Wall clock time and date at job start Fri Apr 10 2020 18:33:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 110.65213 * 2 1 4 4 C 1.51579 * 110.59780 * 122.91075 * 2 1 3 5 5 O 1.21233 * 127.16311 * 298.56737 * 4 2 1 6 6 N 1.34773 * 105.68013 * 118.30312 * 4 2 1 7 7 C 1.33795 * 111.64536 * 0.22635 * 6 4 2 8 8 O 1.21538 * 123.77059 * 179.97438 * 7 6 4 9 9 N 1.34523 * 112.45569 * 359.97438 * 7 6 4 10 10 C 1.46505 * 126.68604 * 179.97438 * 9 7 6 11 11 C 1.50702 * 109.46614 * 90.02814 * 10 9 7 12 12 O 1.21276 * 120.00464 * 359.97438 * 11 10 9 13 13 N 1.34778 * 119.99611 * 179.97438 * 11 10 9 14 14 C 1.46493 * 120.00151 * 180.02562 * 13 11 10 15 15 H 1.09004 * 110.63902 * 325.70133 * 14 13 11 16 16 C 1.55161 * 110.72159 * 202.56124 * 14 13 11 17 17 C 1.55385 * 101.36556 * 277.03851 * 16 14 13 18 18 N 1.47425 * 104.87711 * 323.01968 * 17 16 14 19 19 C 1.36932 * 125.64927 * 204.09740 * 18 17 16 20 20 H 1.08002 * 120.00030 * 180.02562 * 19 18 17 21 21 C 1.38810 * 120.00338 * 0.03555 * 19 18 17 22 22 N 1.31624 * 119.99700 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00346 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.46750 * 90.00225 * 23 21 19 25 25 H 1.48498 * 109.47235 * 210.00149 * 23 21 19 26 26 H 1.48498 * 109.47024 * 330.00461 * 23 21 19 27 27 C 1.47026 * 108.70067 * 24.12957 * 18 17 16 28 28 H 1.09004 * 109.47577 * 298.54166 * 1 2 3 29 29 H 1.09002 * 109.47579 * 58.54154 * 1 2 3 30 30 H 1.09007 * 109.47152 * 178.53763 * 1 2 3 31 31 H 1.09001 * 109.46723 * 181.45611 * 3 2 1 32 32 H 1.09000 * 109.47240 * 301.45637 * 3 2 1 33 33 H 1.09000 * 109.46883 * 61.46213 * 3 2 1 34 34 H 0.97002 * 124.17615 * 180.18986 * 6 4 2 35 35 H 1.09004 * 109.46854 * 210.02793 * 10 9 7 36 36 H 1.09001 * 109.47150 * 330.02961 * 10 9 7 37 37 H 0.97009 * 119.99840 * 359.97438 * 13 11 10 38 38 H 1.09002 * 111.00550 * 35.21056 * 16 14 13 39 39 H 1.09002 * 111.00221 * 159.06161 * 16 14 13 40 40 H 1.08998 * 110.34936 * 204.16490 * 17 16 14 41 41 H 1.09009 * 110.34787 * 81.86831 * 17 16 14 42 42 H 0.96997 * 119.99944 * 179.97438 * 22 21 19 43 43 H 1.09008 * 109.87897 * 239.52506 * 27 18 17 44 44 H 1.08998 * 109.88158 * 118.36001 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0696 1.4317 0.0000 4 6 2.0632 -0.7709 1.1912 5 8 1.8884 -0.5194 2.3642 6 7 2.7673 -1.7977 0.6750 7 6 2.7571 -1.7799 -0.6628 8 8 3.3232 -2.6041 -1.3537 9 7 2.0502 -0.7478 -1.1576 10 6 1.8362 -0.4317 -2.5720 11 6 0.5907 -1.1264 -3.0590 12 8 -0.0543 -1.8178 -2.2997 13 7 0.1937 -0.9792 -4.3386 14 6 -1.0174 -1.6540 -4.8120 15 1 -1.1368 -2.6191 -4.3195 16 6 -0.9835 -1.8249 -6.3538 17 6 -1.4927 -0.4352 -6.8271 18 7 -2.5233 -0.0547 -5.8439 19 6 -3.5542 0.8187 -6.0659 20 1 -4.2601 1.0327 -5.2770 21 6 -3.6923 1.4290 -7.3050 22 7 -2.8325 1.1678 -8.2667 23 14 -5.0983 2.6211 -7.6076 24 1 -4.6650 3.9971 -7.2554 25 1 -5.4861 2.5757 -9.0403 26 1 -6.2614 2.2382 -6.7675 27 6 -2.2602 -0.7678 -4.5854 28 1 -0.3634 0.4910 0.9028 29 1 -0.3634 0.5363 -0.8766 30 1 -0.3634 -1.0274 -0.0262 31 1 3.1591 1.4093 -0.0261 32 1 1.6959 1.9608 -0.8766 33 1 1.7383 1.9448 0.9028 34 1 3.2253 -2.4666 1.2076 35 1 1.7211 0.6458 -2.6901 36 1 2.6930 -0.7715 -3.1540 37 1 0.7094 -0.4258 -4.9459 38 1 0.0315 -2.0128 -6.7039 39 1 -1.6588 -2.6185 -6.6738 40 1 -1.9283 -0.5104 -7.8234 41 1 -0.6779 0.2889 -6.8220 42 1 -2.9292 1.5939 -9.1327 43 1 -3.1169 -1.3900 -4.3259 44 1 -2.0643 -0.0516 -3.7875 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001015944197.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:09 Heat of formation + Delta-G solvation = -42.435823 kcal Electronic energy + Delta-G solvation = -28527.654758 eV Core-core repulsion = 24482.161098 eV Total energy + Delta-G solvation = -4045.493660 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.75825 -39.72946 -38.86360 -37.40777 -36.73815 -35.06177 -33.90323 -32.61459 -31.79956 -29.40188 -28.44329 -27.81329 -26.97393 -24.66600 -24.48957 -22.37221 -21.10927 -20.48998 -20.24688 -19.87158 -18.38474 -17.57304 -16.97901 -16.74313 -16.48615 -16.17244 -16.01722 -15.31941 -15.00129 -14.70783 -14.60532 -14.45463 -13.90458 -13.80079 -13.46959 -13.25589 -12.96908 -12.82840 -12.61482 -12.50974 -12.16948 -11.96507 -11.80495 -11.67588 -11.12474 -11.05950 -10.93119 -10.83041 -10.62964 -10.48397 -10.41696 -10.16748 -10.10360 -9.94259 -9.63722 -9.13283 -8.81866 -8.67266 -6.90175 -5.71997 -3.13228 1.32596 1.86327 2.63607 2.69722 2.75791 3.35669 3.40729 3.41942 3.43322 3.65962 4.21018 4.43023 4.44474 4.61009 4.78104 4.96691 5.11529 5.16001 5.28539 5.29101 5.39490 5.44529 5.47066 5.54714 5.61002 5.69780 5.73147 5.81177 6.00650 6.02265 6.21220 6.29137 6.44269 6.48276 6.64592 6.75124 6.96695 7.07197 7.36350 7.56212 7.66719 7.77473 7.85924 8.28252 8.34646 9.16056 9.76677 10.40746 11.32097 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.020740 B = 0.002994 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.734738 B = 9349.421810 C =10104.269450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.120 3.880 3 C -0.147 4.147 4 C 0.538 3.462 5 O -0.468 6.468 6 N -0.679 5.679 7 C 0.709 3.291 8 O -0.541 6.541 9 N -0.597 5.597 10 C 0.131 3.869 11 C 0.492 3.508 12 O -0.532 6.532 13 N -0.707 5.707 14 C 0.132 3.868 15 H 0.088 0.912 16 C -0.154 4.154 17 C 0.152 3.848 18 N -0.603 5.603 19 C -0.221 4.221 20 H 0.077 0.923 21 C -0.011 4.011 22 N -0.923 5.923 23 Si 0.914 3.086 24 H -0.289 1.289 25 H -0.290 1.290 26 H -0.281 1.281 27 C 0.130 3.870 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.067 0.933 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.431 0.569 35 H 0.118 0.882 36 H 0.120 0.880 37 H 0.401 0.599 38 H 0.065 0.935 39 H 0.075 0.925 40 H 0.108 0.892 41 H 0.011 0.989 42 H 0.252 0.748 43 H 0.030 0.970 44 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.013 -1.440 13.375 18.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.031 3.969 3 C -0.205 4.205 4 C 0.323 3.677 5 O -0.337 6.337 6 N -0.349 5.349 7 C 0.410 3.590 8 O -0.414 6.414 9 N -0.335 5.335 10 C 0.006 3.994 11 C 0.276 3.724 12 O -0.409 6.409 13 N -0.358 5.358 14 C 0.027 3.973 15 H 0.106 0.894 16 C -0.193 4.193 17 C 0.027 3.973 18 N -0.330 5.330 19 C -0.350 4.350 20 H 0.095 0.905 21 C -0.206 4.206 22 N -0.572 5.572 23 Si 0.745 3.255 24 H -0.217 1.217 25 H -0.216 1.216 26 H -0.207 1.207 27 C 0.003 3.997 28 H 0.096 0.904 29 H 0.097 0.903 30 H 0.099 0.901 31 H 0.086 0.914 32 H 0.100 0.900 33 H 0.104 0.896 34 H 0.273 0.727 35 H 0.136 0.864 36 H 0.138 0.862 37 H 0.236 0.764 38 H 0.084 0.916 39 H 0.094 0.906 40 H 0.126 0.874 41 H 0.029 0.971 42 H 0.063 0.937 43 H 0.048 0.952 44 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 12.580 -2.013 13.835 18.808 hybrid contribution -0.282 0.562 -0.248 0.676 sum 12.299 -1.451 13.587 18.384 Atomic orbital electron populations 1.21999 0.89258 1.05033 1.03773 1.21578 0.98058 0.94024 0.83196 1.22008 1.01771 0.91946 1.04756 1.20753 0.76671 0.80483 0.89791 1.90821 1.56768 1.69492 1.16595 1.44322 1.51652 1.30286 1.08630 1.15738 0.79762 0.81988 0.81508 1.91023 1.49047 1.40725 1.60622 1.47168 1.52787 1.28125 1.05416 1.21164 0.98040 1.01760 0.78482 1.20932 0.86692 0.82179 0.82616 1.90689 1.56055 1.39390 1.54735 1.45942 1.27997 1.50886 1.10973 1.21999 0.83948 0.95526 0.95796 0.89438 1.23429 1.00857 1.02115 0.92924 1.22034 0.90322 0.87968 0.96972 1.44511 1.30250 1.50544 1.07681 1.19078 1.02670 1.16226 0.97002 0.90541 1.24770 0.99095 1.00614 0.96145 1.69775 1.37150 1.46574 1.03705 0.86072 0.81502 0.80735 0.77193 1.21657 1.21642 1.20694 1.21664 0.93936 0.93774 0.90366 0.90361 0.90346 0.90147 0.91386 0.89988 0.89596 0.72707 0.86381 0.86213 0.76424 0.91615 0.90631 0.87429 0.97095 0.93721 0.95213 0.95751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 7.66 37.16 0.28 -1.18 16 2 C 0.12 1.12 1.14 -132.10 -0.15 0.97 16 3 C -0.15 -0.97 8.74 37.16 0.32 -0.64 16 4 C 0.54 5.55 7.48 -10.55 -0.08 5.47 16 5 O -0.47 -5.73 18.02 5.60 0.10 -5.63 16 6 N -0.68 -6.69 5.70 -15.79 -0.09 -6.78 16 7 C 0.71 8.63 8.68 -88.02 -0.76 7.87 16 8 O -0.54 -8.31 17.71 5.33 0.09 -8.21 16 9 N -0.60 -6.26 2.00 -166.45 -0.33 -6.59 16 10 C 0.13 1.24 6.34 -5.19 -0.03 1.21 16 11 C 0.49 6.63 7.70 -10.98 -0.08 6.54 16 12 O -0.53 -8.97 14.21 5.56 0.08 -8.89 16 13 N -0.71 -9.76 5.10 -52.03 -0.27 -10.02 16 14 C 0.13 2.22 3.28 -66.10 -0.22 2.00 16 15 H 0.09 1.50 7.62 -51.93 -0.40 1.10 16 16 C -0.15 -2.64 6.69 -24.32 -0.16 -2.80 16 17 C 0.15 3.37 5.87 -2.27 -0.01 3.35 16 18 N -0.60 -14.64 3.40 -169.77 -0.58 -15.22 16 19 C -0.22 -5.97 10.27 -15.06 -0.15 -6.12 16 20 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 21 C -0.01 -0.30 5.49 -17.43 -0.10 -0.39 16 22 N -0.92 -25.72 10.09 55.49 0.56 -25.16 16 23 Si 0.91 21.44 29.55 -169.99 -5.02 16.41 16 24 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 25 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 26 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 27 C 0.13 2.65 6.99 -3.06 -0.02 2.63 16 28 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.08 1.02 7.25 -51.93 -0.38 0.65 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.08 0.46 7.59 -51.93 -0.39 0.06 16 33 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.43 3.28 8.96 -40.82 -0.37 2.91 16 35 H 0.12 0.76 7.47 -51.93 -0.39 0.37 16 36 H 0.12 0.98 8.03 -51.93 -0.42 0.57 16 37 H 0.40 4.78 8.63 -40.82 -0.35 4.43 16 38 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 40 H 0.11 2.76 5.87 -51.93 -0.30 2.45 16 41 H 0.01 0.25 8.14 -51.92 -0.42 -0.17 16 42 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 43 H 0.03 0.63 8.14 -51.92 -0.42 0.21 16 44 H 0.02 0.51 8.04 -51.93 -0.42 0.10 16 LS Contribution 364.18 15.07 5.49 5.49 Total: -1.00 -34.17 364.18 -7.47 -41.64 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -6.34 Total: 4.06 kcal Atomic # 6 Polarization: 20.07 SS G_CDS: -1.17 Total: 18.91 kcal Atomic # 7 Polarization: -63.07 SS G_CDS: -0.70 Total: -63.78 kcal Atomic # 8 Polarization: -23.01 SS G_CDS: 0.27 Total: -22.73 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.17 -7.47 -41.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015944197.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.796 kcal (2) G-P(sol) polarization free energy of solvation -34.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds