Wall clock time and date at job start Fri Apr 10 2020 18:31:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 110.32878 * 2 1 4 4 C 1.54909 * 110.36648 * 237.64900 * 2 1 3 5 5 C 1.55157 * 101.58209 * 204.15152 * 4 2 1 6 6 H 1.08998 * 110.72348 * 276.95815 * 5 4 2 7 7 N 1.46503 * 110.71966 * 153.86067 * 5 4 2 8 8 C 1.36940 * 119.99507 * 154.99828 * 7 5 4 9 9 H 1.07995 * 120.00415 * 0.02562 * 8 7 5 10 10 C 1.38812 * 119.99573 * 180.02562 * 8 7 5 11 11 N 1.31620 * 120.00483 * 0.02562 * 10 8 7 12 12 Si 1.86796 * 120.00023 * 180.02562 * 10 8 7 13 13 H 1.48503 * 109.47406 * 89.99916 * 12 10 8 14 14 H 1.48503 * 109.47363 * 209.99784 * 12 10 8 15 15 H 1.48501 * 109.46926 * 329.99896 * 12 10 8 16 16 C 1.54334 * 103.02020 * 35.30633 * 5 4 2 17 17 N 1.47032 * 107.26481 * 338.14098 * 16 5 4 18 18 C 1.34770 * 125.64728 * 178.85170 * 17 16 5 19 19 O 1.21279 * 120.00448 * 179.69123 * 18 17 16 20 20 C 1.50710 * 120.00240 * 359.68861 * 18 17 16 21 21 N 1.46495 * 109.47169 * 180.02562 * 20 18 17 22 22 C 1.46415 * 119.53416 * 270.02088 * 21 20 18 23 23 C 1.53047 * 109.51611 * 144.12480 * 22 21 20 24 24 C 1.50809 * 109.18469 * 46.69562 * 23 22 21 25 25 O 1.21229 * 120.01258 * 145.78666 * 24 23 22 26 26 N 1.34457 * 119.92301 * 325.50421 * 24 23 22 27 27 C 1.34289 * 119.53662 * 90.00112 * 21 20 18 28 28 O 1.21543 * 119.20746 * 5.70972 * 27 21 20 29 29 H 1.09002 * 109.46828 * 299.21753 * 1 2 3 30 30 H 1.09000 * 109.47314 * 59.21624 * 1 2 3 31 31 H 1.08998 * 109.47267 * 179.21606 * 1 2 3 32 32 H 1.09004 * 111.00608 * 322.22550 * 4 2 1 33 33 H 1.08996 * 111.00472 * 86.03934 * 4 2 1 34 34 H 0.96993 * 120.00127 * 335.00435 * 7 5 4 35 35 H 0.96993 * 120.00446 * 179.97438 * 11 10 8 36 36 H 1.08997 * 109.99557 * 218.66552 * 16 5 4 37 37 H 1.09003 * 109.77755 * 97.49271 * 16 5 4 38 38 H 1.09002 * 109.46923 * 59.99978 * 20 18 17 39 39 H 1.09003 * 109.47047 * 300.00420 * 20 18 17 40 40 H 1.08997 * 109.46173 * 264.13709 * 22 21 20 41 41 H 1.08995 * 109.45973 * 24.11082 * 22 21 20 42 42 H 1.09002 * 109.51216 * 166.60820 * 23 22 21 43 43 H 1.09002 * 109.51873 * 286.72436 * 23 22 21 44 44 H 0.96998 * 119.43895 * 184.70056 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 6 2.0691 -0.7771 -1.2268 5 6 3.4778 -1.2005 -0.7330 6 1 4.1952 -0.3922 -0.8747 7 7 3.9249 -2.4144 -1.4206 8 6 5.2630 -2.6779 -1.5439 9 1 5.9887 -1.9911 -1.1338 10 6 5.6867 -3.8278 -2.1958 11 7 4.8024 -4.6646 -2.6960 12 14 7.5120 -4.1877 -2.3634 13 1 7.9696 -4.9808 -1.1942 14 1 7.7522 -4.9592 -3.6094 15 1 8.2655 -2.9093 -2.4198 16 6 3.2525 -1.4717 0.7695 17 7 2.0430 -0.7372 1.1690 18 6 1.4972 -0.7338 2.4012 19 8 0.4967 -0.0841 2.6196 20 6 2.1301 -1.5375 3.5080 21 7 1.3540 -1.3692 4.7390 22 6 1.6909 -0.2835 5.6618 23 6 0.4094 0.2712 6.2882 24 6 -0.4514 -0.8761 6.7540 25 8 -1.1301 -0.7589 7.7516 26 7 -0.4693 -2.0266 6.0585 27 6 0.3434 -2.2125 5.0050 28 8 0.1565 -3.1641 4.2723 29 1 -0.3633 0.5016 0.8970 30 1 -0.3634 0.5260 -0.8829 31 1 -0.3634 -1.0275 -0.0141 32 1 1.4510 -1.6495 -1.4392 33 1 2.1392 -0.1286 -2.1001 34 1 3.2732 -3.0313 -1.7886 35 1 5.0985 -5.4678 -3.1519 36 1 4.1080 -1.1176 1.3446 37 1 3.1089 -2.5396 0.9341 38 1 3.1505 -1.1907 3.6710 39 1 2.1447 -2.5912 3.2292 40 1 2.3439 -0.6639 6.4472 41 1 2.2022 0.5103 5.1173 42 1 0.6641 0.9041 7.1383 43 1 -0.1338 0.8578 5.5473 44 1 -1.0762 -2.7350 6.3244 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989650519.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:50 Heat of formation + Delta-G solvation = -93.881327 kcal Electronic energy + Delta-G solvation = -28227.414896 eV Core-core repulsion = 24179.690392 eV Total energy + Delta-G solvation = -4047.724504 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.77357 -41.19254 -40.05470 -38.71388 -37.23726 -35.94418 -35.73611 -33.35705 -33.09546 -32.21949 -30.07742 -28.66218 -26.60093 -26.03242 -25.76229 -24.32887 -22.98334 -21.74371 -20.50814 -19.73244 -19.40831 -19.19733 -18.72876 -18.16385 -17.63117 -17.31463 -16.85378 -16.49328 -15.95741 -15.79913 -15.71564 -15.53868 -15.34769 -15.22223 -14.67602 -14.46684 -14.28381 -14.12500 -13.71326 -13.44434 -13.27530 -13.12954 -12.95429 -12.85993 -12.78883 -12.60493 -12.31960 -12.13963 -12.07151 -11.88468 -11.67688 -11.50758 -11.42462 -11.40440 -11.01911 -10.83868 -9.91113 -9.57905 -9.02894 -7.90730 -5.20847 0.60647 1.19094 1.53863 1.54117 1.59077 1.62491 1.89938 1.99905 2.29165 2.60718 3.36464 3.40605 3.42152 3.61149 3.85389 3.91211 3.93071 3.99010 4.10743 4.22994 4.36843 4.38670 4.42516 4.52686 4.55183 4.57030 4.75424 4.82007 4.82859 4.91606 4.92197 5.03129 5.14974 5.20992 5.26697 5.36855 5.40188 5.55883 5.59594 6.25599 6.29689 6.39331 6.57665 6.98269 7.16058 7.37147 8.09982 8.32360 9.32504 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.018153 B = 0.002918 C = 0.002710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.104457 B = 9592.894610 C =10331.231864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.140 3.860 3 H 0.094 0.906 4 C -0.130 4.130 5 C 0.165 3.835 6 H 0.079 0.921 7 N -0.727 5.727 8 C -0.237 4.237 9 H 0.087 0.913 10 C -0.075 4.075 11 N -0.971 5.971 12 Si 0.970 3.030 13 H -0.288 1.288 14 H -0.304 1.304 15 H -0.265 1.265 16 C 0.082 3.918 17 N -0.607 5.607 18 C 0.509 3.491 19 O -0.565 6.565 20 C 0.113 3.887 21 N -0.594 5.594 22 C 0.107 3.893 23 C -0.150 4.150 24 C 0.527 3.473 25 O -0.538 6.538 26 N -0.672 5.672 27 C 0.712 3.288 28 O -0.598 6.598 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.031 0.969 32 H 0.057 0.943 33 H 0.094 0.906 34 H 0.373 0.627 35 H 0.249 0.751 36 H 0.089 0.911 37 H 0.053 0.947 38 H 0.158 0.842 39 H 0.105 0.895 40 H 0.107 0.893 41 H 0.126 0.874 42 H 0.156 0.844 43 H 0.117 0.883 44 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.072 14.209 16.739 22.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.037 3.963 3 H 0.112 0.888 4 C -0.169 4.169 5 C 0.055 3.945 6 H 0.097 0.903 7 N -0.366 5.366 8 C -0.369 4.369 9 H 0.105 0.895 10 C -0.267 4.267 11 N -0.621 5.621 12 Si 0.799 3.201 13 H -0.216 1.216 14 H -0.231 1.231 15 H -0.189 1.189 16 C -0.044 4.044 17 N -0.341 5.341 18 C 0.297 3.703 19 O -0.445 6.445 20 C -0.013 4.013 21 N -0.329 5.329 22 C -0.013 4.013 23 C -0.189 4.189 24 C 0.318 3.682 25 O -0.413 6.413 26 N -0.340 5.340 27 C 0.413 3.587 28 O -0.476 6.476 29 H 0.089 0.911 30 H 0.096 0.904 31 H 0.050 0.950 32 H 0.076 0.924 33 H 0.113 0.887 34 H 0.205 0.795 35 H 0.058 0.942 36 H 0.107 0.893 37 H 0.071 0.929 38 H 0.175 0.825 39 H 0.123 0.877 40 H 0.125 0.875 41 H 0.144 0.856 42 H 0.174 0.826 43 H 0.135 0.865 44 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -4.728 14.311 17.026 22.739 hybrid contribution -0.001 -1.569 -0.566 1.668 sum -4.730 12.742 16.460 21.346 Atomic orbital electron populations 1.22054 0.94475 1.01234 1.03374 1.21922 0.94584 0.95927 0.83860 0.88775 1.23097 0.96215 1.00070 0.97505 1.21388 0.94529 0.89280 0.89283 0.90256 1.42579 1.04276 1.23586 1.66123 1.19691 0.84698 1.03861 1.28647 0.89472 1.25554 1.01388 0.97974 1.01801 1.69820 1.34057 1.13983 1.44286 0.85194 0.80590 0.77964 0.76315 1.21572 1.23105 1.18923 1.23053 0.86178 0.95853 0.99281 1.48643 1.28379 1.48090 1.08971 1.21118 0.84125 0.81903 0.83132 1.90596 1.26108 1.45386 1.82400 1.21439 0.96436 1.02084 0.81385 1.46734 1.31942 1.31588 1.22678 1.22038 0.96403 0.89699 0.93201 1.22334 0.95821 0.95403 1.05391 1.21602 0.81497 0.83850 0.81271 1.90775 1.43310 1.81945 1.25273 1.44235 1.39414 1.19920 1.30387 1.15746 0.79896 0.82629 0.80396 1.91006 1.73747 1.33209 1.49608 0.91072 0.90362 0.94995 0.92412 0.88702 0.79514 0.94212 0.89297 0.92869 0.82497 0.87693 0.87451 0.85574 0.82649 0.86538 0.73365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.05 8.71 71.98 0.63 -3.42 16 2 C 0.14 3.54 3.76 45.47 0.17 3.72 16 3 H 0.09 2.05 8.14 -2.38 -0.02 2.03 16 4 C -0.13 -3.71 6.13 31.99 0.20 -3.52 16 5 C 0.17 5.42 3.61 46.18 0.17 5.58 16 6 H 0.08 2.46 8.09 -2.39 -0.02 2.44 16 7 N -0.73 -32.69 5.15 -317.31 -1.64 -34.32 16 8 C -0.24 -11.80 9.96 84.03 0.84 -10.96 16 9 H 0.09 4.01 7.83 -2.91 -0.02 3.99 16 10 C -0.07 -4.02 5.50 84.86 0.47 -3.55 16 11 N -0.97 -57.05 13.06 21.65 0.28 -56.77 16 12 Si 0.97 43.26 29.55 68.60 2.03 45.28 16 13 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 14 H -0.30 -14.06 7.11 99.48 0.71 -13.36 16 15 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 16 C 0.08 2.31 6.25 86.73 0.54 2.85 16 17 N -0.61 -15.90 3.24 -788.12 -2.55 -18.45 16 18 C 0.51 13.14 7.70 87.66 0.67 13.82 16 19 O -0.56 -17.01 14.09 -3.03 -0.04 -17.06 16 20 C 0.11 2.23 5.03 85.64 0.43 2.66 16 21 N -0.59 -10.99 2.28 -845.57 -1.93 -12.92 16 22 C 0.11 0.94 6.59 86.41 0.57 1.51 16 23 C -0.15 -1.54 6.28 29.90 0.19 -1.35 16 24 C 0.53 9.73 7.76 87.74 0.68 10.41 16 25 O -0.54 -13.17 17.93 -2.87 -0.05 -13.22 16 26 N -0.67 -13.88 5.17 -441.77 -2.28 -16.16 16 27 C 0.71 17.71 8.22 179.34 1.47 19.18 16 28 O -0.60 -20.31 16.57 -3.85 -0.06 -20.37 16 29 H 0.07 2.06 5.89 -2.39 -0.01 2.05 16 30 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.06 1.88 7.92 -2.39 -0.02 1.86 16 33 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 34 H 0.37 18.80 7.76 -92.71 -0.72 18.08 16 35 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 36 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 37 H 0.05 1.77 8.03 -2.39 -0.02 1.75 16 38 H 0.16 1.73 8.06 -2.39 -0.02 1.71 16 39 H 0.11 2.55 7.27 -2.39 -0.02 2.54 16 40 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 41 H 0.13 0.61 8.01 -2.39 -0.02 0.59 16 42 H 0.16 0.67 8.14 -2.39 -0.02 0.65 16 43 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 44 H 0.43 8.28 8.86 -92.71 -0.82 7.46 16 Total: -1.00 -75.34 365.02 0.28 -75.06 By element: Atomic # 1 Polarization: 32.49 SS G_CDS: -0.50 Total: 32.00 kcal Atomic # 6 Polarization: 29.90 SS G_CDS: 7.02 Total: 36.93 kcal Atomic # 7 Polarization: -130.50 SS G_CDS: -8.12 Total: -138.62 kcal Atomic # 8 Polarization: -50.49 SS G_CDS: -0.16 Total: -50.65 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.28 kcal Total: -75.34 0.28 -75.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989650519.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.818 kcal (2) G-P(sol) polarization free energy of solvation -75.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds