Wall clock time and date at job start Fri Apr 10 2020 18:33:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 110.65213 * 2 1 4 4 C 1.51579 * 110.59780 * 122.91075 * 2 1 3 5 5 O 1.21233 * 127.16311 * 298.56737 * 4 2 1 6 6 N 1.34773 * 105.68013 * 118.30312 * 4 2 1 7 7 C 1.33795 * 111.64536 * 0.22635 * 6 4 2 8 8 O 1.21538 * 123.77059 * 179.97438 * 7 6 4 9 9 N 1.34523 * 112.45569 * 359.97438 * 7 6 4 10 10 C 1.46505 * 126.68604 * 179.97438 * 9 7 6 11 11 C 1.50702 * 109.46614 * 90.02814 * 10 9 7 12 12 O 1.21276 * 120.00464 * 359.97438 * 11 10 9 13 13 N 1.34778 * 119.99611 * 179.97438 * 11 10 9 14 14 C 1.46493 * 120.00151 * 180.02562 * 13 11 10 15 15 H 1.09004 * 110.63902 * 325.70133 * 14 13 11 16 16 C 1.55161 * 110.72159 * 202.56124 * 14 13 11 17 17 C 1.55385 * 101.36556 * 277.03851 * 16 14 13 18 18 N 1.47425 * 104.87711 * 323.01968 * 17 16 14 19 19 C 1.36932 * 125.64927 * 204.09740 * 18 17 16 20 20 H 1.08002 * 120.00030 * 180.02562 * 19 18 17 21 21 C 1.38810 * 120.00338 * 0.03555 * 19 18 17 22 22 N 1.31624 * 119.99700 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00346 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.46750 * 90.00225 * 23 21 19 25 25 H 1.48498 * 109.47235 * 210.00149 * 23 21 19 26 26 H 1.48498 * 109.47024 * 330.00461 * 23 21 19 27 27 C 1.47026 * 108.70067 * 24.12957 * 18 17 16 28 28 H 1.09004 * 109.47577 * 298.54166 * 1 2 3 29 29 H 1.09002 * 109.47579 * 58.54154 * 1 2 3 30 30 H 1.09007 * 109.47152 * 178.53763 * 1 2 3 31 31 H 1.09001 * 109.46723 * 181.45611 * 3 2 1 32 32 H 1.09000 * 109.47240 * 301.45637 * 3 2 1 33 33 H 1.09000 * 109.46883 * 61.46213 * 3 2 1 34 34 H 0.97002 * 124.17615 * 180.18986 * 6 4 2 35 35 H 1.09004 * 109.46854 * 210.02793 * 10 9 7 36 36 H 1.09001 * 109.47150 * 330.02961 * 10 9 7 37 37 H 0.97009 * 119.99840 * 359.97438 * 13 11 10 38 38 H 1.09002 * 111.00550 * 35.21056 * 16 14 13 39 39 H 1.09002 * 111.00221 * 159.06161 * 16 14 13 40 40 H 1.08998 * 110.34936 * 204.16490 * 17 16 14 41 41 H 1.09009 * 110.34787 * 81.86831 * 17 16 14 42 42 H 0.96997 * 119.99944 * 179.97438 * 22 21 19 43 43 H 1.09008 * 109.87897 * 239.52506 * 27 18 17 44 44 H 1.08998 * 109.88158 * 118.36001 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0696 1.4317 0.0000 4 6 2.0632 -0.7709 1.1912 5 8 1.8884 -0.5194 2.3642 6 7 2.7673 -1.7977 0.6750 7 6 2.7571 -1.7799 -0.6628 8 8 3.3232 -2.6041 -1.3537 9 7 2.0502 -0.7478 -1.1576 10 6 1.8362 -0.4317 -2.5720 11 6 0.5907 -1.1264 -3.0590 12 8 -0.0543 -1.8178 -2.2997 13 7 0.1937 -0.9792 -4.3386 14 6 -1.0174 -1.6540 -4.8120 15 1 -1.1368 -2.6191 -4.3195 16 6 -0.9835 -1.8249 -6.3538 17 6 -1.4927 -0.4352 -6.8271 18 7 -2.5233 -0.0547 -5.8439 19 6 -3.5542 0.8187 -6.0659 20 1 -4.2601 1.0327 -5.2770 21 6 -3.6923 1.4290 -7.3050 22 7 -2.8325 1.1678 -8.2667 23 14 -5.0983 2.6211 -7.6076 24 1 -4.6650 3.9971 -7.2554 25 1 -5.4861 2.5757 -9.0403 26 1 -6.2614 2.2382 -6.7675 27 6 -2.2602 -0.7678 -4.5854 28 1 -0.3634 0.4910 0.9028 29 1 -0.3634 0.5363 -0.8766 30 1 -0.3634 -1.0274 -0.0262 31 1 3.1591 1.4093 -0.0261 32 1 1.6959 1.9608 -0.8766 33 1 1.7383 1.9448 0.9028 34 1 3.2253 -2.4666 1.2076 35 1 1.7211 0.6458 -2.6901 36 1 2.6930 -0.7715 -3.1540 37 1 0.7094 -0.4258 -4.9459 38 1 0.0315 -2.0128 -6.7039 39 1 -1.6588 -2.6185 -6.6738 40 1 -1.9283 -0.5104 -7.8234 41 1 -0.6779 0.2889 -6.8220 42 1 -2.9292 1.5939 -9.1327 43 1 -3.1169 -1.3900 -4.3259 44 1 -2.0643 -0.0516 -3.7875 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001015944197.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:08 Heat of formation + Delta-G solvation = -68.164190 kcal Electronic energy + Delta-G solvation = -28528.770424 eV Core-core repulsion = 24482.161098 eV Total energy + Delta-G solvation = -4046.609326 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -43.61176 -40.90184 -39.82801 -38.85397 -37.72261 -35.94390 -35.43183 -33.74954 -33.18105 -31.04739 -29.62413 -28.47897 -28.40394 -26.39394 -25.44725 -23.39910 -22.06281 -21.92734 -21.54529 -21.19414 -19.25132 -18.95350 -18.42424 -17.70553 -17.47810 -17.23248 -17.00705 -16.71708 -16.30484 -16.01130 -15.67179 -15.44065 -15.40787 -14.97717 -14.67405 -14.38761 -14.13133 -13.84369 -13.66224 -13.53368 -13.37598 -13.17315 -13.01394 -12.79910 -12.77259 -12.59202 -12.29618 -12.09140 -12.00202 -11.98840 -11.80396 -11.54030 -11.41631 -11.30354 -11.18279 -10.72321 -10.09218 -10.02269 -8.85897 -7.75621 -5.18797 0.46135 1.04277 1.49357 1.50205 1.58864 1.64156 1.81776 1.87148 2.35672 2.51604 2.85500 3.34810 3.49340 3.64317 3.74535 3.81633 3.87386 3.92986 4.10912 4.31164 4.33640 4.46783 4.57388 4.62505 4.68900 4.72737 4.76484 4.82326 4.95216 4.98117 5.01736 5.08082 5.10768 5.17742 5.23742 5.47679 5.61668 5.67119 5.84574 5.88587 6.24065 6.34929 6.60540 6.96596 7.14414 7.28079 7.80650 8.43392 9.25550 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.020740 B = 0.002994 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.734738 B = 9349.421810 C =10104.269450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.121 3.879 3 C -0.142 4.142 4 C 0.540 3.460 5 O -0.487 6.487 6 N -0.672 5.672 7 C 0.706 3.294 8 O -0.576 6.576 9 N -0.593 5.593 10 C 0.133 3.867 11 C 0.490 3.510 12 O -0.569 6.569 13 N -0.701 5.701 14 C 0.148 3.852 15 H 0.089 0.911 16 C -0.135 4.135 17 C 0.155 3.845 18 N -0.622 5.622 19 C -0.239 4.239 20 H 0.073 0.927 21 C -0.060 4.060 22 N -0.943 5.943 23 Si 0.975 3.025 24 H -0.285 1.285 25 H -0.293 1.293 26 H -0.275 1.275 27 C 0.130 3.870 28 H 0.090 0.910 29 H 0.076 0.924 30 H 0.051 0.949 31 H 0.077 0.923 32 H 0.098 0.902 33 H 0.092 0.908 34 H 0.439 0.561 35 H 0.157 0.843 36 H 0.140 0.860 37 H 0.413 0.587 38 H 0.098 0.902 39 H 0.075 0.925 40 H 0.072 0.928 41 H 0.004 0.996 42 H 0.248 0.752 43 H 0.019 0.981 44 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.085 -0.488 13.846 19.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.033 3.967 3 C -0.200 4.200 4 C 0.327 3.673 5 O -0.358 6.358 6 N -0.341 5.341 7 C 0.407 3.593 8 O -0.452 6.452 9 N -0.330 5.330 10 C 0.008 3.992 11 C 0.276 3.724 12 O -0.447 6.447 13 N -0.354 5.354 14 C 0.042 3.958 15 H 0.107 0.893 16 C -0.174 4.174 17 C 0.030 3.970 18 N -0.348 5.348 19 C -0.368 4.368 20 H 0.091 0.909 21 C -0.253 4.253 22 N -0.593 5.593 23 Si 0.804 3.196 24 H -0.212 1.212 25 H -0.220 1.220 26 H -0.200 1.200 27 C 0.003 3.997 28 H 0.109 0.891 29 H 0.095 0.905 30 H 0.070 0.930 31 H 0.096 0.904 32 H 0.116 0.884 33 H 0.111 0.889 34 H 0.283 0.717 35 H 0.175 0.825 36 H 0.157 0.843 37 H 0.250 0.750 38 H 0.117 0.883 39 H 0.093 0.907 40 H 0.090 0.910 41 H 0.022 0.978 42 H 0.057 0.943 43 H 0.037 0.963 44 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 13.674 -1.049 14.330 19.836 hybrid contribution -0.653 0.239 -0.345 0.776 sum 13.021 -0.810 13.986 19.126 Atomic orbital electron populations 1.21916 0.89950 1.03246 1.04331 1.21712 0.97377 0.95434 0.82193 1.22046 1.02345 0.89693 1.05925 1.20898 0.76271 0.80364 0.89770 1.90817 1.57543 1.69967 1.17451 1.44242 1.51382 1.30411 1.08100 1.15899 0.79639 0.81869 0.81845 1.90997 1.50684 1.42048 1.61459 1.47300 1.51954 1.27625 1.06135 1.21399 0.96353 1.03467 0.77949 1.21669 0.87404 0.81490 0.81858 1.90689 1.57503 1.40987 1.55544 1.45830 1.27018 1.50910 1.11612 1.21642 0.83752 0.94897 0.95515 0.89309 1.23257 1.02453 0.98856 0.92823 1.21841 0.89435 0.90560 0.95126 1.44754 1.30143 1.50433 1.09493 1.19363 1.03510 1.16827 0.97127 0.90879 1.25505 1.01388 1.02344 0.96033 1.70010 1.38366 1.47232 1.03685 0.85126 0.79044 0.78782 0.76643 1.21224 1.21973 1.20030 1.21738 0.95455 0.93682 0.88777 0.89115 0.90488 0.93013 0.90432 0.88358 0.88908 0.71729 0.82539 0.84270 0.75022 0.88324 0.90660 0.90990 0.97781 0.94259 0.96287 0.96274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.63 7.66 71.98 0.55 -2.07 16 2 C 0.12 2.01 1.14 2.98 0.00 2.02 16 3 C -0.14 -1.42 8.74 71.98 0.63 -0.79 16 4 C 0.54 10.45 7.48 87.94 0.66 11.11 16 5 O -0.49 -11.40 18.02 -2.88 -0.05 -11.45 16 6 N -0.67 -12.54 5.70 -441.12 -2.52 -15.06 16 7 C 0.71 16.27 8.68 179.44 1.56 17.83 16 8 O -0.58 -17.13 17.71 -3.84 -0.07 -17.19 16 9 N -0.59 -11.18 2.00 -798.94 -1.60 -12.77 16 10 C 0.13 2.11 6.34 85.63 0.54 2.66 16 11 C 0.49 12.23 7.70 87.66 0.68 12.91 16 12 O -0.57 -18.65 14.21 -3.02 -0.04 -18.70 16 13 N -0.70 -17.87 5.10 -436.93 -2.23 -20.10 16 14 C 0.15 4.77 3.28 46.18 0.15 4.92 16 15 H 0.09 2.92 7.62 -2.38 -0.02 2.90 16 16 C -0.14 -4.42 6.69 32.15 0.22 -4.20 16 17 C 0.16 6.85 5.87 87.02 0.51 7.36 16 18 N -0.62 -30.30 3.40 -691.02 -2.35 -32.64 16 19 C -0.24 -12.99 10.27 84.03 0.86 -12.12 16 20 H 0.07 3.90 7.83 -2.91 -0.02 3.87 16 21 C -0.06 -3.25 5.49 84.86 0.47 -2.78 16 22 N -0.94 -53.14 10.09 21.65 0.22 -52.93 16 23 Si 0.98 44.14 29.55 68.60 2.03 46.17 16 24 H -0.29 -12.65 7.11 99.48 0.71 -11.95 16 25 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 26 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 27 C 0.13 5.28 6.99 86.73 0.61 5.89 16 28 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.05 1.31 7.25 -2.38 -0.02 1.29 16 31 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.10 0.69 7.59 -2.39 -0.02 0.68 16 33 H 0.09 0.85 8.14 -2.39 -0.02 0.84 16 34 H 0.44 6.38 8.96 -92.71 -0.83 5.54 16 35 H 0.16 1.33 7.47 -2.39 -0.02 1.31 16 36 H 0.14 1.79 8.03 -2.39 -0.02 1.77 16 37 H 0.41 8.69 8.63 -92.70 -0.80 7.89 16 38 H 0.10 2.60 8.14 -2.39 -0.02 2.58 16 39 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 40 H 0.07 3.74 5.87 -2.39 -0.01 3.73 16 41 H 0.00 0.19 8.14 -2.38 -0.02 0.17 16 42 H 0.25 13.60 8.31 -92.71 -0.77 12.83 16 43 H 0.02 0.81 8.14 -2.38 -0.02 0.79 16 44 H 0.02 0.80 8.04 -2.39 -0.02 0.78 16 Total: -1.00 -75.05 364.18 0.24 -74.80 By element: Atomic # 1 Polarization: 17.73 SS G_CDS: -0.58 Total: 17.15 kcal Atomic # 6 Polarization: 35.29 SS G_CDS: 7.43 Total: 42.72 kcal Atomic # 7 Polarization: -125.03 SS G_CDS: -8.47 Total: -133.50 kcal Atomic # 8 Polarization: -47.18 SS G_CDS: -0.16 Total: -47.34 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -75.05 0.24 -74.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015944197.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.639 kcal (2) G-P(sol) polarization free energy of solvation -75.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds