.15 0.38 8.14 -2.39 -0.02 0.36 16 43 H 0.14 0.40 8.14 -2.39 -0.02 0.38 16 44 H 0.42 8.17 8.86 -92.71 -0.82 7.35 16 Total: -1.00 -80.18 362.82 0.52 -79.66 By element: Atomic # 1 Polarization: 27.78 SS G_CDS: -0.35 Total: 27.43 kcal Atomic # 6 Polarization: 30.28 SS G_CDS: 7.08 Total: 37.36 kcal Atomic # 7 Polarization: -128.90 SS G_CDS: -7.95 Total: -136.85 kcal Atomic # 8 Polarization: -50.83 SS G_CDS: -0.16 Total: -50.99 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 1.90 Total: 43.39 kcal Total: -80.18 0.52 -79.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989650517.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.748 kcal (2) G-P(sol) polarization free energy of solvation -80.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds