Wall clock time and date at job start Fri Apr 10 2020 18:32:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.58718 * 2 1 4 4 C 1.53193 * 109.70059 * 239.64658 * 2 1 3 5 5 H 1.09004 * 109.49667 * 65.56100 * 4 2 1 6 6 N 1.46491 * 109.50109 * 305.49212 * 4 2 1 7 7 C 1.34773 * 120.00513 * 155.00158 * 6 4 2 8 8 O 1.21281 * 119.99773 * 359.97438 * 7 6 4 9 9 C 1.50702 * 120.00303 * 180.02562 * 7 6 4 10 10 N 1.46502 * 109.46973 * 180.02562 * 9 7 6 11 11 C 1.47306 * 126.69503 * 90.00168 * 10 9 7 12 12 C 1.51583 * 103.59767 * 179.97438 * 11 10 9 13 13 O 1.21232 * 127.16023 * 179.97438 * 12 11 10 14 14 N 1.34765 * 105.68151 * 359.97438 * 12 11 10 15 15 C 1.33799 * 111.64674 * 359.76964 * 14 12 11 16 16 O 1.21540 * 123.77170 * 180.24497 * 15 14 12 17 17 C 1.53047 * 109.31143 * 185.50534 * 4 2 1 18 18 C 1.53038 * 109.53542 * 61.36995 * 17 4 2 19 19 C 1.53194 * 109.30935 * 298.63058 * 18 17 4 20 20 N 1.46924 * 108.77695 * 54.64041 * 19 18 17 21 21 C 1.36936 * 120.63453 * 126.41226 * 20 19 18 22 22 H 1.08005 * 119.99786 * 209.00420 * 21 20 19 23 23 C 1.38808 * 119.99801 * 28.99967 * 21 20 19 24 24 N 1.31615 * 119.99919 * 15.03704 * 23 21 20 25 25 Si 1.86803 * 119.99890 * 195.02904 * 23 21 20 26 26 H 1.48503 * 109.47142 * 0.02562 * 25 23 21 27 27 H 1.48500 * 109.46750 * 120.00271 * 25 23 21 28 28 H 1.48496 * 109.47304 * 240.00264 * 25 23 21 29 29 H 1.09000 * 109.46858 * 299.71404 * 1 2 3 30 30 H 1.09001 * 109.46812 * 59.70916 * 1 2 3 31 31 H 1.08993 * 109.46980 * 179.71093 * 1 2 3 32 32 H 0.97005 * 119.99966 * 334.99845 * 6 4 2 33 33 H 1.08997 * 109.46731 * 299.99453 * 9 7 6 34 34 H 1.08997 * 109.47371 * 59.99734 * 9 7 6 35 35 H 1.09007 * 110.59467 * 298.48600 * 11 10 9 36 36 H 1.08997 * 110.60141 * 61.43063 * 11 10 9 37 37 H 0.97001 * 124.18141 * 180.02562 * 14 12 11 38 38 H 1.08998 * 109.45683 * 181.38465 * 17 4 2 39 39 H 1.08990 * 109.46101 * 301.35722 * 17 4 2 40 40 H 1.08997 * 109.49540 * 178.68531 * 18 17 4 41 41 H 1.08994 * 109.50149 * 58.58449 * 18 17 4 42 42 H 1.08997 * 109.58728 * 294.84854 * 19 18 17 43 43 H 1.09002 * 109.58393 * 174.42535 * 19 18 17 44 44 H 0.97007 * 119.99487 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0464 -0.7288 -1.2446 5 1 1.7688 -0.1671 -2.1365 6 7 1.4565 -2.0682 -1.3069 7 6 1.3361 -2.6971 -2.4928 8 8 1.7159 -2.1539 -3.5085 9 6 0.7287 -4.0748 -2.5570 10 7 0.7115 -4.5366 -3.9472 11 6 1.7711 -5.2927 -4.6368 12 6 1.2158 -5.4918 -6.0331 13 8 1.7483 -6.0671 -6.9578 14 7 0.0069 -4.8962 -6.0327 15 6 -0.2780 -4.3584 -4.8411 16 8 -1.3133 -3.7714 -4.5949 17 6 3.5706 -0.8443 -1.1675 18 6 3.9602 -1.6608 0.0668 19 6 3.4655 -0.9425 1.3262 20 7 2.0226 -0.6981 1.1953 21 6 1.1535 -1.1126 2.1689 22 1 0.1365 -1.3691 1.9113 23 6 1.5797 -1.2032 3.4869 24 7 2.7013 -0.6225 3.8572 25 14 0.5612 -2.1490 4.7349 26 1 -0.6455 -2.7039 4.0706 27 1 1.3719 -3.2596 5.2956 28 1 0.1477 -1.2358 5.8305 29 1 -0.3633 0.5094 0.8926 30 1 -0.3633 0.5184 -0.8874 31 1 -0.3633 -1.0276 -0.0052 32 1 1.1525 -2.5026 -0.4946 33 1 1.3220 -4.7619 -1.9537 34 1 -0.2906 -4.0408 -2.1724 35 1 2.6947 -4.7146 -4.6705 36 1 1.9363 -6.2533 -4.1490 37 1 -0.5854 -4.8648 -6.8002 38 1 3.9429 -1.3407 -2.0636 39 1 4.0071 0.1519 -1.0964 40 1 5.0446 -1.7624 0.1083 41 1 3.5037 -2.6488 0.0084 42 1 3.9887 0.0075 1.4344 43 1 3.6525 -1.5667 2.2001 44 1 2.9989 -0.6856 4.7783 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000994006036.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:34 Heat of formation + Delta-G solvation = -49.941086 kcal Electronic energy + Delta-G solvation = -28728.470596 eV Core-core repulsion = 24682.651483 eV Total energy + Delta-G solvation = -4045.819113 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 1.89 seconds Orbital eigenvalues (eV) -42.46167 -39.83991 -38.84353 -37.70498 -36.34142 -34.66495 -34.00551 -32.51604 -31.81136 -30.08630 -29.01620 -27.16150 -26.16650 -25.07191 -22.78613 -22.42775 -21.65754 -20.86964 -20.22602 -18.83116 -18.46916 -17.76531 -16.91938 -16.63917 -16.47042 -16.00214 -15.72976 -15.27774 -14.96769 -14.60350 -14.44871 -14.31529 -14.05696 -13.88166 -13.63676 -13.37336 -13.17532 -12.98106 -12.66323 -12.24324 -11.91833 -11.33049 -11.31025 -11.25947 -11.04302 -10.76361 -10.68778 -10.62709 -10.56707 -10.56133 -10.19105 -10.13291 -10.07001 -9.72942 -9.38076 -9.08779 -8.64796 -8.53220 -6.75329 -5.87941 -3.33588 1.33422 1.88349 2.69275 2.77438 2.77980 3.29072 3.37527 3.39087 3.54776 3.76970 4.38785 4.46637 4.69572 4.89308 4.94775 5.06866 5.24407 5.26403 5.38773 5.50852 5.53782 5.67265 5.73180 5.89041 5.98311 6.06060 6.16674 6.25952 6.36954 6.45949 6.57820 6.60352 6.71104 6.74314 6.87166 6.91023 7.02103 7.06400 7.30799 7.60290 7.71567 7.81351 7.90267 8.34856 8.45932 9.11289 9.74140 10.30932 11.19863 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.018496 B = 0.003265 C = 0.003126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.494092 B = 8574.168865 C = 8954.523971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.159 3.841 3 H 0.039 0.961 4 C 0.136 3.864 5 H 0.075 0.925 6 N -0.696 5.696 7 C 0.489 3.511 8 O -0.546 6.546 9 C 0.131 3.869 10 N -0.605 5.605 11 C 0.064 3.936 12 C 0.530 3.470 13 O -0.476 6.476 14 N -0.679 5.679 15 C 0.707 3.293 16 O -0.539 6.539 17 C -0.120 4.120 18 C -0.139 4.139 19 C 0.170 3.830 20 N -0.586 5.586 21 C -0.257 4.257 22 H 0.072 0.928 23 C 0.006 3.994 24 N -0.900 5.900 25 Si 0.900 3.100 26 H -0.277 1.277 27 H -0.290 1.290 28 H -0.291 1.291 29 H 0.064 0.936 30 H 0.039 0.961 31 H 0.053 0.947 32 H 0.410 0.590 33 H 0.119 0.881 34 H 0.121 0.879 35 H 0.127 0.873 36 H 0.126 0.874 37 H 0.432 0.568 38 H 0.049 0.951 39 H 0.062 0.938 40 H 0.046 0.954 41 H 0.052 0.948 42 H 0.017 0.983 43 H 0.088 0.912 44 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.190 -9.036 -12.820 15.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.052 3.948 3 H 0.057 0.943 4 C 0.029 3.971 5 H 0.093 0.907 6 N -0.347 5.347 7 C 0.272 3.728 8 O -0.424 6.424 9 C 0.006 3.994 10 N -0.343 5.343 11 C -0.062 4.062 12 C 0.317 3.683 13 O -0.346 6.346 14 N -0.349 5.349 15 C 0.407 3.593 16 O -0.412 6.412 17 C -0.159 4.159 18 C -0.178 4.178 19 C 0.045 3.955 20 N -0.310 5.310 21 C -0.386 4.386 22 H 0.090 0.910 23 C -0.193 4.193 24 N -0.544 5.544 25 Si 0.730 3.270 26 H -0.202 1.202 27 H -0.216 1.216 28 H -0.218 1.218 29 H 0.083 0.917 30 H 0.058 0.942 31 H 0.072 0.928 32 H 0.246 0.754 33 H 0.137 0.863 34 H 0.139 0.861 35 H 0.145 0.855 36 H 0.143 0.857 37 H 0.274 0.726 38 H 0.068 0.932 39 H 0.081 0.919 40 H 0.065 0.935 41 H 0.071 0.929 42 H 0.035 0.965 43 H 0.106 0.894 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -1.056 -8.580 -13.493 16.025 hybrid contribution -0.691 -0.494 0.818 1.179 sum -1.747 -9.074 -12.675 15.686 Atomic orbital electron populations 1.21783 0.95526 1.01470 1.00556 1.20722 0.93408 0.93930 0.86788 0.94347 1.21541 0.92880 0.82807 0.99856 0.90660 1.45956 1.61333 1.18638 1.08816 1.20945 0.79608 0.87973 0.84269 1.90680 1.50102 1.67148 1.34452 1.21215 1.04932 0.94304 0.78979 1.46922 1.17844 1.57800 1.11761 1.22543 0.94076 0.99724 0.89886 1.20800 0.80844 0.76433 0.90263 1.90854 1.63287 1.39908 1.40541 1.44309 1.21272 1.54182 1.15114 1.15756 0.84040 0.79086 0.80379 1.91038 1.26010 1.44668 1.79445 1.21764 0.95416 1.00540 0.98160 1.22136 0.98913 0.99469 0.97306 1.20819 0.83100 0.97242 0.94364 1.44196 1.03084 1.64943 1.18799 1.19210 0.94915 1.38166 0.86313 0.91025 1.25103 0.97704 0.99531 0.96998 1.70027 1.23340 1.44201 1.16796 0.86272 0.79628 0.79502 0.81611 1.20208 1.21647 1.21798 0.91745 0.94180 0.92757 0.75365 0.86270 0.86127 0.85542 0.85684 0.72629 0.93238 0.91937 0.93485 0.92881 0.96475 0.89371 0.93659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 7.74 37.16 0.29 -2.06 16 2 C 0.16 2.96 3.19 -67.60 -0.22 2.74 16 3 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 4 C 0.14 2.23 2.33 -67.81 -0.16 2.07 16 5 H 0.08 1.30 7.58 -51.93 -0.39 0.90 16 6 N -0.70 -10.11 3.46 -53.69 -0.19 -10.30 16 7 C 0.49 6.77 7.87 -10.99 -0.09 6.68 16 8 O -0.55 -9.43 16.09 5.56 0.09 -9.34 16 9 C 0.13 1.27 6.63 -5.19 -0.03 1.24 16 10 N -0.60 -6.10 2.51 -181.40 -0.45 -6.55 16 11 C 0.06 0.47 7.66 -4.32 -0.03 0.44 16 12 C 0.53 4.87 8.81 -10.56 -0.09 4.78 16 13 O -0.48 -5.58 18.02 5.60 0.10 -5.48 16 14 N -0.68 -6.30 5.70 -15.79 -0.09 -6.39 16 15 C 0.71 8.51 8.68 -88.01 -0.76 7.74 16 16 O -0.54 -8.49 17.71 5.33 0.09 -8.39 16 17 C -0.12 -1.96 5.58 -26.69 -0.15 -2.11 16 18 C -0.14 -2.39 5.93 -26.61 -0.16 -2.55 16 19 C 0.17 3.65 5.29 -3.71 -0.02 3.63 16 20 N -0.59 -12.68 2.65 -164.77 -0.44 -13.11 16 21 C -0.26 -6.10 8.60 -15.06 -0.13 -6.23 16 22 H 0.07 1.65 6.21 -52.48 -0.33 1.32 16 23 C 0.01 0.15 4.96 -17.43 -0.09 0.06 16 24 N -0.90 -24.25 11.14 55.49 0.62 -23.63 16 25 Si 0.90 19.97 29.58 -169.99 -5.03 14.94 16 26 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 27 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 28 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 29 H 0.06 1.21 7.62 -51.93 -0.40 0.81 16 30 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.05 0.91 6.41 -51.93 -0.33 0.58 16 32 H 0.41 5.93 7.78 -40.82 -0.32 5.61 16 33 H 0.12 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.12 1.12 8.03 -51.93 -0.42 0.70 16 35 H 0.13 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.13 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.43 3.15 8.96 -40.82 -0.37 2.79 16 38 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 41 H 0.05 0.89 7.53 -51.93 -0.39 0.50 16 42 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.09 2.14 6.06 -51.93 -0.31 1.83 16 44 H 0.25 6.68 8.31 -40.82 -0.34 6.34 16 LS Contribution 359.20 15.07 5.41 5.41 Total: -1.00 -32.50 359.20 -7.71 -40.22 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -6.19 Total: 6.20 kcal Atomic # 6 Polarization: 18.07 SS G_CDS: -1.64 Total: 16.43 kcal Atomic # 7 Polarization: -59.43 SS G_CDS: -0.55 Total: -59.98 kcal Atomic # 8 Polarization: -23.50 SS G_CDS: 0.28 Total: -23.21 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.03 Total: 14.94 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.50 -7.71 -40.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994006036.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.726 kcal (2) G-P(sol) polarization free energy of solvation -32.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.89 seconds