Wall clock time and date at job start Fri Apr 10 2020 18:31:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.99601 * 2 1 4 4 C 1.54327 * 109.98984 * 238.95900 * 2 1 3 5 5 C 1.55156 * 103.02221 * 218.66587 * 4 2 1 6 6 H 1.09003 * 111.04375 * 153.39206 * 5 4 2 7 7 N 1.46497 * 111.00524 * 277.23481 * 5 4 2 8 8 C 1.36942 * 120.00097 * 198.64671 * 7 5 4 9 9 H 1.07994 * 119.99932 * 359.97438 * 8 7 5 10 10 C 1.38804 * 119.99866 * 180.02562 * 8 7 5 11 11 N 1.31618 * 120.00377 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 119.99881 * 180.02562 * 10 8 7 13 13 H 1.48494 * 109.47042 * 359.97438 * 12 10 8 14 14 H 1.48504 * 109.47166 * 119.99873 * 12 10 8 15 15 H 1.48498 * 109.47076 * 239.99514 * 12 10 8 16 16 C 1.54918 * 101.58012 * 35.30827 * 5 4 2 17 17 N 1.47022 * 109.88107 * 121.09522 * 2 1 3 18 18 C 1.34780 * 125.64445 * 298.39549 * 17 2 1 19 19 O 1.21280 * 120.00423 * 359.71250 * 18 17 2 20 20 C 1.50701 * 119.99795 * 179.71926 * 18 17 2 21 21 N 1.46499 * 109.46992 * 179.97438 * 20 18 17 22 22 C 1.47310 * 126.68882 * 89.99924 * 21 20 18 23 23 C 1.51584 * 103.59590 * 179.97438 * 22 21 20 24 24 O 1.21234 * 127.15847 * 179.97438 * 23 22 21 25 25 N 1.34765 * 105.68352 * 0.02562 * 23 22 21 26 26 C 1.46506 * 124.17962 * 180.02562 * 25 23 22 27 27 C 1.33797 * 111.64264 * 359.76561 * 25 23 22 28 28 O 1.21538 * 123.76911 * 180.25073 * 27 25 23 29 29 H 1.09000 * 109.47448 * 300.36559 * 1 2 3 30 30 H 1.09006 * 109.47364 * 60.36346 * 1 2 3 31 31 H 1.09001 * 109.47307 * 180.35888 * 1 2 3 32 32 H 1.09000 * 110.85610 * 100.20042 * 4 2 1 33 33 H 1.09000 * 110.51966 * 336.97837 * 4 2 1 34 34 H 0.97000 * 120.00217 * 18.65021 * 7 5 4 35 35 H 0.96999 * 120.00216 * 180.02562 * 11 10 8 36 36 H 1.09003 * 110.36670 * 204.15269 * 16 5 4 37 37 H 1.08999 * 110.36757 * 81.82932 * 16 5 4 38 38 H 1.09002 * 109.47060 * 299.99722 * 20 18 17 39 39 H 1.09001 * 109.47380 * 59.99809 * 20 18 17 40 40 H 1.09003 * 110.60310 * 298.49354 * 22 21 20 41 41 H 1.09007 * 110.59961 * 61.28077 * 22 21 20 42 42 H 1.08994 * 109.46497 * 359.97438 * 26 25 23 43 43 H 1.09000 * 109.46948 * 119.97618 * 26 25 23 44 44 H 1.09002 * 109.47079 * 239.97464 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0576 -0.7478 -1.2426 5 6 3.2863 -1.5184 -0.6914 6 1 3.4813 -2.4157 -1.2787 7 7 4.4698 -0.6563 -0.6463 8 6 5.7188 -1.2117 -0.5632 9 1 5.8312 -2.2852 -0.5304 10 6 6.8401 -0.3947 -0.5199 11 7 6.7031 0.9137 -0.5593 12 14 8.5439 -1.1524 -0.4072 13 1 8.4265 -2.6324 -0.3783 14 1 9.3472 -0.7420 -1.5869 15 1 9.2124 -0.6850 0.8337 16 6 2.8098 -1.8825 0.7370 17 7 2.0300 -0.7141 1.1839 18 6 1.8073 -0.3619 2.4657 19 8 1.1474 0.6239 2.7180 20 6 2.3783 -1.1932 3.5856 21 7 1.9981 -0.6057 4.8726 22 6 0.7892 -0.9114 5.6569 23 6 0.9212 -0.0212 6.8767 24 8 0.1486 0.0656 7.8069 25 7 2.0755 0.6544 6.7114 26 6 2.5988 1.6354 7.6654 27 6 2.6872 0.3146 5.5710 28 8 3.7459 0.7866 5.2057 29 1 -0.3634 0.5195 0.8867 30 1 -0.3634 0.5082 -0.8933 31 1 -0.3634 -1.0276 0.0064 32 1 2.3597 -0.0452 -2.0192 33 1 1.3053 -1.4407 -1.6196 34 1 4.3689 0.3080 -0.6753 35 1 7.4868 1.4846 -0.5295 36 1 3.6655 -2.0412 1.3934 37 1 2.1800 -2.7718 0.7117 38 1 1.9877 -2.2087 3.5198 39 1 3.4650 -1.2158 3.5037 40 1 -0.1083 -0.6579 5.0927 41 1 0.7750 -1.9624 5.9457 42 1 1.9137 1.7233 8.5085 43 1 3.5754 1.3090 8.0232 44 1 2.6968 2.6035 7.1742 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989675575.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:54 Heat of formation + Delta-G solvation = -70.069613 kcal Electronic energy + Delta-G solvation = -28508.745274 eV Core-core repulsion = 24462.053323 eV Total energy + Delta-G solvation = -4046.691951 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.40044 -41.16027 -39.79027 -38.79026 -37.31554 -36.23622 -35.74377 -33.29177 -32.96699 -31.02500 -30.07244 -28.18730 -27.61881 -26.68057 -25.69128 -23.98498 -23.09429 -21.68540 -21.21254 -19.99303 -19.22921 -18.70534 -18.44796 -17.93207 -17.72407 -17.27090 -16.84035 -16.38390 -16.32865 -15.74415 -15.52389 -15.39436 -15.27306 -15.06726 -14.79710 -14.74701 -14.44400 -14.03499 -13.71336 -13.56666 -13.44741 -13.33609 -13.19680 -12.97402 -12.89177 -12.68622 -12.25336 -12.15075 -12.12249 -11.98293 -11.60785 -11.47174 -11.43018 -11.22576 -10.99777 -10.95618 -10.03440 -9.61740 -8.94427 -7.91618 -5.20134 0.51098 0.90231 1.48978 1.50193 1.57652 1.59439 1.77212 1.88426 2.25548 2.58474 2.97867 3.40255 3.47695 3.63119 3.87695 3.92245 3.98431 4.11181 4.18452 4.21398 4.31250 4.31657 4.35026 4.41507 4.45244 4.52846 4.64701 4.73093 4.75995 4.84451 4.86048 4.99263 5.13398 5.16405 5.23276 5.29145 5.39444 5.54270 5.59243 5.96098 6.24920 6.29580 6.62138 6.88957 7.16181 7.35957 8.12555 8.32919 9.32373 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.012162 B = 0.003909 C = 0.003187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2301.749256 B = 7161.010962 C = 8783.605561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.133 3.867 3 H 0.028 0.972 4 C -0.122 4.122 5 C 0.153 3.847 6 H 0.090 0.910 7 N -0.730 5.730 8 C -0.229 4.229 9 H 0.091 0.909 10 C -0.080 4.080 11 N -0.974 5.974 12 Si 0.966 3.034 13 H -0.254 1.254 14 H -0.299 1.299 15 H -0.305 1.305 16 C 0.074 3.926 17 N -0.597 5.597 18 C 0.500 3.500 19 O -0.583 6.583 20 C 0.143 3.857 21 N -0.606 5.606 22 C 0.072 3.928 23 C 0.528 3.472 24 O -0.496 6.496 25 N -0.582 5.582 26 C 0.083 3.917 27 C 0.694 3.306 28 O -0.585 6.585 29 H 0.041 0.959 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.069 0.931 33 H 0.117 0.883 34 H 0.367 0.633 35 H 0.246 0.754 36 H 0.068 0.932 37 H 0.111 0.889 38 H 0.173 0.827 39 H 0.106 0.894 40 H 0.137 0.863 41 H 0.173 0.827 42 H 0.111 0.889 43 H 0.085 0.915 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.149 -10.766 9.614 21.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.030 3.970 3 H 0.046 0.954 4 C -0.160 4.160 5 C 0.044 3.956 6 H 0.107 0.893 7 N -0.368 5.368 8 C -0.361 4.361 9 H 0.109 0.891 10 C -0.271 4.271 11 N -0.625 5.625 12 Si 0.796 3.204 13 H -0.178 1.178 14 H -0.227 1.227 15 H -0.234 1.234 16 C -0.051 4.051 17 N -0.330 5.330 18 C 0.288 3.712 19 O -0.464 6.464 20 C 0.018 3.982 21 N -0.342 5.342 22 C -0.051 4.051 23 C 0.318 3.682 24 O -0.369 6.369 25 N -0.327 5.327 26 C -0.057 4.057 27 C 0.396 3.604 28 O -0.461 6.461 29 H 0.060 0.940 30 H 0.094 0.906 31 H 0.097 0.903 32 H 0.088 0.912 33 H 0.136 0.864 34 H 0.198 0.802 35 H 0.054 0.946 36 H 0.086 0.914 37 H 0.129 0.871 38 H 0.191 0.809 39 H 0.124 0.876 40 H 0.155 0.845 41 H 0.190 0.810 42 H 0.129 0.871 43 H 0.104 0.896 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -16.162 -10.096 10.069 21.553 hybrid contribution 1.549 1.220 0.005 1.972 sum -14.613 -8.876 10.074 19.845 Atomic orbital electron populations 1.21986 0.93003 1.03079 1.02075 1.21509 0.95283 0.94852 0.85369 0.95386 1.22967 0.97770 0.99961 0.95304 1.21718 0.85869 0.94436 0.93621 0.89271 1.42616 1.01537 1.05076 1.87606 1.19728 0.84292 0.92426 1.39640 0.89119 1.25549 1.01667 0.95659 1.04262 1.69847 1.29002 1.03684 1.59987 0.85168 0.80558 0.78654 0.75984 1.17791 1.22659 1.23351 1.23418 0.94974 0.87852 0.98879 1.48526 1.51312 1.28828 1.04332 1.21275 0.80359 0.85762 0.83760 1.90647 1.42790 1.28993 1.83932 1.21300 1.02242 0.97877 0.76770 1.47113 1.23687 1.42703 1.20725 1.22810 0.89937 1.03404 0.88994 1.21193 0.79253 0.79989 0.87763 1.90799 1.45058 1.65854 1.35141 1.46359 1.23603 1.41003 1.21774 1.21986 1.01441 0.90619 0.91693 1.16115 0.83524 0.80178 0.80621 1.91015 1.23597 1.58934 1.72544 0.93982 0.90581 0.90302 0.91246 0.86433 0.80222 0.94551 0.91380 0.87071 0.80935 0.87553 0.84515 0.80985 0.87067 0.89644 0.90952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.38 9.11 71.98 0.66 -2.73 16 2 C 0.13 3.98 3.45 45.34 0.16 4.13 16 3 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 4 C -0.12 -3.18 6.05 31.78 0.19 -2.99 16 5 C 0.15 4.82 3.69 46.39 0.17 4.99 16 6 H 0.09 2.54 8.13 -2.39 -0.02 2.52 16 7 N -0.73 -33.61 5.27 -316.37 -1.67 -35.28 16 8 C -0.23 -11.71 9.98 84.03 0.84 -10.87 16 9 H 0.09 4.24 7.83 -2.91 -0.02 4.21 16 10 C -0.08 -4.46 5.50 84.86 0.47 -3.99 16 11 N -0.97 -60.45 13.06 21.65 0.28 -60.17 16 12 Si 0.97 45.33 29.55 68.60 2.03 47.35 16 13 H -0.25 -10.70 7.11 99.48 0.71 -9.99 16 14 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 15 H -0.31 -14.89 7.11 99.48 0.71 -14.19 16 16 C 0.07 1.88 6.38 86.86 0.55 2.44 16 17 N -0.60 -17.60 3.06 -788.04 -2.41 -20.01 16 18 C 0.50 15.61 7.71 87.66 0.68 16.28 16 19 O -0.58 -22.47 15.48 -3.03 -0.05 -22.52 16 20 C 0.14 3.26 5.63 85.63 0.48 3.74 16 21 N -0.61 -14.37 2.51 -846.22 -2.12 -16.49 16 22 C 0.07 1.08 7.66 85.76 0.66 1.73 16 23 C 0.53 11.15 8.32 87.94 0.73 11.88 16 24 O -0.50 -12.20 17.51 -2.89 -0.05 -12.25 16 25 N -0.58 -14.50 3.01 -796.64 -2.39 -16.89 16 26 C 0.08 1.68 10.76 127.77 1.37 3.06 16 27 C 0.69 21.55 8.31 179.44 1.49 23.04 16 28 O -0.58 -24.33 17.34 -3.83 -0.07 -24.39 16 29 H 0.04 1.19 6.89 -2.39 -0.02 1.18 16 30 H 0.08 1.55 8.14 -2.38 -0.02 1.53 16 31 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.12 2.12 7.84 -2.39 -0.02 2.10 16 34 H 0.37 19.51 7.82 -92.71 -0.72 18.79 16 35 H 0.25 15.04 8.31 -92.71 -0.77 14.27 16 36 H 0.07 1.97 7.48 -2.39 -0.02 1.95 16 37 H 0.11 1.78 8.14 -2.39 -0.02 1.77 16 38 H 0.17 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.11 2.90 7.73 -2.39 -0.02 2.89 16 40 H 0.14 1.83 8.14 -2.39 -0.02 1.81 16 41 H 0.17 0.96 8.14 -2.38 -0.02 0.94 16 42 H 0.11 1.79 7.64 -2.39 -0.02 1.77 16 43 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 44 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -84.75 371.75 2.30 -82.45 By element: Atomic # 1 Polarization: 27.18 SS G_CDS: 0.30 Total: 27.48 kcal Atomic # 6 Polarization: 42.26 SS G_CDS: 8.45 Total: 50.71 kcal Atomic # 7 Polarization: -140.53 SS G_CDS: -8.31 Total: -148.84 kcal Atomic # 8 Polarization: -59.00 SS G_CDS: -0.16 Total: -59.16 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.35 kcal Total: -84.75 2.30 -82.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989675575.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.383 kcal (2) G-P(sol) polarization free energy of solvation -84.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds