Wall clock time and date at job start Fri Apr 10 2020 18:31:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.99601 * 2 1 4 4 C 1.54327 * 109.98984 * 238.95900 * 2 1 3 5 5 C 1.55156 * 103.02221 * 218.66587 * 4 2 1 6 6 H 1.09003 * 111.04375 * 153.39206 * 5 4 2 7 7 N 1.46497 * 111.00524 * 277.23481 * 5 4 2 8 8 C 1.36942 * 120.00097 * 198.64671 * 7 5 4 9 9 H 1.07994 * 119.99932 * 359.97438 * 8 7 5 10 10 C 1.38804 * 119.99866 * 180.02562 * 8 7 5 11 11 N 1.31618 * 120.00377 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 119.99881 * 180.02562 * 10 8 7 13 13 H 1.48494 * 109.47042 * 359.97438 * 12 10 8 14 14 H 1.48504 * 109.47166 * 119.99873 * 12 10 8 15 15 H 1.48498 * 109.47076 * 239.99514 * 12 10 8 16 16 C 1.54918 * 101.58012 * 35.30827 * 5 4 2 17 17 N 1.47022 * 109.88107 * 121.09522 * 2 1 3 18 18 C 1.34780 * 125.64445 * 298.39549 * 17 2 1 19 19 O 1.21280 * 120.00423 * 359.71250 * 18 17 2 20 20 C 1.50701 * 119.99795 * 179.71926 * 18 17 2 21 21 N 1.46499 * 109.46992 * 179.97438 * 20 18 17 22 22 C 1.47310 * 126.68882 * 89.99924 * 21 20 18 23 23 C 1.51584 * 103.59590 * 179.97438 * 22 21 20 24 24 O 1.21234 * 127.15847 * 179.97438 * 23 22 21 25 25 N 1.34765 * 105.68352 * 0.02562 * 23 22 21 26 26 C 1.46506 * 124.17962 * 180.02562 * 25 23 22 27 27 C 1.33797 * 111.64264 * 359.76561 * 25 23 22 28 28 O 1.21538 * 123.76911 * 180.25073 * 27 25 23 29 29 H 1.09000 * 109.47448 * 300.36559 * 1 2 3 30 30 H 1.09006 * 109.47364 * 60.36346 * 1 2 3 31 31 H 1.09001 * 109.47307 * 180.35888 * 1 2 3 32 32 H 1.09000 * 110.85610 * 100.20042 * 4 2 1 33 33 H 1.09000 * 110.51966 * 336.97837 * 4 2 1 34 34 H 0.97000 * 120.00217 * 18.65021 * 7 5 4 35 35 H 0.96999 * 120.00216 * 180.02562 * 11 10 8 36 36 H 1.09003 * 110.36670 * 204.15269 * 16 5 4 37 37 H 1.08999 * 110.36757 * 81.82932 * 16 5 4 38 38 H 1.09002 * 109.47060 * 299.99722 * 20 18 17 39 39 H 1.09001 * 109.47380 * 59.99809 * 20 18 17 40 40 H 1.09003 * 110.60310 * 298.49354 * 22 21 20 41 41 H 1.09007 * 110.59961 * 61.28077 * 22 21 20 42 42 H 1.08994 * 109.46497 * 359.97438 * 26 25 23 43 43 H 1.09000 * 109.46948 * 119.97618 * 26 25 23 44 44 H 1.09002 * 109.47079 * 239.97464 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0576 -0.7478 -1.2426 5 6 3.2863 -1.5184 -0.6914 6 1 3.4813 -2.4157 -1.2787 7 7 4.4698 -0.6563 -0.6463 8 6 5.7188 -1.2117 -0.5632 9 1 5.8312 -2.2852 -0.5304 10 6 6.8401 -0.3947 -0.5199 11 7 6.7031 0.9137 -0.5593 12 14 8.5439 -1.1524 -0.4072 13 1 8.4265 -2.6324 -0.3783 14 1 9.3472 -0.7420 -1.5869 15 1 9.2124 -0.6850 0.8337 16 6 2.8098 -1.8825 0.7370 17 7 2.0300 -0.7141 1.1839 18 6 1.8073 -0.3619 2.4657 19 8 1.1474 0.6239 2.7180 20 6 2.3783 -1.1932 3.5856 21 7 1.9981 -0.6057 4.8726 22 6 0.7892 -0.9114 5.6569 23 6 0.9212 -0.0212 6.8767 24 8 0.1486 0.0656 7.8069 25 7 2.0755 0.6544 6.7114 26 6 2.5988 1.6354 7.6654 27 6 2.6872 0.3146 5.5710 28 8 3.7459 0.7866 5.2057 29 1 -0.3634 0.5195 0.8867 30 1 -0.3634 0.5082 -0.8933 31 1 -0.3634 -1.0276 0.0064 32 1 2.3597 -0.0452 -2.0192 33 1 1.3053 -1.4407 -1.6196 34 1 4.3689 0.3080 -0.6753 35 1 7.4868 1.4846 -0.5295 36 1 3.6655 -2.0412 1.3934 37 1 2.1800 -2.7718 0.7117 38 1 1.9877 -2.2087 3.5198 39 1 3.4650 -1.2158 3.5037 40 1 -0.1083 -0.6579 5.0927 41 1 0.7750 -1.9624 5.9457 42 1 1.9137 1.7233 8.5085 43 1 3.5754 1.3090 8.0232 44 1 2.6968 2.6035 7.1742 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989675575.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:56 Heat of formation + Delta-G solvation = -43.444895 kcal Electronic energy + Delta-G solvation = -28507.590740 eV Core-core repulsion = 24462.053323 eV Total energy + Delta-G solvation = -4045.537417 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -42.39208 -39.92584 -38.71474 -37.47987 -36.14646 -35.22173 -34.00558 -32.01927 -31.35257 -30.05537 -28.47646 -27.29590 -26.62140 -25.53962 -23.79872 -22.89830 -21.96829 -20.54092 -19.96945 -18.79952 -17.69113 -17.46404 -17.24493 -16.84308 -16.63284 -15.98884 -15.69295 -15.26226 -14.73926 -14.57492 -14.33106 -14.21572 -14.00571 -13.88802 -13.61322 -13.31377 -13.05483 -12.90642 -12.77530 -12.76539 -12.26786 -12.25378 -11.82809 -11.71568 -11.19799 -11.01520 -10.99156 -10.82099 -10.67484 -10.35919 -10.34611 -10.02404 -10.01045 -9.92745 -9.75779 -9.10648 -8.93091 -8.30668 -7.06659 -5.84038 -3.15308 1.47246 1.87378 2.69785 2.82890 2.92986 3.37929 3.39740 3.44116 3.48019 3.86063 4.48981 4.51370 4.60372 4.80606 4.92702 5.00462 5.06958 5.11842 5.16006 5.25061 5.27636 5.36958 5.45181 5.46724 5.55194 5.61601 5.68146 5.74550 5.82057 5.92074 6.10955 6.16057 6.19754 6.34421 6.37700 6.53073 6.64198 6.73879 6.98068 7.16867 7.62184 7.83351 8.00953 8.32746 8.39159 9.44785 9.99602 10.33381 11.37794 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.012162 B = 0.003909 C = 0.003187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2301.749256 B = 7161.010962 C = 8783.605561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.139 3.861 3 H 0.073 0.927 4 C -0.137 4.137 5 C 0.170 3.830 6 H 0.071 0.929 7 N -0.712 5.712 8 C -0.251 4.251 9 H 0.073 0.927 10 C -0.006 4.006 11 N -0.925 5.925 12 Si 0.906 3.094 13 H -0.279 1.279 14 H -0.291 1.291 15 H -0.291 1.291 16 C 0.064 3.936 17 N -0.594 5.594 18 C 0.511 3.489 19 O -0.544 6.544 20 C 0.138 3.862 21 N -0.609 5.609 22 C 0.066 3.934 23 C 0.527 3.473 24 O -0.479 6.479 25 N -0.578 5.578 26 C 0.089 3.911 27 C 0.702 3.298 28 O -0.526 6.526 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.052 0.948 32 H 0.084 0.916 33 H 0.074 0.926 34 H 0.386 0.614 35 H 0.256 0.744 36 H 0.081 0.919 37 H 0.058 0.942 38 H 0.115 0.885 39 H 0.125 0.875 40 H 0.124 0.876 41 H 0.123 0.877 42 H 0.092 0.908 43 H 0.078 0.922 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.965 -6.896 9.531 18.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.036 3.964 3 H 0.092 0.908 4 C -0.176 4.176 5 C 0.057 3.943 6 H 0.089 0.911 7 N -0.352 5.352 8 C -0.382 4.382 9 H 0.091 0.909 10 C -0.203 4.203 11 N -0.572 5.572 12 Si 0.737 3.263 13 H -0.205 1.205 14 H -0.218 1.218 15 H -0.218 1.218 16 C -0.063 4.063 17 N -0.328 5.328 18 C 0.297 3.703 19 O -0.422 6.422 20 C 0.013 3.987 21 N -0.347 5.347 22 C -0.060 4.060 23 C 0.315 3.685 24 O -0.350 6.350 25 N -0.325 5.325 26 C -0.052 4.052 27 C 0.404 3.596 28 O -0.397 6.397 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.102 0.898 33 H 0.093 0.907 34 H 0.220 0.780 35 H 0.066 0.934 36 H 0.099 0.901 37 H 0.076 0.924 38 H 0.133 0.867 39 H 0.142 0.858 40 H 0.141 0.859 41 H 0.141 0.859 42 H 0.111 0.889 43 H 0.097 0.903 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -13.899 -6.118 9.983 18.174 hybrid contribution 1.002 0.037 0.050 1.004 sum -12.897 -6.081 10.033 17.435 Atomic orbital electron populations 1.22116 0.95393 1.01635 1.02442 1.21482 0.93460 0.96856 0.84646 0.90848 1.23035 0.98145 0.99996 0.96401 1.21313 0.87008 0.94467 0.91504 0.91077 1.42357 1.00230 1.05274 1.87367 1.19227 0.83324 0.91778 1.43886 0.90884 1.24774 0.97999 0.95301 1.02238 1.69670 1.28967 1.02161 1.56394 0.86150 0.84711 0.78147 0.77300 1.20452 1.21811 1.21778 1.23484 0.94448 0.86685 1.01635 1.48393 1.51561 1.28539 1.04296 1.20564 0.80870 0.85908 0.82946 1.90666 1.40861 1.27315 1.83336 1.21153 1.03262 0.96016 0.78236 1.46966 1.23011 1.43845 1.20851 1.22491 0.91321 1.01384 0.90816 1.20835 0.80157 0.80197 0.87306 1.90799 1.44802 1.65242 1.34174 1.46234 1.23255 1.40730 1.22249 1.21815 1.00489 0.91226 0.91642 1.15792 0.83864 0.80071 0.79901 1.91062 1.20935 1.56742 1.71009 0.91729 0.92024 0.92870 0.89769 0.90704 0.77992 0.93352 0.90078 0.92384 0.86670 0.85762 0.85858 0.85910 0.88907 0.90318 0.90284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.04 9.11 37.16 0.34 -1.70 16 2 C 0.14 2.14 3.45 -66.95 -0.23 1.91 16 3 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 4 C -0.14 -1.96 6.05 -24.90 -0.15 -2.11 16 5 C 0.17 2.88 3.69 -65.78 -0.24 2.64 16 6 H 0.07 1.16 8.13 -51.93 -0.42 0.74 16 7 N -0.71 -16.44 5.27 -51.35 -0.27 -16.71 16 8 C -0.25 -6.50 9.98 -15.06 -0.15 -6.65 16 9 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 10 C -0.01 -0.17 5.50 -17.43 -0.10 -0.26 16 11 N -0.93 -27.53 13.06 55.49 0.72 -26.81 16 12 Si 0.91 21.73 29.55 -169.99 -5.02 16.71 16 13 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 14 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 15 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 16 C 0.06 0.93 6.38 -2.53 -0.02 0.91 16 17 N -0.59 -9.29 3.06 -163.01 -0.50 -9.79 16 18 C 0.51 8.26 7.71 -10.98 -0.08 8.18 16 19 O -0.54 -10.44 15.48 5.56 0.09 -10.35 16 20 C 0.14 1.74 5.63 -5.19 -0.03 1.71 16 21 N -0.61 -7.76 2.51 -181.39 -0.45 -8.21 16 22 C 0.07 0.60 7.66 -4.32 -0.03 0.57 16 23 C 0.53 6.02 8.32 -10.56 -0.09 5.93 16 24 O -0.48 -6.31 17.51 5.60 0.10 -6.21 16 25 N -0.58 -7.30 3.01 -128.16 -0.39 -7.69 16 26 C 0.09 0.89 10.76 59.85 0.64 1.54 16 27 C 0.70 10.84 8.31 -88.02 -0.73 10.10 16 28 O -0.53 -10.44 17.34 5.33 0.09 -10.35 16 29 H 0.06 0.95 6.89 -51.93 -0.36 0.60 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.07 0.87 7.84 -51.93 -0.41 0.46 16 34 H 0.39 9.91 7.82 -40.82 -0.32 9.59 16 35 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 36 H 0.08 1.29 7.48 -51.93 -0.39 0.90 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.12 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.12 1.75 7.73 -51.93 -0.40 1.34 16 40 H 0.12 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.12 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.09 0.77 7.64 -51.93 -0.40 0.37 16 43 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 371.75 15.07 5.60 5.60 Total: -1.00 -36.05 371.75 -7.37 -43.42 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: -6.47 Total: 7.64 kcal Atomic # 6 Polarization: 23.63 SS G_CDS: -0.87 Total: 22.76 kcal Atomic # 7 Polarization: -68.32 SS G_CDS: -0.89 Total: -69.21 kcal Atomic # 8 Polarization: -27.19 SS G_CDS: 0.28 Total: -26.91 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -36.05 -7.37 -43.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989675575.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.028 kcal (2) G-P(sol) polarization free energy of solvation -36.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds