Wall clock time and date at job start Fri Apr 10 2020 18:33:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08993 * 109.69803 * 2 1 4 4 C 1.53188 * 109.58539 * 120.35710 * 2 1 3 5 5 H 1.09005 * 109.50104 * 54.44021 * 4 2 1 6 6 N 1.46500 * 109.49577 * 294.37036 * 4 2 1 7 7 C 1.34783 * 119.99829 * 155.00433 * 6 4 2 8 8 O 1.21285 * 119.99835 * 359.97438 * 7 6 4 9 9 C 1.50698 * 119.99708 * 180.02562 * 7 6 4 10 10 N 1.46504 * 109.46845 * 179.97438 * 9 7 6 11 11 C 1.34772 * 124.17802 * 89.99565 * 10 9 7 12 12 O 1.21240 * 127.15502 * 0.02562 * 11 10 9 13 13 C 1.51577 * 105.68669 * 180.02562 * 11 10 9 14 14 N 1.47310 * 103.73064 * 359.92750 * 13 11 10 15 15 C 1.33790 * 124.17853 * 270.03613 * 10 9 7 16 16 O 1.21537 * 123.77305 * 359.96118 * 15 10 9 17 17 C 1.53047 * 109.31189 * 174.42284 * 4 2 1 18 18 C 1.53043 * 109.53628 * 298.63186 * 17 4 2 19 19 C 1.53190 * 109.31148 * 61.36634 * 18 17 4 20 20 N 1.46928 * 109.58516 * 239.64250 * 2 1 3 21 21 C 1.36943 * 120.63260 * 6.58337 * 20 2 1 22 22 H 1.07994 * 119.99875 * 330.16603 * 21 20 2 23 23 C 1.38811 * 120.00026 * 150.16673 * 21 20 2 24 24 N 1.31618 * 119.99786 * 344.49558 * 23 21 20 25 25 Si 1.86795 * 120.00110 * 164.49815 * 23 21 20 26 26 H 1.48505 * 109.46932 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.47070 * 119.99625 * 25 23 21 28 28 H 1.48498 * 109.47096 * 239.99885 * 25 23 21 29 29 H 1.08993 * 109.47366 * 299.64515 * 1 2 3 30 30 H 1.09002 * 109.47116 * 59.64844 * 1 2 3 31 31 H 1.09011 * 109.46856 * 179.64337 * 1 2 3 32 32 H 0.96997 * 120.00379 * 335.00128 * 6 4 2 33 33 H 1.08990 * 109.47282 * 59.99685 * 9 7 6 34 34 H 1.08999 * 109.47097 * 299.98980 * 9 7 6 35 35 H 1.09006 * 110.59830 * 118.53034 * 13 11 10 36 36 H 1.08997 * 110.60504 * 241.32207 * 13 11 10 37 37 H 0.97003 * 126.68902 * 180.02562 * 14 13 11 38 38 H 1.09003 * 109.45693 * 58.65069 * 17 4 2 39 39 H 1.08995 * 109.45769 * 178.61154 * 17 4 2 40 40 H 1.08995 * 109.49718 * 301.41283 * 18 17 4 41 41 H 1.09001 * 109.49722 * 181.31515 * 18 17 4 42 42 H 1.09003 * 109.58560 * 185.57787 * 19 18 17 43 43 H 1.09001 * 109.70729 * 65.21904 * 19 18 17 44 44 H 0.97001 * 120.00234 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0261 0.0000 4 6 2.0435 -0.7294 1.2454 5 1 1.6025 -1.7252 1.2916 6 7 1.6705 0.0267 2.4434 7 6 1.5473 -0.6049 3.6277 8 8 1.7446 -1.7993 3.7014 9 6 1.1630 0.1729 4.8600 10 7 1.0953 -0.7342 6.0085 11 6 2.1375 -1.0113 6.8168 12 8 3.2650 -0.5733 6.7342 13 6 1.6068 -1.9844 7.8507 14 7 0.1939 -2.1599 7.4729 15 6 -0.0085 -1.3904 6.3840 16 8 -1.0757 -1.3016 5.8092 17 6 3.5675 -0.8480 1.1701 18 6 3.9569 -1.6658 -0.0635 19 6 3.4651 -0.9470 -1.3237 20 7 2.0225 -0.6996 -1.1945 21 6 1.1536 -1.1136 -2.1686 22 1 0.1398 -1.3810 -1.9097 23 6 1.5759 -1.1895 -3.4887 24 7 2.6863 -0.5884 -3.8600 25 14 0.5682 -2.1448 -4.7382 26 1 -0.6264 -2.7235 -4.0723 27 1 0.1353 -1.2323 -5.8268 28 1 1.3948 -3.2387 -5.3086 29 1 -0.3634 0.5083 0.8931 30 1 -0.3633 0.5193 -0.8868 31 1 -0.3633 -1.0278 -0.0064 32 1 1.5124 0.9819 2.3845 33 1 0.1894 0.6381 4.7070 34 1 1.9089 0.9447 5.0497 35 1 2.1399 -2.9335 7.7933 36 1 1.6863 -1.5613 8.8521 37 1 -0.4602 -2.7201 7.9194 38 1 4.0061 0.1474 1.0992 39 1 3.9378 -1.3448 2.0668 40 1 3.4984 -2.6528 -0.0052 41 1 5.0412 -1.7696 -0.1037 42 1 3.6518 -1.5718 -2.1972 43 1 3.9900 0.0019 -1.4343 44 1 2.9813 -0.6411 -4.7826 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000994361959.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:01 Heat of formation + Delta-G solvation = -49.785182 kcal Electronic energy + Delta-G solvation = -28484.688244 eV Core-core repulsion = 24438.875892 eV Total energy + Delta-G solvation = -4045.812352 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.59815 -39.71713 -38.81976 -37.67979 -36.34823 -34.89752 -34.32748 -32.59902 -31.71012 -29.85153 -28.54180 -27.70226 -26.08544 -24.98311 -23.21607 -22.58237 -21.18175 -20.70337 -20.17450 -19.37201 -18.33041 -17.87187 -17.08844 -16.59472 -16.36748 -16.07177 -15.58117 -15.34773 -15.07828 -14.74834 -14.44256 -14.28144 -14.11681 -13.77516 -13.71755 -13.47333 -13.30319 -12.92272 -12.58161 -12.34331 -11.71725 -11.54178 -11.29268 -11.10676 -10.93025 -10.75592 -10.67430 -10.56946 -10.54787 -10.29741 -10.12445 -10.02550 -9.89087 -9.81893 -9.54824 -9.32883 -8.72307 -8.46143 -6.67113 -5.79929 -3.24617 1.35465 1.77508 2.64183 2.68219 2.82223 3.34937 3.37409 3.45745 3.48263 3.67789 4.41496 4.48349 4.60706 4.68559 4.77692 4.89756 5.12309 5.28553 5.29266 5.39509 5.51347 5.59936 5.78314 5.96210 6.07411 6.21272 6.33453 6.41618 6.42044 6.52625 6.60507 6.69858 6.70321 6.74604 6.83711 6.98972 7.04616 7.07394 7.39301 7.62359 7.66482 7.82268 7.82437 8.29248 8.44903 9.19903 9.82374 10.38887 11.28839 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.023634 B = 0.002965 C = 0.002795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.432897 B = 9442.292969 C =10014.252496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.168 3.832 3 H 0.029 0.971 4 C 0.131 3.869 5 H 0.086 0.914 6 N -0.712 5.712 7 C 0.499 3.501 8 O -0.533 6.533 9 C 0.099 3.901 10 N -0.560 5.560 11 C 0.526 3.474 12 O -0.466 6.466 13 C 0.066 3.934 14 N -0.729 5.729 15 C 0.707 3.293 16 O -0.537 6.537 17 C -0.116 4.116 18 C -0.140 4.140 19 C 0.170 3.830 20 N -0.582 5.582 21 C -0.252 4.252 22 H 0.071 0.929 23 C 0.005 3.995 24 N -0.902 5.902 25 Si 0.901 3.099 26 H -0.277 1.277 27 H -0.290 1.290 28 H -0.289 1.289 29 H 0.039 0.961 30 H 0.064 0.936 31 H 0.054 0.946 32 H 0.398 0.602 33 H 0.127 0.873 34 H 0.125 0.875 35 H 0.124 0.876 36 H 0.124 0.876 37 H 0.442 0.558 38 H 0.055 0.945 39 H 0.049 0.951 40 H 0.056 0.944 41 H 0.052 0.948 42 H 0.087 0.913 43 H 0.020 0.980 44 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.620 1.675 23.869 23.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.060 3.940 3 H 0.046 0.954 4 C 0.026 3.974 5 H 0.104 0.896 6 N -0.363 5.363 7 C 0.282 3.718 8 O -0.410 6.410 9 C -0.027 4.027 10 N -0.306 5.306 11 C 0.313 3.687 12 O -0.335 6.335 13 C -0.062 4.062 14 N -0.395 5.395 15 C 0.408 3.592 16 O -0.410 6.410 17 C -0.155 4.155 18 C -0.180 4.180 19 C 0.044 3.956 20 N -0.305 5.305 21 C -0.382 4.382 22 H 0.088 0.912 23 C -0.194 4.194 24 N -0.546 5.546 25 Si 0.731 3.269 26 H -0.202 1.202 27 H -0.217 1.217 28 H -0.216 1.216 29 H 0.058 0.942 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.232 0.768 33 H 0.145 0.855 34 H 0.143 0.857 35 H 0.142 0.858 36 H 0.141 0.859 37 H 0.286 0.714 38 H 0.073 0.927 39 H 0.067 0.933 40 H 0.074 0.926 41 H 0.070 0.930 42 H 0.105 0.895 43 H 0.038 0.962 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -1.353 1.172 23.286 23.354 hybrid contribution -0.656 -0.295 -0.559 0.911 sum -2.009 0.877 22.726 22.832 Atomic orbital electron populations 1.21821 0.95558 1.01783 1.00260 1.20566 0.93302 0.93563 0.86570 0.95374 1.21843 0.95155 0.96880 0.83538 0.89596 1.46036 1.69795 1.12273 1.08174 1.20593 0.77804 0.88487 0.84869 1.90721 1.49985 1.14799 1.85463 1.21512 1.06455 0.91604 0.83117 1.45789 1.12327 1.43960 1.28495 1.20886 0.84402 0.81074 0.82333 1.90839 1.17566 1.53029 1.72098 1.22427 0.82928 1.01330 0.99516 1.45411 1.12428 1.50050 1.31609 1.15843 0.83468 0.78916 0.81000 1.91037 1.25280 1.66718 1.57917 1.21757 0.95274 1.00124 0.98345 1.22180 0.99247 0.99689 0.96850 1.20825 0.83119 0.97204 0.94405 1.44045 1.03149 1.65097 1.18244 1.19210 0.95222 1.37736 0.86001 0.91156 1.25086 0.97885 0.99462 0.96972 1.70036 1.24123 1.43755 1.16660 0.86242 0.79669 0.79589 0.81401 1.20189 1.21729 1.21561 0.94235 0.91724 0.92670 0.76818 0.85535 0.85744 0.85787 0.85853 0.71353 0.92661 0.93271 0.92562 0.92973 0.89498 0.96209 0.93698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.55 7.84 37.16 0.29 -2.26 16 2 C 0.17 3.36 3.03 -67.60 -0.21 3.15 16 3 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 4 C 0.13 2.38 2.00 -67.81 -0.14 2.25 16 5 H 0.09 1.83 7.58 -51.93 -0.39 1.44 16 6 N -0.71 -10.10 4.57 -53.68 -0.25 -10.34 16 7 C 0.50 7.40 7.87 -10.98 -0.09 7.31 16 8 O -0.53 -10.19 16.09 5.55 0.09 -10.10 16 9 C 0.10 1.04 6.18 -5.19 -0.03 1.00 16 10 N -0.56 -6.21 2.09 -121.93 -0.26 -6.47 16 11 C 0.53 5.27 8.32 -10.56 -0.09 5.18 16 12 O -0.47 -5.97 17.76 5.59 0.10 -5.87 16 13 C 0.07 0.34 7.96 -4.32 -0.03 0.31 16 14 N -0.73 -4.99 6.61 -65.64 -0.43 -5.42 16 15 C 0.71 8.16 8.63 -87.71 -0.76 7.40 16 16 O -0.54 -8.20 17.48 5.33 0.09 -8.11 16 17 C -0.12 -2.12 5.46 -26.68 -0.15 -2.26 16 18 C -0.14 -2.79 6.08 -26.61 -0.16 -2.95 16 19 C 0.17 4.03 5.28 -3.71 -0.02 4.01 16 20 N -0.58 -14.20 2.99 -164.77 -0.49 -14.69 16 21 C -0.25 -6.74 8.58 -15.06 -0.13 -6.86 16 22 H 0.07 1.85 6.23 -52.49 -0.33 1.53 16 23 C 0.00 0.13 4.94 -17.43 -0.09 0.04 16 24 N -0.90 -25.78 11.23 55.49 0.62 -25.16 16 25 Si 0.90 21.63 29.58 -169.99 -5.03 16.60 16 26 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 27 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 28 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 29 H 0.04 0.60 7.78 -51.93 -0.40 0.20 16 30 H 0.06 1.28 7.67 -51.93 -0.40 0.88 16 31 H 0.05 1.10 7.40 -51.92 -0.38 0.72 16 32 H 0.40 4.34 8.60 -40.82 -0.35 3.99 16 33 H 0.13 1.10 7.86 -51.93 -0.41 0.69 16 34 H 0.12 0.98 8.00 -51.93 -0.42 0.57 16 35 H 0.12 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.12 0.24 8.14 -51.93 -0.42 -0.19 16 37 H 0.44 1.86 8.96 -40.82 -0.37 1.49 16 38 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 39 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 41 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.09 2.31 6.15 -51.93 -0.32 1.99 16 43 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 361.57 15.07 5.45 5.45 Total: -1.00 -36.64 361.57 -7.97 -44.61 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -6.28 Total: 3.18 kcal Atomic # 6 Polarization: 17.91 SS G_CDS: -1.59 Total: 16.32 kcal Atomic # 7 Polarization: -61.28 SS G_CDS: -0.80 Total: -62.09 kcal Atomic # 8 Polarization: -24.36 SS G_CDS: 0.28 Total: -24.08 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.03 Total: 16.60 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -36.64 -7.97 -44.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994361959.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.175 kcal (2) G-P(sol) polarization free energy of solvation -36.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds