Wall clock time and date at job start Fri Apr 10 2020 18:32:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 110.40889 * 2 1 4 4 C 1.54912 * 110.36372 * 122.28594 * 2 1 3 5 5 C 1.55162 * 101.57717 * 155.85311 * 4 2 1 6 6 H 1.09002 * 110.72059 * 82.86237 * 5 4 2 7 7 N 1.46502 * 110.72003 * 205.95874 * 5 4 2 8 8 C 1.36933 * 120.00130 * 202.56136 * 7 5 4 9 9 H 1.08000 * 120.00359 * 359.97438 * 8 7 5 10 10 C 1.38813 * 120.00072 * 180.02562 * 8 7 5 11 11 N 1.31621 * 120.00036 * 359.97438 * 10 8 7 12 12 Si 1.86802 * 120.00142 * 180.02562 * 10 8 7 13 13 H 1.48495 * 109.46983 * 359.97438 * 12 10 8 14 14 H 1.48497 * 109.47266 * 119.99387 * 12 10 8 15 15 H 1.48500 * 109.46632 * 239.99752 * 12 10 8 16 16 C 1.54319 * 102.94182 * 324.49866 * 5 4 2 17 17 N 1.47018 * 107.27536 * 22.19457 * 16 5 4 18 18 C 1.34774 * 125.65557 * 181.09314 * 17 16 5 19 19 O 1.21281 * 120.00776 * 179.97438 * 18 17 16 20 20 C 1.50706 * 119.99662 * 359.95921 * 18 17 16 21 21 N 1.46496 * 109.47227 * 179.97438 * 20 18 17 22 22 C 1.47303 * 126.69664 * 269.71363 * 21 20 18 23 23 C 1.51588 * 103.59777 * 179.97438 * 22 21 20 24 24 O 1.21226 * 127.16076 * 180.02562 * 23 22 21 25 25 N 1.34770 * 105.68161 * 0.33377 * 23 22 21 26 26 C 1.46500 * 124.17983 * 179.74285 * 25 23 22 27 27 C 1.33803 * 111.64384 * 359.78097 * 25 23 22 28 28 O 1.21534 * 123.76802 * 180.02562 * 27 25 23 29 29 H 1.09000 * 109.47137 * 297.70904 * 1 2 3 30 30 H 1.09002 * 109.46920 * 57.71568 * 1 2 3 31 31 H 1.09000 * 109.46766 * 177.70690 * 1 2 3 32 32 H 1.08999 * 111.00244 * 37.78040 * 4 2 1 33 33 H 1.09004 * 111.03866 * 273.93552 * 4 2 1 34 34 H 0.97000 * 119.99643 * 22.55638 * 7 5 4 35 35 H 0.97002 * 120.00200 * 180.02562 * 11 10 8 36 36 H 1.09001 * 109.88349 * 141.61302 * 16 5 4 37 37 H 1.09003 * 109.88537 * 262.77719 * 16 5 4 38 38 H 1.08994 * 109.46934 * 300.00320 * 20 18 17 39 39 H 1.09005 * 109.46956 * 59.99703 * 20 18 17 40 40 H 1.09002 * 110.59974 * 298.56287 * 22 21 20 41 41 H 1.09000 * 110.59966 * 61.51106 * 22 21 20 42 42 H 1.08995 * 109.47175 * 270.04502 * 26 25 23 43 43 H 1.08998 * 109.46506 * 30.04235 * 26 25 23 44 44 H 1.09001 * 109.46928 * 150.03944 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9101 1.0216 0.0000 4 6 2.0691 -0.7757 1.2278 5 6 3.4778 -1.1995 0.7344 6 1 4.1945 -0.3899 0.8723 7 7 3.9269 -2.4102 1.4264 8 6 5.2633 -2.6975 1.5061 9 1 5.9865 -2.0318 1.0585 10 6 5.6888 -3.8450 2.1613 11 7 4.8075 -4.6566 2.7064 12 14 7.5120 -4.2365 2.2706 13 1 8.2886 -3.1737 1.5833 14 1 7.9192 -4.3037 3.6971 15 1 7.7775 -5.5437 1.6179 16 6 3.2495 -1.4768 -0.7664 17 7 2.0432 -0.7385 -1.1682 18 6 1.4966 -0.7375 -2.4001 19 8 0.4954 -0.0889 -2.6189 20 6 2.1297 -1.5422 -3.5059 21 7 1.3527 -1.3766 -4.7368 22 6 0.2237 -2.2103 -5.1839 23 6 -0.1828 -1.5823 -6.5024 24 8 -1.0787 -1.9381 -7.2376 25 7 0.6633 -0.5504 -6.6906 26 6 0.6323 0.3374 -7.8555 27 6 1.5358 -0.4374 -5.6824 28 8 2.3970 0.4183 -5.6271 29 1 -0.3633 0.4778 0.9098 30 1 -0.3633 0.5489 -0.8688 31 1 -0.3633 -1.0269 -0.0411 32 1 1.4511 -1.6479 1.4410 33 1 2.1398 -0.1266 2.1006 34 1 3.2774 -3.0083 1.8282 35 1 5.1048 -5.4582 3.1646 36 1 4.1066 -1.1280 -1.3425 37 1 3.1015 -2.5445 -0.9279 38 1 3.1496 -1.1946 -3.6700 39 1 2.1455 -2.5955 -3.2256 40 1 0.5436 -3.2418 -5.3319 41 1 -0.5966 -2.1611 -4.4678 42 1 1.2751 -0.0666 -8.6375 43 1 -0.3894 0.4126 -8.2278 44 1 0.9879 1.3268 -7.5678 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989675577.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:09 Heat of formation + Delta-G solvation = -43.146347 kcal Electronic energy + Delta-G solvation = -27991.610646 eV Core-core repulsion = 23946.086175 eV Total energy + Delta-G solvation = -4045.524471 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.53130 -40.07774 -38.83832 -37.52953 -36.30439 -35.37471 -34.25382 -32.17014 -31.47069 -30.15719 -28.50710 -27.42297 -26.73704 -25.41495 -23.98817 -22.93451 -21.87934 -20.57868 -20.34781 -18.96840 -17.79978 -17.54225 -17.34701 -16.94898 -16.63916 -16.20993 -15.82869 -15.48189 -14.91509 -14.68483 -14.43719 -14.28217 -14.15578 -13.89344 -13.76433 -13.31598 -13.19705 -12.96781 -12.90367 -12.77620 -12.50850 -12.11537 -11.94677 -11.82041 -11.32396 -11.15464 -11.11266 -10.87843 -10.74938 -10.50918 -10.38032 -10.12162 -10.08409 -9.96965 -9.82852 -9.16881 -8.99376 -8.44034 -7.18676 -5.93010 -3.24464 1.36058 1.73951 2.56406 2.64907 2.75858 3.21070 3.34049 3.40910 3.42502 3.75937 4.38254 4.40866 4.50925 4.75561 4.83086 4.93946 4.99776 5.00839 5.06202 5.11801 5.16462 5.22426 5.31471 5.41572 5.50379 5.51640 5.60550 5.76104 5.79822 5.97395 6.03833 6.05623 6.13284 6.33762 6.37844 6.42880 6.59340 6.76313 6.82726 7.05736 7.56504 7.67444 7.82794 8.21615 8.24856 9.36631 9.89533 10.24246 11.28785 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.016655 B = 0.002860 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.797608 B = 9788.351152 C =10569.822912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.137 3.863 3 H 0.073 0.927 4 C -0.137 4.137 5 C 0.173 3.827 6 H 0.068 0.932 7 N -0.713 5.713 8 C -0.250 4.250 9 H 0.074 0.926 10 C -0.008 4.008 11 N -0.929 5.929 12 Si 0.908 3.092 13 H -0.279 1.279 14 H -0.291 1.291 15 H -0.291 1.291 16 C 0.067 3.933 17 N -0.606 5.606 18 C 0.509 3.491 19 O -0.541 6.541 20 C 0.136 3.864 21 N -0.607 5.607 22 C 0.065 3.935 23 C 0.527 3.473 24 O -0.474 6.474 25 N -0.579 5.579 26 C 0.089 3.911 27 C 0.706 3.294 28 O -0.538 6.538 29 H 0.058 0.942 30 H 0.079 0.921 31 H 0.053 0.947 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.387 0.613 35 H 0.257 0.743 36 H 0.062 0.938 37 H 0.076 0.924 38 H 0.121 0.879 39 H 0.121 0.879 40 H 0.126 0.874 41 H 0.126 0.874 42 H 0.072 0.928 43 H 0.087 0.913 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.120 6.419 -14.783 18.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.034 3.966 3 H 0.091 0.909 4 C -0.176 4.176 5 C 0.060 3.940 6 H 0.086 0.914 7 N -0.353 5.353 8 C -0.381 4.381 9 H 0.092 0.908 10 C -0.204 4.204 11 N -0.576 5.576 12 Si 0.738 3.262 13 H -0.204 1.204 14 H -0.218 1.218 15 H -0.218 1.218 16 C -0.058 4.058 17 N -0.340 5.340 18 C 0.295 3.705 19 O -0.419 6.419 20 C 0.011 3.989 21 N -0.345 5.345 22 C -0.061 4.061 23 C 0.315 3.685 24 O -0.345 6.345 25 N -0.326 5.326 26 C -0.052 4.052 27 C 0.408 3.592 28 O -0.412 6.412 29 H 0.077 0.923 30 H 0.097 0.903 31 H 0.072 0.928 32 H 0.095 0.905 33 H 0.099 0.901 34 H 0.222 0.778 35 H 0.067 0.933 36 H 0.081 0.919 37 H 0.094 0.906 38 H 0.139 0.861 39 H 0.139 0.861 40 H 0.144 0.856 41 H 0.144 0.856 42 H 0.091 0.909 43 H 0.106 0.894 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -9.412 7.039 -15.281 19.278 hybrid contribution 0.875 -0.584 0.283 1.089 sum -8.537 6.455 -14.998 18.425 Atomic orbital electron populations 1.22107 0.94277 1.02519 1.02725 1.21881 0.94756 0.95396 0.84580 0.90913 1.23164 0.97791 1.00344 0.96258 1.21156 0.93260 0.91169 0.88388 0.91442 1.42391 1.05541 1.23302 1.64021 1.19298 0.83486 1.05113 1.30214 0.90823 1.24778 0.97768 0.97460 1.00431 1.69667 1.32368 1.14500 1.41055 0.86120 0.84713 0.77924 0.77410 1.20400 1.21756 1.21754 1.23421 0.85122 0.96525 1.00781 1.48640 1.28693 1.48069 1.08620 1.20629 0.84602 0.82558 0.82695 1.90639 1.25539 1.43962 1.81765 1.21177 0.95392 1.02098 0.80187 1.46977 1.34943 1.31787 1.20773 1.22542 0.91704 0.97271 0.94615 1.20850 0.80609 0.79687 0.87387 1.90811 1.28697 1.64376 1.50593 1.46236 1.32249 1.31410 1.22663 1.21820 1.03962 0.94110 0.85297 1.15748 0.81611 0.82074 0.79761 1.90986 1.35268 1.36452 1.78448 0.92321 0.90260 0.92803 0.90476 0.90106 0.77843 0.93333 0.91923 0.90616 0.86146 0.86141 0.85633 0.85626 0.90907 0.89435 0.89184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.08 8.59 37.16 0.32 -1.76 16 2 C 0.14 1.88 3.77 -66.42 -0.25 1.63 16 3 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 4 C -0.14 -1.98 6.12 -24.58 -0.15 -2.13 16 5 C 0.17 2.95 3.59 -66.10 -0.24 2.71 16 6 H 0.07 1.17 8.11 -51.93 -0.42 0.75 16 7 N -0.71 -15.77 5.17 -51.65 -0.27 -16.04 16 8 C -0.25 -6.28 9.97 -15.06 -0.15 -6.43 16 9 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 10 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 11 N -0.93 -26.12 13.06 55.49 0.72 -25.40 16 12 Si 0.91 20.92 29.55 -169.99 -5.02 15.90 16 13 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 14 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 15 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 16 C 0.07 1.00 6.24 -3.07 -0.02 0.98 16 17 N -0.61 -8.51 3.24 -163.05 -0.53 -9.04 16 18 C 0.51 7.14 7.70 -10.98 -0.08 7.05 16 19 O -0.54 -8.97 14.15 5.56 0.08 -8.89 16 20 C 0.14 1.48 5.82 -5.19 -0.03 1.45 16 21 N -0.61 -6.71 2.51 -181.40 -0.45 -7.16 16 22 C 0.06 0.54 7.66 -4.32 -0.03 0.50 16 23 C 0.53 5.43 8.32 -10.55 -0.09 5.35 16 24 O -0.47 -5.87 17.76 5.60 0.10 -5.77 16 25 N -0.58 -6.28 3.01 -128.16 -0.39 -6.66 16 26 C 0.09 0.72 10.73 59.85 0.64 1.36 16 27 C 0.71 9.19 8.31 -88.01 -0.73 8.46 16 28 O -0.54 -8.74 17.15 5.34 0.09 -8.65 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.08 1.17 6.09 -51.93 -0.32 0.86 16 31 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.08 1.17 7.92 -51.93 -0.41 0.76 16 33 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.39 9.23 7.74 -40.82 -0.32 8.91 16 35 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.08 1.17 8.03 -51.93 -0.42 0.76 16 38 H 0.12 1.29 8.03 -51.93 -0.42 0.87 16 39 H 0.12 0.98 8.14 -51.93 -0.42 0.55 16 40 H 0.13 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.13 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.09 0.61 8.00 -51.93 -0.42 0.19 16 44 H 0.09 0.73 7.86 -51.93 -0.41 0.33 16 LS Contribution 370.44 15.07 5.58 5.58 Total: -1.00 -33.24 370.44 -7.47 -40.70 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -6.47 Total: 6.56 kcal Atomic # 6 Polarization: 19.78 SS G_CDS: -0.91 Total: 18.87 kcal Atomic # 7 Polarization: -63.39 SS G_CDS: -0.91 Total: -64.30 kcal Atomic # 8 Polarization: -23.58 SS G_CDS: 0.27 Total: -23.31 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.24 -7.47 -40.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989675577.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.444 kcal (2) G-P(sol) polarization free energy of solvation -33.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds