Wall clock time and date at job start Fri Apr 10 2020 18:33:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.70289 * 2 1 4 4 C 1.53192 * 109.58961 * 239.64355 * 2 1 3 5 5 H 1.08994 * 109.49657 * 305.55713 * 4 2 1 6 6 N 1.46500 * 109.49572 * 65.62693 * 4 2 1 7 7 C 1.34784 * 119.99642 * 204.93450 * 6 4 2 8 8 O 1.21279 * 120.00120 * 359.97438 * 7 6 4 9 9 C 1.50693 * 119.99619 * 179.97438 * 7 6 4 10 10 N 1.46499 * 109.46771 * 179.97438 * 9 7 6 11 11 C 1.34771 * 124.18205 * 269.72100 * 10 9 7 12 12 O 1.21234 * 127.15343 * 0.02562 * 11 10 9 13 13 C 1.51580 * 105.68829 * 179.97438 * 11 10 9 14 14 N 1.47310 * 103.59344 * 0.32272 * 13 11 10 15 15 C 1.33792 * 124.17627 * 90.03016 * 10 9 7 16 16 O 1.21539 * 123.77391 * 359.95561 * 15 10 9 17 17 C 1.53044 * 109.33654 * 185.59445 * 4 2 1 18 18 C 1.53032 * 109.54046 * 61.35011 * 17 4 2 19 19 C 1.53187 * 109.31394 * 298.62964 * 18 17 4 20 20 N 1.46931 * 109.61696 * 120.34028 * 2 1 3 21 21 C 1.36939 * 120.60244 * 353.33577 * 20 2 1 22 22 H 1.08004 * 120.00001 * 29.02636 * 21 20 2 23 23 C 1.38813 * 120.00167 * 209.01892 * 21 20 2 24 24 N 1.31615 * 119.99810 * 15.03328 * 23 21 20 25 25 Si 1.86799 * 120.00208 * 195.02482 * 23 21 20 26 26 H 1.48508 * 109.47133 * 0.02562 * 25 23 21 27 27 H 1.48506 * 109.47053 * 120.00283 * 25 23 21 28 28 H 1.48493 * 109.47431 * 240.00284 * 25 23 21 29 29 H 1.09008 * 109.46737 * 180.35325 * 1 2 3 30 30 H 1.08998 * 109.47244 * 300.35314 * 1 2 3 31 31 H 1.08997 * 109.46895 * 60.36128 * 1 2 3 32 32 H 0.96995 * 120.00102 * 24.93812 * 6 4 2 33 33 H 1.09002 * 109.47563 * 60.00455 * 9 7 6 34 34 H 1.08995 * 109.47407 * 299.99902 * 9 7 6 35 35 H 1.09007 * 110.76291 * 241.72042 * 13 11 10 36 36 H 1.08990 * 110.56501 * 118.83628 * 13 11 10 37 37 H 0.96999 * 126.69239 * 179.77168 * 14 13 11 38 38 H 1.09008 * 109.45746 * 181.37138 * 17 4 2 39 39 H 1.09002 * 109.45856 * 301.33740 * 17 4 2 40 40 H 1.09003 * 109.50132 * 58.58513 * 18 17 4 41 41 H 1.08999 * 109.49742 * 178.68153 * 18 17 4 42 42 H 1.09002 * 109.59134 * 174.41877 * 19 18 17 43 43 H 1.08994 * 109.59072 * 294.85251 * 19 18 17 44 44 H 0.97000 * 119.99780 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0261 0.0000 4 6 2.0436 -0.7294 -1.2454 5 1 1.6027 -1.7251 -1.2915 6 7 1.6706 0.0267 -2.4435 7 6 1.5486 -0.6047 -3.6280 8 8 1.7481 -1.7987 -3.7020 9 6 1.1644 0.1729 -4.8602 10 7 1.0995 -0.7337 -6.0092 11 6 2.1415 -1.0045 -6.8199 12 8 3.2669 -0.5610 -6.7387 13 6 1.6141 -1.9798 -7.8534 14 7 0.2017 -2.1564 -7.4738 15 6 -0.0032 -1.3905 -6.3869 16 8 -1.0711 -1.3039 -5.8131 17 6 3.5675 -0.8486 -1.1704 18 6 3.9569 -1.6663 0.0632 19 6 3.4658 -0.9471 1.3234 20 7 2.0233 -0.6991 1.1945 21 6 1.1546 -1.1113 2.1695 22 1 0.1365 -1.3653 1.9135 23 6 1.5825 -1.2029 3.4869 24 7 2.7061 -0.6251 3.8554 25 14 0.5634 -2.1458 4.7366 26 1 -0.6457 -2.6977 4.0741 27 1 1.3721 -3.2585 5.2963 28 1 0.1540 -1.2315 5.8326 29 1 -0.3633 -1.0277 0.0063 30 1 -0.3633 0.5193 0.8868 31 1 -0.3633 0.5082 -0.8932 32 1 1.5115 0.9817 -2.3843 33 1 1.9095 0.9456 -5.0494 34 1 0.1901 0.6372 -4.7078 35 1 2.1478 -2.9286 -7.7970 36 1 1.6921 -1.5561 -8.8545 37 1 -0.4529 -2.7158 -7.9204 38 1 3.9374 -1.3458 -2.0672 39 1 4.0066 0.1466 -1.0997 40 1 3.4979 -2.6533 0.0053 41 1 5.0412 -1.7706 0.1031 42 1 3.6524 -1.5719 2.1969 43 1 3.9914 0.0016 1.4311 44 1 3.0049 -0.6887 4.7761 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000994361961.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:04 Heat of formation + Delta-G solvation = -77.995384 kcal Electronic energy + Delta-G solvation = -28487.091859 eV Core-core repulsion = 24440.056220 eV Total energy + Delta-G solvation = -4047.035638 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.38112 -41.02945 -39.67326 -39.25128 -37.20261 -36.00746 -35.60147 -34.29858 -33.45211 -31.36687 -29.62305 -28.46213 -27.69167 -26.84279 -24.16631 -23.88864 -22.43105 -22.24809 -21.38284 -20.89135 -19.11577 -18.88614 -18.26165 -17.90323 -17.45747 -17.32244 -16.87909 -16.33634 -16.29555 -16.09843 -15.59069 -15.57729 -15.29001 -15.14521 -14.99066 -14.83212 -14.60089 -14.32406 -14.06786 -13.43719 -13.31773 -13.23786 -12.84422 -12.72681 -12.52772 -12.38095 -12.17944 -12.01607 -11.87416 -11.80234 -11.71934 -11.57241 -11.38330 -11.19119 -10.69809 -10.54542 -10.40254 -10.07198 -8.66775 -7.86578 -5.32516 0.61631 1.03237 1.44695 1.47738 1.50450 1.57047 1.81411 2.21810 2.31171 2.53325 3.04501 3.29007 3.54042 3.70476 3.76941 3.88914 4.01985 4.15864 4.18488 4.31504 4.32374 4.33709 4.34646 4.50471 4.60419 4.67164 4.74622 4.86592 4.91365 5.01336 5.10891 5.18999 5.26297 5.43326 5.46143 5.57909 5.69616 5.75594 5.82648 5.97952 6.32890 6.40939 6.49992 7.07641 7.14769 7.18078 7.85653 8.36604 9.20418 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.023638 B = 0.002964 C = 0.002795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.271172 B = 9442.978509 C =10016.400534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.165 3.835 3 H 0.039 0.961 4 C 0.148 3.852 5 H 0.052 0.948 6 N -0.701 5.701 7 C 0.496 3.504 8 O -0.579 6.579 9 C 0.101 3.899 10 N -0.568 5.568 11 C 0.517 3.483 12 O -0.500 6.500 13 C 0.076 3.924 14 N -0.709 5.709 15 C 0.698 3.302 16 O -0.585 6.585 17 C -0.108 4.108 18 C -0.130 4.130 19 C 0.176 3.824 20 N -0.602 5.602 21 C -0.253 4.253 22 H 0.071 0.929 23 C -0.048 4.048 24 N -0.933 5.933 25 Si 0.960 3.040 26 H -0.270 1.270 27 H -0.293 1.293 28 H -0.291 1.291 29 H 0.036 0.964 30 H 0.050 0.950 31 H 0.076 0.924 32 H 0.417 0.583 33 H 0.154 0.846 34 H 0.147 0.853 35 H 0.148 0.852 36 H 0.169 0.831 37 H 0.455 0.545 38 H 0.051 0.949 39 H 0.069 0.931 40 H 0.041 0.959 41 H 0.072 0.928 42 H 0.056 0.944 43 H 0.006 0.994 44 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.041 2.187 -26.671 26.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.058 3.942 3 H 0.057 0.943 4 C 0.041 3.959 5 H 0.071 0.929 6 N -0.353 5.353 7 C 0.282 3.718 8 O -0.459 6.459 9 C -0.024 4.024 10 N -0.313 5.313 11 C 0.307 3.693 12 O -0.371 6.371 13 C -0.050 4.050 14 N -0.374 5.374 15 C 0.399 3.601 16 O -0.461 6.461 17 C -0.146 4.146 18 C -0.170 4.170 19 C 0.051 3.949 20 N -0.325 5.325 21 C -0.384 4.384 22 H 0.089 0.911 23 C -0.243 4.243 24 N -0.579 5.579 25 Si 0.789 3.211 26 H -0.194 1.194 27 H -0.219 1.219 28 H -0.218 1.218 29 H 0.055 0.945 30 H 0.069 0.931 31 H 0.095 0.905 32 H 0.255 0.745 33 H 0.172 0.828 34 H 0.164 0.836 35 H 0.166 0.834 36 H 0.186 0.814 37 H 0.302 0.698 38 H 0.069 0.931 39 H 0.088 0.912 40 H 0.060 0.940 41 H 0.091 0.909 42 H 0.074 0.926 43 H 0.024 0.976 44 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -1.784 1.693 -26.165 26.280 hybrid contribution -0.532 -0.428 1.337 1.501 sum -2.316 1.265 -24.828 24.968 Atomic orbital electron populations 1.21736 0.94503 1.00881 1.01442 1.20729 0.94208 0.93672 0.85568 0.94314 1.21300 0.94848 0.95423 0.84322 0.92925 1.45792 1.69483 1.13033 1.06973 1.21365 0.76466 0.88169 0.85829 1.90697 1.51907 1.17064 1.86223 1.21627 1.08315 0.91381 0.81106 1.45972 1.12824 1.44101 1.28424 1.21659 0.83672 0.81224 0.82770 1.90821 1.18825 1.54295 1.73182 1.22719 0.81285 1.01241 0.99801 1.45337 1.13624 1.48566 1.29866 1.16022 0.82943 0.79402 0.81778 1.91003 1.26799 1.68525 1.59799 1.21666 0.95281 1.00462 0.97211 1.22025 1.00304 0.98656 0.95974 1.20641 0.83110 0.96210 0.94956 1.44295 1.03203 1.65965 1.19075 1.19480 0.95078 1.37005 0.86798 0.91144 1.25740 0.99015 1.00937 0.98644 1.70160 1.24792 1.46129 1.16803 0.85309 0.78496 0.78068 0.79208 1.19425 1.21949 1.21755 0.94522 0.93095 0.90477 0.74528 0.82834 0.83556 0.83442 0.81381 0.69815 0.93063 0.91209 0.94036 0.90926 0.92607 0.97571 0.94189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.68 7.84 71.98 0.56 -4.11 16 2 C 0.17 6.51 3.03 44.97 0.14 6.64 16 3 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 4 C 0.15 5.28 1.99 45.07 0.09 5.37 16 5 H 0.05 2.27 7.58 -2.39 -0.02 2.25 16 6 N -0.70 -18.63 4.57 -442.16 -2.02 -20.65 16 7 C 0.50 14.02 7.86 87.65 0.69 14.71 16 8 O -0.58 -21.93 16.09 -3.03 -0.05 -21.98 16 9 C 0.10 1.90 6.18 85.63 0.53 2.43 16 10 N -0.57 -11.51 2.09 -777.22 -1.63 -13.13 16 11 C 0.52 9.12 8.31 87.94 0.73 9.85 16 12 O -0.50 -11.86 17.75 -2.89 -0.05 -11.91 16 13 C 0.08 0.50 7.97 85.76 0.68 1.19 16 14 N -0.71 -7.69 6.58 -480.31 -3.16 -10.85 16 15 C 0.70 14.94 8.62 179.44 1.55 16.49 16 16 O -0.58 -17.44 17.48 -3.84 -0.07 -17.50 16 17 C -0.11 -3.81 5.46 30.62 0.17 -3.64 16 18 C -0.13 -5.20 6.08 30.67 0.19 -5.02 16 19 C 0.18 8.56 5.29 86.36 0.46 9.01 16 20 N -0.60 -29.79 2.99 -675.21 -2.02 -31.81 16 21 C -0.25 -13.76 8.61 84.03 0.72 -13.04 16 22 H 0.07 3.76 6.20 -2.91 -0.02 3.74 16 23 C -0.05 -2.67 4.96 84.86 0.42 -2.25 16 24 N -0.93 -54.72 11.14 21.65 0.24 -54.48 16 25 Si 0.96 45.32 29.58 68.60 2.03 47.35 16 26 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 27 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 28 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 29 H 0.04 1.45 7.41 -2.38 -0.02 1.44 16 30 H 0.05 1.98 7.66 -2.39 -0.02 1.96 16 31 H 0.08 2.19 7.78 -2.39 -0.02 2.17 16 32 H 0.42 7.91 8.60 -92.71 -0.80 7.12 16 33 H 0.15 1.98 8.00 -2.39 -0.02 1.96 16 34 H 0.15 2.19 7.86 -2.39 -0.02 2.17 16 35 H 0.15 0.49 8.14 -2.38 -0.02 0.47 16 36 H 0.17 -0.24 8.14 -2.39 -0.02 -0.26 16 37 H 0.45 2.52 8.96 -92.71 -0.83 1.69 16 38 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 39 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 40 H 0.04 1.76 8.14 -2.39 -0.02 1.75 16 41 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 42 H 0.06 3.08 6.06 -2.39 -0.01 3.07 16 43 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 44 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 Total: -1.00 -83.26 361.38 -0.38 -83.63 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: -0.58 Total: 13.71 kcal Atomic # 6 Polarization: 30.70 SS G_CDS: 6.93 Total: 37.63 kcal Atomic # 7 Polarization: -122.34 SS G_CDS: -8.59 Total: -130.93 kcal Atomic # 8 Polarization: -51.23 SS G_CDS: -0.17 Total: -51.40 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Total: -83.26 -0.38 -83.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994361961.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.639 kcal (2) G-P(sol) polarization free energy of solvation -83.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds