Wall clock time and date at job start Fri Apr 10 2020 18:32:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.58718 * 2 1 4 4 C 1.53193 * 109.70059 * 239.64658 * 2 1 3 5 5 H 1.09004 * 109.49667 * 65.56100 * 4 2 1 6 6 N 1.46491 * 109.50109 * 305.49212 * 4 2 1 7 7 C 1.34773 * 120.00513 * 155.00158 * 6 4 2 8 8 O 1.21281 * 119.99773 * 359.97438 * 7 6 4 9 9 C 1.50702 * 120.00303 * 180.02562 * 7 6 4 10 10 N 1.46502 * 109.46973 * 180.02562 * 9 7 6 11 11 C 1.47306 * 126.69503 * 90.00168 * 10 9 7 12 12 C 1.51583 * 103.59767 * 179.97438 * 11 10 9 13 13 O 1.21232 * 127.16023 * 179.97438 * 12 11 10 14 14 N 1.34765 * 105.68151 * 359.97438 * 12 11 10 15 15 C 1.33799 * 111.64674 * 359.76964 * 14 12 11 16 16 O 1.21540 * 123.77170 * 180.24497 * 15 14 12 17 17 C 1.53047 * 109.31143 * 185.50534 * 4 2 1 18 18 C 1.53038 * 109.53542 * 61.36995 * 17 4 2 19 19 C 1.53194 * 109.30935 * 298.63058 * 18 17 4 20 20 N 1.46924 * 108.77695 * 54.64041 * 19 18 17 21 21 C 1.36936 * 120.63453 * 126.41226 * 20 19 18 22 22 H 1.08005 * 119.99786 * 209.00420 * 21 20 19 23 23 C 1.38808 * 119.99801 * 28.99967 * 21 20 19 24 24 N 1.31615 * 119.99919 * 15.03704 * 23 21 20 25 25 Si 1.86803 * 119.99890 * 195.02904 * 23 21 20 26 26 H 1.48503 * 109.47142 * 0.02562 * 25 23 21 27 27 H 1.48500 * 109.46750 * 120.00271 * 25 23 21 28 28 H 1.48496 * 109.47304 * 240.00264 * 25 23 21 29 29 H 1.09000 * 109.46858 * 299.71404 * 1 2 3 30 30 H 1.09001 * 109.46812 * 59.70916 * 1 2 3 31 31 H 1.08993 * 109.46980 * 179.71093 * 1 2 3 32 32 H 0.97005 * 119.99966 * 334.99845 * 6 4 2 33 33 H 1.08997 * 109.46731 * 299.99453 * 9 7 6 34 34 H 1.08997 * 109.47371 * 59.99734 * 9 7 6 35 35 H 1.09007 * 110.59467 * 298.48600 * 11 10 9 36 36 H 1.08997 * 110.60141 * 61.43063 * 11 10 9 37 37 H 0.97001 * 124.18141 * 180.02562 * 14 12 11 38 38 H 1.08998 * 109.45683 * 181.38465 * 17 4 2 39 39 H 1.08990 * 109.46101 * 301.35722 * 17 4 2 40 40 H 1.08997 * 109.49540 * 178.68531 * 18 17 4 41 41 H 1.08994 * 109.50149 * 58.58449 * 18 17 4 42 42 H 1.08997 * 109.58728 * 294.84854 * 19 18 17 43 43 H 1.09002 * 109.58393 * 174.42535 * 19 18 17 44 44 H 0.97007 * 119.99487 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0464 -0.7288 -1.2446 5 1 1.7688 -0.1671 -2.1365 6 7 1.4565 -2.0682 -1.3069 7 6 1.3361 -2.6971 -2.4928 8 8 1.7159 -2.1539 -3.5085 9 6 0.7287 -4.0748 -2.5570 10 7 0.7115 -4.5366 -3.9472 11 6 1.7711 -5.2927 -4.6368 12 6 1.2158 -5.4918 -6.0331 13 8 1.7483 -6.0671 -6.9578 14 7 0.0069 -4.8962 -6.0327 15 6 -0.2780 -4.3584 -4.8411 16 8 -1.3133 -3.7714 -4.5949 17 6 3.5706 -0.8443 -1.1675 18 6 3.9602 -1.6608 0.0668 19 6 3.4655 -0.9425 1.3262 20 7 2.0226 -0.6981 1.1953 21 6 1.1535 -1.1126 2.1689 22 1 0.1365 -1.3691 1.9113 23 6 1.5797 -1.2032 3.4869 24 7 2.7013 -0.6225 3.8572 25 14 0.5612 -2.1490 4.7349 26 1 -0.6455 -2.7039 4.0706 27 1 1.3719 -3.2596 5.2956 28 1 0.1477 -1.2358 5.8305 29 1 -0.3633 0.5094 0.8926 30 1 -0.3633 0.5184 -0.8874 31 1 -0.3633 -1.0276 -0.0052 32 1 1.1525 -2.5026 -0.4946 33 1 1.3220 -4.7619 -1.9537 34 1 -0.2906 -4.0408 -2.1724 35 1 2.6947 -4.7146 -4.6705 36 1 1.9363 -6.2533 -4.1490 37 1 -0.5854 -4.8648 -6.8002 38 1 3.9429 -1.3407 -2.0636 39 1 4.0071 0.1519 -1.0964 40 1 5.0446 -1.7624 0.1083 41 1 3.5037 -2.6488 0.0084 42 1 3.9887 0.0075 1.4344 43 1 3.6525 -1.5667 2.2001 44 1 2.9989 -0.6856 4.7783 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000994006036.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:32 Heat of formation + Delta-G solvation = -73.478478 kcal Electronic energy + Delta-G solvation = -28729.491253 eV Core-core repulsion = 24682.651483 eV Total energy + Delta-G solvation = -4046.839770 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 2.83 seconds Orbital eigenvalues (eV) -43.25705 -41.06030 -39.75246 -39.07260 -37.26965 -35.64791 -35.37130 -33.98186 -33.37900 -31.43412 -30.05179 -28.15124 -27.51385 -26.77304 -23.99771 -23.33416 -22.82967 -22.32032 -21.35022 -20.25186 -19.28758 -18.67947 -18.23778 -17.71158 -17.55512 -17.05692 -16.86139 -16.66532 -16.18031 -15.74481 -15.65633 -15.40706 -15.20174 -15.02260 -14.90610 -14.70822 -14.47300 -14.19562 -13.97208 -13.51937 -13.15574 -12.90841 -12.83627 -12.68641 -12.40177 -12.27088 -12.15590 -12.14264 -11.85383 -11.61320 -11.48746 -11.43214 -11.32623 -11.18091 -10.98453 -10.46505 -9.99035 -9.86514 -8.57386 -7.77239 -5.23880 0.56966 1.11777 1.52753 1.57263 1.64735 1.71267 1.90323 2.01055 2.49768 2.58512 3.07028 3.39591 3.62930 3.78971 3.82954 4.07394 4.11773 4.26215 4.28745 4.35901 4.42524 4.44794 4.61084 4.68976 4.70225 4.82318 4.97553 5.04524 5.05004 5.09469 5.17985 5.21199 5.28250 5.39119 5.48360 5.61803 5.69893 5.79947 5.86704 5.94410 6.32635 6.48788 6.72343 7.01709 7.24231 7.35534 7.94133 8.47071 9.29319 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.018496 B = 0.003265 C = 0.003126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.494092 B = 8574.168865 C = 8954.523971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.156 3.844 3 H 0.023 0.977 4 C 0.147 3.853 5 H 0.071 0.929 6 N -0.694 5.694 7 C 0.489 3.511 8 O -0.581 6.581 9 C 0.134 3.866 10 N -0.603 5.603 11 C 0.068 3.932 12 C 0.534 3.466 13 O -0.503 6.503 14 N -0.673 5.673 15 C 0.702 3.298 16 O -0.583 6.583 17 C -0.113 4.113 18 C -0.123 4.123 19 C 0.177 3.823 20 N -0.595 5.595 21 C -0.243 4.243 22 H 0.084 0.916 23 C -0.050 4.050 24 N -0.938 5.938 25 Si 0.958 3.042 26 H -0.259 1.259 27 H -0.295 1.295 28 H -0.306 1.306 29 H 0.045 0.955 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.413 0.587 33 H 0.165 0.835 34 H 0.128 0.872 35 H 0.134 0.866 36 H 0.168 0.832 37 H 0.437 0.563 38 H 0.059 0.941 39 H 0.058 0.942 40 H 0.060 0.940 41 H 0.064 0.936 42 H -0.012 1.012 43 H 0.058 0.942 44 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.559 -11.071 -13.743 17.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.050 3.950 3 H 0.041 0.959 4 C 0.040 3.960 5 H 0.089 0.911 6 N -0.345 5.345 7 C 0.275 3.725 8 O -0.461 6.461 9 C 0.010 3.990 10 N -0.340 5.340 11 C -0.056 4.056 12 C 0.323 3.677 13 O -0.375 6.375 14 N -0.342 5.342 15 C 0.403 3.597 16 O -0.459 6.459 17 C -0.152 4.152 18 C -0.162 4.162 19 C 0.052 3.948 20 N -0.319 5.319 21 C -0.373 4.373 22 H 0.101 0.899 23 C -0.245 4.245 24 N -0.585 5.585 25 Si 0.788 3.212 26 H -0.183 1.183 27 H -0.222 1.222 28 H -0.234 1.234 29 H 0.064 0.936 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.250 0.750 33 H 0.182 0.818 34 H 0.146 0.854 35 H 0.151 0.849 36 H 0.185 0.815 37 H 0.281 0.719 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.079 0.921 41 H 0.082 0.918 42 H 0.006 0.994 43 H 0.077 0.923 44 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -1.429 -10.647 -14.451 18.006 hybrid contribution -0.572 0.214 1.030 1.197 sum -2.001 -10.433 -13.421 17.117 Atomic orbital electron populations 1.21701 0.94342 1.01979 1.00538 1.20816 0.94380 0.93258 0.86560 0.95900 1.21209 0.92978 0.83837 0.98009 0.91086 1.45884 1.61382 1.17831 1.09448 1.21653 0.78606 0.89148 0.83116 1.90673 1.51633 1.68357 1.35471 1.21391 1.05794 0.92487 0.79356 1.47055 1.17875 1.57230 1.11791 1.22791 0.92988 1.01389 0.88454 1.21061 0.80389 0.75525 0.90760 1.90853 1.63769 1.41171 1.41671 1.44261 1.21624 1.53611 1.14720 1.15962 0.83927 0.78745 0.81073 1.91005 1.27900 1.46722 1.80286 1.21694 0.95285 1.00305 0.97884 1.21931 0.99694 0.99346 0.95218 1.20614 0.83118 0.95676 0.95427 1.44372 1.02963 1.65372 1.19204 1.19562 0.95376 1.35937 0.86464 0.89888 1.25763 0.98821 1.01101 0.98832 1.70189 1.25276 1.46507 1.16498 0.85336 0.78828 0.77809 0.79222 1.18319 1.22222 1.23392 0.93552 0.92392 0.91925 0.75037 0.81772 0.85371 0.84867 0.81462 0.71931 0.92243 0.92324 0.92134 0.91767 0.99426 0.92341 0.94576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.25 7.74 71.98 0.56 -3.69 16 2 C 0.16 5.70 3.19 44.98 0.14 5.85 16 3 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 4 C 0.15 4.58 2.33 45.07 0.10 4.69 16 5 H 0.07 2.33 7.58 -2.38 -0.02 2.32 16 6 N -0.69 -18.29 3.46 -442.17 -1.53 -19.82 16 7 C 0.49 12.08 7.87 87.66 0.69 12.77 16 8 O -0.58 -18.73 16.09 -3.03 -0.05 -18.78 16 9 C 0.13 2.08 6.63 85.63 0.57 2.65 16 10 N -0.60 -10.16 2.51 -846.23 -2.12 -12.28 16 11 C 0.07 0.75 7.66 85.76 0.66 1.40 16 12 C 0.53 8.61 8.81 87.94 0.77 9.39 16 13 O -0.50 -10.93 18.02 -2.88 -0.05 -10.99 16 14 N -0.67 -11.44 5.70 -441.11 -2.52 -13.96 16 15 C 0.70 15.61 8.68 179.44 1.56 17.17 16 16 O -0.58 -17.79 17.71 -3.84 -0.07 -17.86 16 17 C -0.11 -3.48 5.58 30.62 0.17 -3.31 16 18 C -0.12 -4.03 5.93 30.67 0.18 -3.85 16 19 C 0.18 7.65 5.29 86.36 0.46 8.11 16 20 N -0.60 -25.49 2.65 -675.23 -1.79 -27.28 16 21 C -0.24 -11.38 8.60 84.03 0.72 -10.66 16 22 H 0.08 3.66 6.21 -2.91 -0.02 3.64 16 23 C -0.05 -2.53 4.96 84.86 0.42 -2.11 16 24 N -0.94 -51.83 11.14 21.65 0.24 -51.59 16 25 Si 0.96 41.03 29.58 68.60 2.03 43.06 16 26 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 27 H -0.30 -12.77 7.11 99.48 0.71 -12.06 16 28 H -0.31 -13.74 7.11 99.48 0.71 -13.04 16 29 H 0.05 1.69 7.62 -2.39 -0.02 1.67 16 30 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.06 1.96 6.41 -2.39 -0.02 1.94 16 32 H 0.41 10.65 7.78 -92.70 -0.72 9.93 16 33 H 0.16 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.13 1.91 8.03 -2.39 -0.02 1.89 16 35 H 0.13 1.44 8.14 -2.38 -0.02 1.42 16 36 H 0.17 0.50 8.14 -2.39 -0.02 0.48 16 37 H 0.44 6.01 8.96 -92.71 -0.83 5.18 16 38 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 40 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 41 H 0.06 1.98 7.53 -2.39 -0.02 1.96 16 42 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 43 H 0.06 2.89 6.06 -2.39 -0.01 2.88 16 44 H 0.24 13.36 8.31 -92.70 -0.77 12.58 16 Total: -1.00 -72.00 359.20 0.65 -71.35 By element: Atomic # 1 Polarization: 20.25 SS G_CDS: -0.50 Total: 19.75 kcal Atomic # 6 Polarization: 31.39 SS G_CDS: 7.00 Total: 38.40 kcal Atomic # 7 Polarization: -117.21 SS G_CDS: -7.72 Total: -124.93 kcal Atomic # 8 Polarization: -47.46 SS G_CDS: -0.17 Total: -47.63 kcal Atomic # 14 Polarization: 41.03 SS G_CDS: 2.03 Total: 43.06 kcal Total: -72.00 0.65 -71.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994006036.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.126 kcal (2) G-P(sol) polarization free energy of solvation -72.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.83 seconds