Wall clock time and date at job start Fri Apr 10 2020 18:33:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08993 * 109.69803 * 2 1 4 4 C 1.53188 * 109.58539 * 120.35710 * 2 1 3 5 5 H 1.09005 * 109.50104 * 54.44021 * 4 2 1 6 6 N 1.46500 * 109.49577 * 294.37036 * 4 2 1 7 7 C 1.34783 * 119.99829 * 155.00433 * 6 4 2 8 8 O 1.21285 * 119.99835 * 359.97438 * 7 6 4 9 9 C 1.50698 * 119.99708 * 180.02562 * 7 6 4 10 10 N 1.46504 * 109.46845 * 179.97438 * 9 7 6 11 11 C 1.34772 * 124.17802 * 89.99565 * 10 9 7 12 12 O 1.21240 * 127.15502 * 0.02562 * 11 10 9 13 13 C 1.51577 * 105.68669 * 180.02562 * 11 10 9 14 14 N 1.47310 * 103.73064 * 359.92750 * 13 11 10 15 15 C 1.33790 * 124.17853 * 270.03613 * 10 9 7 16 16 O 1.21537 * 123.77305 * 359.96118 * 15 10 9 17 17 C 1.53047 * 109.31189 * 174.42284 * 4 2 1 18 18 C 1.53043 * 109.53628 * 298.63186 * 17 4 2 19 19 C 1.53190 * 109.31148 * 61.36634 * 18 17 4 20 20 N 1.46928 * 109.58516 * 239.64250 * 2 1 3 21 21 C 1.36943 * 120.63260 * 6.58337 * 20 2 1 22 22 H 1.07994 * 119.99875 * 330.16603 * 21 20 2 23 23 C 1.38811 * 120.00026 * 150.16673 * 21 20 2 24 24 N 1.31618 * 119.99786 * 344.49558 * 23 21 20 25 25 Si 1.86795 * 120.00110 * 164.49815 * 23 21 20 26 26 H 1.48505 * 109.46932 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.47070 * 119.99625 * 25 23 21 28 28 H 1.48498 * 109.47096 * 239.99885 * 25 23 21 29 29 H 1.08993 * 109.47366 * 299.64515 * 1 2 3 30 30 H 1.09002 * 109.47116 * 59.64844 * 1 2 3 31 31 H 1.09011 * 109.46856 * 179.64337 * 1 2 3 32 32 H 0.96997 * 120.00379 * 335.00128 * 6 4 2 33 33 H 1.08990 * 109.47282 * 59.99685 * 9 7 6 34 34 H 1.08999 * 109.47097 * 299.98980 * 9 7 6 35 35 H 1.09006 * 110.59830 * 118.53034 * 13 11 10 36 36 H 1.08997 * 110.60504 * 241.32207 * 13 11 10 37 37 H 0.97003 * 126.68902 * 180.02562 * 14 13 11 38 38 H 1.09003 * 109.45693 * 58.65069 * 17 4 2 39 39 H 1.08995 * 109.45769 * 178.61154 * 17 4 2 40 40 H 1.08995 * 109.49718 * 301.41283 * 18 17 4 41 41 H 1.09001 * 109.49722 * 181.31515 * 18 17 4 42 42 H 1.09003 * 109.58560 * 185.57787 * 19 18 17 43 43 H 1.09001 * 109.70729 * 65.21904 * 19 18 17 44 44 H 0.97001 * 120.00234 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0261 0.0000 4 6 2.0435 -0.7294 1.2454 5 1 1.6025 -1.7252 1.2916 6 7 1.6705 0.0267 2.4434 7 6 1.5473 -0.6049 3.6277 8 8 1.7446 -1.7993 3.7014 9 6 1.1630 0.1729 4.8600 10 7 1.0953 -0.7342 6.0085 11 6 2.1375 -1.0113 6.8168 12 8 3.2650 -0.5733 6.7342 13 6 1.6068 -1.9844 7.8507 14 7 0.1939 -2.1599 7.4729 15 6 -0.0085 -1.3904 6.3840 16 8 -1.0757 -1.3016 5.8092 17 6 3.5675 -0.8480 1.1701 18 6 3.9569 -1.6658 -0.0635 19 6 3.4651 -0.9470 -1.3237 20 7 2.0225 -0.6996 -1.1945 21 6 1.1536 -1.1136 -2.1686 22 1 0.1398 -1.3810 -1.9097 23 6 1.5759 -1.1895 -3.4887 24 7 2.6863 -0.5884 -3.8600 25 14 0.5682 -2.1448 -4.7382 26 1 -0.6264 -2.7235 -4.0723 27 1 0.1353 -1.2323 -5.8268 28 1 1.3948 -3.2387 -5.3086 29 1 -0.3634 0.5083 0.8931 30 1 -0.3633 0.5193 -0.8868 31 1 -0.3633 -1.0278 -0.0064 32 1 1.5124 0.9819 2.3845 33 1 0.1894 0.6381 4.7070 34 1 1.9089 0.9447 5.0497 35 1 2.1399 -2.9335 7.7933 36 1 1.6863 -1.5613 8.8521 37 1 -0.4602 -2.7201 7.9194 38 1 4.0061 0.1474 1.0992 39 1 3.9378 -1.3448 2.0668 40 1 3.4984 -2.6528 -0.0052 41 1 5.0412 -1.7696 -0.1037 42 1 3.6518 -1.5718 -2.1972 43 1 3.9900 0.0019 -1.4343 44 1 2.9813 -0.6411 -4.7826 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000994361959.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:00 Heat of formation + Delta-G solvation = -78.661479 kcal Electronic energy + Delta-G solvation = -28485.940414 eV Core-core repulsion = 24438.875892 eV Total energy + Delta-G solvation = -4047.064522 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.36317 -41.02650 -39.66869 -39.24892 -37.19954 -36.00218 -35.59424 -34.30145 -33.44574 -31.37419 -29.62196 -28.44870 -27.68962 -26.83942 -24.16992 -23.89004 -22.42957 -22.24782 -21.38336 -20.89185 -19.11204 -18.88477 -18.25799 -17.90404 -17.45248 -17.32236 -16.87386 -16.33522 -16.29742 -16.09696 -15.59753 -15.58125 -15.28717 -15.14308 -14.98509 -14.83097 -14.60179 -14.32799 -14.06829 -13.43661 -13.31839 -13.23943 -12.84334 -12.72634 -12.53061 -12.38666 -12.18227 -12.02221 -11.87319 -11.80435 -11.72006 -11.57279 -11.38339 -11.19118 -10.69718 -10.54801 -10.39598 -10.07203 -8.65914 -7.87114 -5.33392 0.61481 1.02666 1.44504 1.47617 1.50378 1.56971 1.81019 2.21720 2.31019 2.53166 3.04860 3.28613 3.54017 3.70485 3.76741 3.88989 4.01963 4.15897 4.18284 4.31511 4.32387 4.33583 4.34559 4.50331 4.60417 4.66836 4.74589 4.86364 4.91463 5.01256 5.10776 5.18973 5.26308 5.43530 5.45923 5.56780 5.69820 5.74748 5.83060 5.97532 6.32985 6.40978 6.49958 7.07466 7.14620 7.18006 7.85296 8.36902 9.20021 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.023634 B = 0.002965 C = 0.002795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.432897 B = 9442.292969 C =10014.252496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.165 3.835 3 H 0.039 0.961 4 C 0.148 3.852 5 H 0.053 0.947 6 N -0.701 5.701 7 C 0.496 3.504 8 O -0.580 6.580 9 C 0.101 3.899 10 N -0.568 5.568 11 C 0.517 3.483 12 O -0.500 6.500 13 C 0.075 3.925 14 N -0.710 5.710 15 C 0.698 3.302 16 O -0.584 6.584 17 C -0.108 4.108 18 C -0.130 4.130 19 C 0.177 3.823 20 N -0.601 5.601 21 C -0.254 4.254 22 H 0.070 0.930 23 C -0.047 4.047 24 N -0.932 5.932 25 Si 0.960 3.040 26 H -0.270 1.270 27 H -0.290 1.290 28 H -0.292 1.292 29 H 0.076 0.924 30 H 0.050 0.950 31 H 0.036 0.964 32 H 0.417 0.583 33 H 0.147 0.853 34 H 0.154 0.846 35 H 0.147 0.853 36 H 0.169 0.831 37 H 0.455 0.545 38 H 0.069 0.931 39 H 0.051 0.949 40 H 0.041 0.959 41 H 0.072 0.928 42 H 0.053 0.947 43 H 0.007 0.993 44 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.979 2.116 26.664 26.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.058 3.942 3 H 0.057 0.943 4 C 0.041 3.959 5 H 0.071 0.929 6 N -0.353 5.353 7 C 0.282 3.718 8 O -0.459 6.459 9 C -0.024 4.024 10 N -0.313 5.313 11 C 0.307 3.693 12 O -0.371 6.371 13 C -0.051 4.051 14 N -0.375 5.375 15 C 0.399 3.601 16 O -0.460 6.460 17 C -0.146 4.146 18 C -0.169 4.169 19 C 0.052 3.948 20 N -0.325 5.325 21 C -0.385 4.385 22 H 0.088 0.912 23 C -0.242 4.242 24 N -0.578 5.578 25 Si 0.789 3.211 26 H -0.194 1.194 27 H -0.217 1.217 28 H -0.219 1.219 29 H 0.095 0.905 30 H 0.069 0.931 31 H 0.055 0.945 32 H 0.255 0.745 33 H 0.165 0.835 34 H 0.172 0.828 35 H 0.165 0.835 36 H 0.186 0.814 37 H 0.302 0.698 38 H 0.088 0.912 39 H 0.070 0.930 40 H 0.060 0.940 41 H 0.091 0.909 42 H 0.071 0.929 43 H 0.025 0.975 44 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -1.724 1.625 26.156 26.263 hybrid contribution -0.529 -0.434 -1.346 1.510 sum -2.254 1.191 24.810 24.941 Atomic orbital electron populations 1.21733 0.94520 1.00867 1.01415 1.20728 0.94203 0.93661 0.85578 0.94329 1.21304 0.94853 0.95426 0.84316 0.92909 1.45792 1.69479 1.13015 1.06987 1.21370 0.76461 0.88177 0.85834 1.90699 1.51948 1.17035 1.86222 1.21632 1.08325 0.91369 0.81102 1.45969 1.12729 1.44018 1.28555 1.21661 0.83716 0.81162 0.82769 1.90823 1.18688 1.54470 1.73128 1.22706 0.81322 1.01260 0.99793 1.45405 1.13559 1.48597 1.29958 1.16105 0.82927 0.79369 0.81744 1.91001 1.26895 1.68466 1.59669 1.21666 0.95271 1.00471 0.97210 1.22021 1.00319 0.98657 0.95932 1.20615 0.83187 0.96175 0.94860 1.44282 1.03156 1.65923 1.19145 1.19455 0.95464 1.36881 0.86657 0.91245 1.25753 0.99085 1.00717 0.98661 1.70165 1.25651 1.45323 1.16640 0.85319 0.78473 0.78134 0.79214 1.19426 1.21735 1.21926 0.90496 0.93127 0.94530 0.74528 0.83550 0.82805 0.83511 0.81391 0.69781 0.91198 0.93046 0.94000 0.90896 0.92889 0.97514 0.94176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.68 7.84 71.98 0.56 -4.11 16 2 C 0.17 6.51 3.03 44.97 0.14 6.65 16 3 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 4 C 0.15 5.27 2.00 45.07 0.09 5.36 16 5 H 0.05 2.27 7.58 -2.38 -0.02 2.26 16 6 N -0.70 -18.62 4.57 -442.14 -2.02 -20.64 16 7 C 0.50 14.01 7.87 87.66 0.69 14.70 16 8 O -0.58 -21.92 16.09 -3.04 -0.05 -21.97 16 9 C 0.10 1.90 6.18 85.63 0.53 2.43 16 10 N -0.57 -11.49 2.09 -776.90 -1.63 -13.12 16 11 C 0.52 9.13 8.32 87.94 0.73 9.86 16 12 O -0.50 -11.87 17.76 -2.91 -0.05 -11.92 16 13 C 0.08 0.51 7.96 85.76 0.68 1.19 16 14 N -0.71 -7.71 6.61 -479.83 -3.17 -10.89 16 15 C 0.70 14.94 8.63 179.33 1.55 16.49 16 16 O -0.58 -17.41 17.48 -3.83 -0.07 -17.48 16 17 C -0.11 -3.80 5.46 30.62 0.17 -3.64 16 18 C -0.13 -5.18 6.08 30.67 0.19 -4.99 16 19 C 0.18 8.58 5.28 86.36 0.46 9.04 16 20 N -0.60 -29.77 2.99 -675.23 -2.02 -31.78 16 21 C -0.25 -13.82 8.58 84.03 0.72 -13.10 16 22 H 0.07 3.72 6.23 -2.91 -0.02 3.70 16 23 C -0.05 -2.60 4.94 84.86 0.42 -2.18 16 24 N -0.93 -54.69 11.23 21.65 0.24 -54.44 16 25 Si 0.96 45.31 29.58 68.60 2.03 47.33 16 26 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 27 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 28 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 29 H 0.08 2.19 7.78 -2.39 -0.02 2.17 16 30 H 0.05 1.98 7.67 -2.39 -0.02 1.96 16 31 H 0.04 1.45 7.40 -2.38 -0.02 1.43 16 32 H 0.42 7.91 8.60 -92.71 -0.80 7.12 16 33 H 0.15 2.18 7.86 -2.39 -0.02 2.17 16 34 H 0.15 1.97 8.00 -2.39 -0.02 1.95 16 35 H 0.15 0.50 8.14 -2.38 -0.02 0.48 16 36 H 0.17 -0.23 8.14 -2.39 -0.02 -0.25 16 37 H 0.45 2.53 8.96 -92.71 -0.83 1.70 16 38 H 0.07 2.28 8.14 -2.39 -0.02 2.27 16 39 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 41 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 42 H 0.05 2.92 6.15 -2.39 -0.01 2.90 16 43 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 44 H 0.25 14.19 8.31 -92.71 -0.77 13.41 16 Total: -1.00 -83.23 361.57 -0.39 -83.62 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -0.58 Total: 13.58 kcal Atomic # 6 Polarization: 30.78 SS G_CDS: 6.92 Total: 37.70 kcal Atomic # 7 Polarization: -122.28 SS G_CDS: -8.59 Total: -130.87 kcal Atomic # 8 Polarization: -51.20 SS G_CDS: -0.17 Total: -51.36 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.33 kcal Total: -83.23 -0.39 -83.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994361959.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.956 kcal (2) G-P(sol) polarization free energy of solvation -83.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds