Wall clock time and date at job start Fri Apr 10 2020 18:33:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.70289 * 2 1 4 4 C 1.53192 * 109.58961 * 239.64355 * 2 1 3 5 5 H 1.08994 * 109.49657 * 305.55713 * 4 2 1 6 6 N 1.46500 * 109.49572 * 65.62693 * 4 2 1 7 7 C 1.34784 * 119.99642 * 204.93450 * 6 4 2 8 8 O 1.21279 * 120.00120 * 359.97438 * 7 6 4 9 9 C 1.50693 * 119.99619 * 179.97438 * 7 6 4 10 10 N 1.46499 * 109.46771 * 179.97438 * 9 7 6 11 11 C 1.34771 * 124.18205 * 269.72100 * 10 9 7 12 12 O 1.21234 * 127.15343 * 0.02562 * 11 10 9 13 13 C 1.51580 * 105.68829 * 179.97438 * 11 10 9 14 14 N 1.47310 * 103.59344 * 0.32272 * 13 11 10 15 15 C 1.33792 * 124.17627 * 90.03016 * 10 9 7 16 16 O 1.21539 * 123.77391 * 359.95561 * 15 10 9 17 17 C 1.53044 * 109.33654 * 185.59445 * 4 2 1 18 18 C 1.53032 * 109.54046 * 61.35011 * 17 4 2 19 19 C 1.53187 * 109.31394 * 298.62964 * 18 17 4 20 20 N 1.46931 * 109.61696 * 120.34028 * 2 1 3 21 21 C 1.36939 * 120.60244 * 353.33577 * 20 2 1 22 22 H 1.08004 * 120.00001 * 29.02636 * 21 20 2 23 23 C 1.38813 * 120.00167 * 209.01892 * 21 20 2 24 24 N 1.31615 * 119.99810 * 15.03328 * 23 21 20 25 25 Si 1.86799 * 120.00208 * 195.02482 * 23 21 20 26 26 H 1.48508 * 109.47133 * 0.02562 * 25 23 21 27 27 H 1.48506 * 109.47053 * 120.00283 * 25 23 21 28 28 H 1.48493 * 109.47431 * 240.00284 * 25 23 21 29 29 H 1.09008 * 109.46737 * 180.35325 * 1 2 3 30 30 H 1.08998 * 109.47244 * 300.35314 * 1 2 3 31 31 H 1.08997 * 109.46895 * 60.36128 * 1 2 3 32 32 H 0.96995 * 120.00102 * 24.93812 * 6 4 2 33 33 H 1.09002 * 109.47563 * 60.00455 * 9 7 6 34 34 H 1.08995 * 109.47407 * 299.99902 * 9 7 6 35 35 H 1.09007 * 110.76291 * 241.72042 * 13 11 10 36 36 H 1.08990 * 110.56501 * 118.83628 * 13 11 10 37 37 H 0.96999 * 126.69239 * 179.77168 * 14 13 11 38 38 H 1.09008 * 109.45746 * 181.37138 * 17 4 2 39 39 H 1.09002 * 109.45856 * 301.33740 * 17 4 2 40 40 H 1.09003 * 109.50132 * 58.58513 * 18 17 4 41 41 H 1.08999 * 109.49742 * 178.68153 * 18 17 4 42 42 H 1.09002 * 109.59134 * 174.41877 * 19 18 17 43 43 H 1.08994 * 109.59072 * 294.85251 * 19 18 17 44 44 H 0.97000 * 119.99780 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0261 0.0000 4 6 2.0436 -0.7294 -1.2454 5 1 1.6027 -1.7251 -1.2915 6 7 1.6706 0.0267 -2.4435 7 6 1.5486 -0.6047 -3.6280 8 8 1.7481 -1.7987 -3.7020 9 6 1.1644 0.1729 -4.8602 10 7 1.0995 -0.7337 -6.0092 11 6 2.1415 -1.0045 -6.8199 12 8 3.2669 -0.5610 -6.7387 13 6 1.6141 -1.9798 -7.8534 14 7 0.2017 -2.1564 -7.4738 15 6 -0.0032 -1.3905 -6.3869 16 8 -1.0711 -1.3039 -5.8131 17 6 3.5675 -0.8486 -1.1704 18 6 3.9569 -1.6663 0.0632 19 6 3.4658 -0.9471 1.3234 20 7 2.0233 -0.6991 1.1945 21 6 1.1546 -1.1113 2.1695 22 1 0.1365 -1.3653 1.9135 23 6 1.5825 -1.2029 3.4869 24 7 2.7061 -0.6251 3.8554 25 14 0.5634 -2.1458 4.7366 26 1 -0.6457 -2.6977 4.0741 27 1 1.3721 -3.2585 5.2963 28 1 0.1540 -1.2315 5.8326 29 1 -0.3633 -1.0277 0.0063 30 1 -0.3633 0.5193 0.8868 31 1 -0.3633 0.5082 -0.8932 32 1 1.5115 0.9817 -2.3843 33 1 1.9095 0.9456 -5.0494 34 1 0.1901 0.6372 -4.7078 35 1 2.1478 -2.9286 -7.7970 36 1 1.6921 -1.5561 -8.8545 37 1 -0.4529 -2.7158 -7.9204 38 1 3.9374 -1.3458 -2.0672 39 1 4.0066 0.1466 -1.0997 40 1 3.4979 -2.6533 0.0053 41 1 5.0412 -1.7706 0.1031 42 1 3.6524 -1.5719 2.1969 43 1 3.9914 0.0016 1.4311 44 1 3.0049 -0.6887 4.7761 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000994361961.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:05 Heat of formation + Delta-G solvation = -49.123939 kcal Electronic energy + Delta-G solvation = -28485.839899 eV Core-core repulsion = 24440.056220 eV Total energy + Delta-G solvation = -4045.783678 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.61734 -39.71926 -38.82518 -37.68133 -36.35169 -34.90532 -34.32992 -32.59640 -31.71733 -29.84523 -28.54403 -27.71382 -26.08650 -24.98767 -23.21535 -22.57909 -21.18332 -20.70281 -20.17431 -19.36834 -18.33453 -17.87493 -17.08889 -16.59851 -16.37035 -16.07327 -15.58124 -15.34842 -15.07824 -14.75402 -14.44649 -14.28805 -14.11678 -13.77033 -13.71378 -13.47277 -13.30165 -12.92106 -12.57876 -12.34097 -11.71608 -11.54196 -11.29038 -11.11084 -10.92525 -10.75668 -10.67267 -10.56940 -10.54539 -10.29602 -10.11850 -10.01984 -9.89546 -9.82192 -9.54299 -9.33051 -8.72252 -8.46006 -6.68051 -5.79427 -3.23832 1.35510 1.78037 2.64417 2.68578 2.82177 3.35037 3.37565 3.45841 3.48237 3.67367 4.41594 4.48409 4.60523 4.68667 4.77494 4.89857 5.12500 5.29052 5.29360 5.39422 5.51605 5.60106 5.78621 5.96352 6.07451 6.21267 6.33334 6.41219 6.41570 6.52759 6.60897 6.70068 6.70726 6.75051 6.84137 6.98525 7.04489 7.07197 7.40501 7.62574 7.68074 7.82161 7.82498 8.29386 8.44796 9.20159 9.82666 10.38534 11.29174 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.023638 B = 0.002964 C = 0.002795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.271172 B = 9442.978509 C =10016.400534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.168 3.832 3 H 0.029 0.971 4 C 0.131 3.869 5 H 0.086 0.914 6 N -0.712 5.712 7 C 0.499 3.501 8 O -0.533 6.533 9 C 0.098 3.902 10 N -0.560 5.560 11 C 0.526 3.474 12 O -0.466 6.466 13 C 0.066 3.934 14 N -0.729 5.729 15 C 0.707 3.293 16 O -0.538 6.538 17 C -0.116 4.116 18 C -0.140 4.140 19 C 0.169 3.831 20 N -0.582 5.582 21 C -0.251 4.251 22 H 0.071 0.929 23 C 0.003 3.997 24 N -0.903 5.903 25 Si 0.902 3.098 26 H -0.277 1.277 27 H -0.289 1.289 28 H -0.290 1.290 29 H 0.054 0.946 30 H 0.064 0.936 31 H 0.039 0.961 32 H 0.398 0.602 33 H 0.125 0.875 34 H 0.127 0.873 35 H 0.125 0.875 36 H 0.124 0.876 37 H 0.442 0.558 38 H 0.048 0.952 39 H 0.055 0.945 40 H 0.055 0.945 41 H 0.052 0.948 42 H 0.090 0.910 43 H 0.019 0.981 44 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.664 1.730 -23.876 23.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.060 3.940 3 H 0.046 0.954 4 C 0.026 3.974 5 H 0.104 0.896 6 N -0.363 5.363 7 C 0.283 3.717 8 O -0.410 6.410 9 C -0.027 4.027 10 N -0.306 5.306 11 C 0.313 3.687 12 O -0.335 6.335 13 C -0.062 4.062 14 N -0.394 5.394 15 C 0.408 3.592 16 O -0.410 6.410 17 C -0.155 4.155 18 C -0.180 4.180 19 C 0.044 3.956 20 N -0.306 5.306 21 C -0.381 4.381 22 H 0.089 0.911 23 C -0.195 4.195 24 N -0.547 5.547 25 Si 0.732 3.268 26 H -0.202 1.202 27 H -0.216 1.216 28 H -0.217 1.217 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.058 0.942 32 H 0.232 0.768 33 H 0.142 0.858 34 H 0.145 0.855 35 H 0.143 0.857 36 H 0.142 0.858 37 H 0.286 0.714 38 H 0.067 0.933 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.070 0.930 42 H 0.108 0.892 43 H 0.037 0.963 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -1.394 1.224 -23.293 23.367 hybrid contribution -0.666 -0.284 0.550 0.909 sum -2.059 0.939 -22.743 22.856 Atomic orbital electron populations 1.21822 0.95562 1.01792 1.00268 1.20565 0.93289 0.93572 0.86581 0.95380 1.21839 0.95166 0.96873 0.83528 0.89604 1.46037 1.69800 1.12291 1.08163 1.20587 0.77810 0.88480 0.84863 1.90719 1.49942 1.14827 1.85465 1.21509 1.06451 0.91616 0.83119 1.45791 1.12415 1.44040 1.28360 1.20881 0.84365 0.81129 0.82334 1.90837 1.17703 1.52850 1.72153 1.22437 0.82895 1.01313 0.99527 1.45342 1.12491 1.50027 1.31516 1.15764 0.83488 0.78948 0.81032 1.91040 1.25178 1.66774 1.58046 1.21758 0.95264 1.00122 0.98361 1.22185 0.99249 0.99692 0.96868 1.20856 0.83019 0.97235 0.94510 1.44060 1.03207 1.65140 1.18165 1.19231 0.94815 1.37863 0.86155 0.91094 1.25071 0.97812 0.99677 0.96944 1.70028 1.23280 1.44570 1.16826 0.86231 0.79697 0.79509 0.81396 1.20209 1.21571 1.21741 0.92658 0.91731 0.94217 0.76823 0.85759 0.85542 0.85735 0.85848 0.71387 0.93274 0.92672 0.92578 0.92977 0.89217 0.96275 0.93701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.55 7.84 37.16 0.29 -2.26 16 2 C 0.17 3.36 3.03 -67.60 -0.21 3.15 16 3 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 4 C 0.13 2.39 1.99 -67.81 -0.14 2.25 16 5 H 0.09 1.83 7.58 -51.93 -0.39 1.44 16 6 N -0.71 -10.11 4.57 -53.69 -0.25 -10.35 16 7 C 0.50 7.40 7.86 -10.99 -0.09 7.32 16 8 O -0.53 -10.19 16.09 5.56 0.09 -10.10 16 9 C 0.10 1.04 6.18 -5.20 -0.03 1.00 16 10 N -0.56 -6.22 2.09 -122.03 -0.26 -6.48 16 11 C 0.53 5.26 8.31 -10.55 -0.09 5.17 16 12 O -0.47 -5.97 17.75 5.60 0.10 -5.87 16 13 C 0.07 0.34 7.97 -4.32 -0.03 0.31 16 14 N -0.73 -4.97 6.58 -65.74 -0.43 -5.40 16 15 C 0.71 8.16 8.62 -88.01 -0.76 7.40 16 16 O -0.54 -8.21 17.48 5.33 0.09 -8.12 16 17 C -0.12 -2.12 5.46 -26.69 -0.15 -2.27 16 18 C -0.14 -2.80 6.08 -26.62 -0.16 -2.96 16 19 C 0.17 4.02 5.29 -3.71 -0.02 4.00 16 20 N -0.58 -14.22 2.99 -164.77 -0.49 -14.71 16 21 C -0.25 -6.71 8.61 -15.06 -0.13 -6.84 16 22 H 0.07 1.87 6.20 -52.48 -0.33 1.54 16 23 C 0.00 0.10 4.96 -17.43 -0.09 0.01 16 24 N -0.90 -25.80 11.14 55.49 0.62 -25.19 16 25 Si 0.90 21.64 29.58 -169.99 -5.03 16.61 16 26 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 27 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 28 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 29 H 0.05 1.10 7.41 -51.92 -0.38 0.72 16 30 H 0.06 1.28 7.66 -51.93 -0.40 0.88 16 31 H 0.04 0.60 7.78 -51.93 -0.40 0.20 16 32 H 0.40 4.34 8.60 -40.82 -0.35 3.99 16 33 H 0.12 0.99 8.00 -51.93 -0.42 0.57 16 34 H 0.13 1.10 7.86 -51.93 -0.41 0.69 16 35 H 0.12 0.47 8.14 -51.92 -0.42 0.04 16 36 H 0.12 0.23 8.14 -51.93 -0.42 -0.19 16 37 H 0.44 1.85 8.96 -40.82 -0.37 1.49 16 38 H 0.05 0.90 8.14 -51.92 -0.42 0.48 16 39 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 40 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 41 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.09 2.39 6.06 -51.93 -0.31 2.07 16 43 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 361.38 15.07 5.45 5.45 Total: -1.00 -36.64 361.38 -7.98 -44.62 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -6.28 Total: 3.25 kcal Atomic # 6 Polarization: 17.88 SS G_CDS: -1.59 Total: 16.29 kcal Atomic # 7 Polarization: -61.32 SS G_CDS: -0.81 Total: -62.13 kcal Atomic # 8 Polarization: -24.37 SS G_CDS: 0.28 Total: -24.09 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.03 Total: 16.61 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -36.64 -7.98 -44.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994361961.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.504 kcal (2) G-P(sol) polarization free energy of solvation -36.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds